mRNA_M-pyrifera_M_contig118519.3827.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118519.3827.1
Unique NamemRNA_M-pyrifera_M_contig118519.3827.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig118519.3827.1 vs. uniprot
Match: A0A8J4UG06_CLAMG (Rhomboid-related protein 4 isoform X1 (Fragment) n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4UG06_CLAMG)

HSP 1 Score: 64.3 bits (155), Expect = 4.350e-10
Identity = 39/83 (46.99%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:   43 QILGDATAMFTALSGFSGVLFGYKVLLTQGAPPEHMSALMGILPLQTRYLVWGELVLIHVMFPSSSFTAHLCGIVAALTISMG 291
            QI GD +       GFSGVLFG KVL      P  +  +MGI P+  RY  W ELVLIH+M P +SF  HL GI+  L  + G
Sbjct:  128 QITGDYSFSMQCAVGFSGVLFGLKVL-NNYYNPGTVKYIMGI-PVANRYACWIELVLIHIMNPGTSFVGHLSGILVGLLYTTG 208
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BLAST of mRNA_M-pyrifera_M_contig118519.3827.1 vs. uniprot
Match: UPI001CC54DDE (rhomboid-related protein 4 n=1 Tax=Dromiciops gliroides TaxID=33562 RepID=UPI001CC54DDE)

HSP 1 Score: 63.5 bits (153), Expect = 9.220e-10
Identity = 35/97 (36.08%), Postives = 51/97 (52.58%), Query Frame = 1 
Query:    1 LSQFLYISCAYFRQQILGDATAMFTALSGFSGVLFGYKVLLTQGAPPEHMSALMGILPLQTRYLVWGELVLIHVMFPSSSFTAHLCGIVAALTISMG 291
            L+  +Y+   Y   ++LG          GFSGVLFG KVL     P  H + +   +P   +Y  W ELV+IH++ P +SF  HL GI+  L  ++G
Sbjct:  114 LTGVVYMVLEYTVAELLGQPAYKIYCAIGFSGVLFGLKVLSNNYNPGGHTNVMGMYIP--NKYACWVELVMIHLLSPQTSFAGHLAGIIVGLMYTLG 208
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BLAST of mRNA_M-pyrifera_M_contig118519.3827.1 vs. uniprot
Match: A0A673BX71_9TELE (Rhomboid domain containing 1 n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A673BX71_9TELE)

HSP 1 Score: 62.8 bits (151), Expect = 9.560e-10
Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   43 QILGDATAMFTALSGFSGVLFGYKVLLTQGAPPEHMSALMGILPLQTRYLVWGELVLIHVMFPSSSFTAHLCGIVAALTISMG 291
            +++ D +   T   GFSGVLFG KVL +    P  ++ +MGI P+  RY  W ELVLIHV  P +SF  HL GI+  L  + G
Sbjct:   44 ELMQDQSYSMTCAVGFSGVLFGLKVL-SNHYYPGGVTYMMGI-PVSNRYASWVELVLIHVTSPGTSFIGHLAGILVGLLYTSG 124
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BLAST of mRNA_M-pyrifera_M_contig118519.3827.1 vs. uniprot
Match: A0A1B6DBH9_9HEMI (Rhomboid domain-containing protein (Fragment) n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6DBH9_9HEMI)

HSP 1 Score: 63.2 bits (152), Expect = 1.340e-9
Identity = 35/88 (39.77%), Postives = 52/88 (59.09%), Query Frame = 1 
Query:   13 LYISCAYFRQQILGDATAMFTALSGFSGVLFGYKVLLTQGAPPEHMSALMGILPLQTRYLVWGELVLIHVMFPSSSFTAHLCGIVAAL 276
            LY+  A      + D++ M T   GFSGV+F  KV+ T+  PP   S  +  L + ++Y VW EL+LIH++ P+SSF  H  G++A L
Sbjct:  175 LYVGIAALGANYI-DSSMMKTCAIGFSGVIFALKVITTREEPPG--STFVSGLSVSSKYAVWLELILIHLLVPNSSFMGHFAGLLAGL 259
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BLAST of mRNA_M-pyrifera_M_contig118519.3827.1 vs. uniprot
Match: A0A673BUC4_9TELE (Rhomboid domain containing 1 n=6 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A673BUC4_9TELE)

HSP 1 Score: 62.8 bits (151), Expect = 1.740e-9
Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   43 QILGDATAMFTALSGFSGVLFGYKVLLTQGAPPEHMSALMGILPLQTRYLVWGELVLIHVMFPSSSFTAHLCGIVAALTISMG 291
            +++ D +   T   GFSGVLFG KVL +    P  ++ +MGI P+  RY  W ELVLIHV  P +SF  HL GI+  L  + G
Sbjct:  128 ELMQDQSYSMTCAVGFSGVLFGLKVL-SNHYYPGGVTYMMGI-PVSNRYASWVELVLIHVTSPGTSFIGHLAGILVGLLYTSG 208
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BLAST of mRNA_M-pyrifera_M_contig118519.3827.1 vs. uniprot
Match: A0A673C0K7_9TELE (Rhomboid domain containing 1 n=2 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A673C0K7_9TELE)

HSP 1 Score: 62.8 bits (151), Expect = 1.750e-9
Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:   43 QILGDATAMFTALSGFSGVLFGYKVLLTQGAPPEHMSALMGILPLQTRYLVWGELVLIHVMFPSSSFTAHLCGIVAALTISMG 291
            +++ D +   T   GFSGVLFG KVL +    P  ++ +MGI P+  RY  W ELVLIHV  P +SF  HL GI+  L  + G
Sbjct:  128 ELMQDQSYSMTCAVGFSGVLFGLKVL-SNHYYPGGVTYMMGI-PVSNRYASWVELVLIHVTSPGTSFIGHLAGILVGLLYTSG 208
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BLAST of mRNA_M-pyrifera_M_contig118519.3827.1 vs. uniprot
Match: A0A2P6TCP9_CHLSO (Rhomboid mitochondrial n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TCP9_CHLSO)

HSP 1 Score: 62.4 bits (150), Expect = 2.520e-9
Identity = 39/94 (41.49%), Postives = 53/94 (56.38%), Query Frame = 1 
Query:    4 SQFLYISCAYFRQQILGDATAMFTALS---GFSGVLFGYKVLLTQGAPPEHMSALMGILPLQTRYLVWGELVLIHVMFPSSSFTAHLCGIVAAL 276
            SQ LYI  A   +Q L  A       S   GFSGVLFG KV+L   +     S + G+  + T++  WGELV+  ++ P++SF  HLCGI+A L
Sbjct:  152 SQLLYIGLAVLLRQQLAPAAGWALLRSCAVGFSGVLFGLKVVLNHNS--AGWSEIYGV-TIPTKFAAWGELVVAQLLIPNASFFGHLCGILAGL 242
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BLAST of mRNA_M-pyrifera_M_contig118519.3827.1 vs. uniprot
Match: A0A6P3W9Z0_CLUHA (rhomboid-related protein 4 n=1 Tax=Clupea harengus TaxID=7950 RepID=A0A6P3W9Z0_CLUHA)

HSP 1 Score: 62.0 bits (149), Expect = 3.680e-9
Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 1 
Query:   85 GFSGVLFGYKVLLTQGAPPEHMSALMGILPLQTRYLVWGELVLIHVMFPSSSFTAHLCGIVAALTISMG 291
            GFSGVLFG KV+      P  ++ +MG+ P+  RY  W ELVLIH+M P +SF  HL GI+  L  +MG
Sbjct:  143 GFSGVLFGLKVV-NNHYNPGGITQVMGV-PVANRYSCWVELVLIHIMSPGTSFVGHLAGILVGLLYTMG 209
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BLAST of mRNA_M-pyrifera_M_contig118519.3827.1 vs. uniprot
Match: A0A3B3ZK60_9GOBI (Rhomboid domain containing 1 n=2 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B3ZK60_9GOBI)

HSP 1 Score: 61.6 bits (148), Expect = 4.430e-9
Identity = 35/69 (50.72%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:   85 GFSGVLFGYKVLLTQGAPPEHMSALMGILPLQTRYLVWGELVLIHVMFPSSSFTAHLCGIVAALTISMG 291
            GFSGVLFG KVL+    P   +S +MGI P+  RY  W ELVLIH+  P +SF  HL GI+  L  + G
Sbjct:  142 GFSGVLFGLKVLVNHYFPGG-VSYVMGI-PISNRYASWAELVLIHITSPGTSFIGHLSGILVGLLYTCG 208
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BLAST of mRNA_M-pyrifera_M_contig118519.3827.1 vs. uniprot
Match: UPI001EEA09C3 (LOW QUALITY PROTEIN: rhomboid-related protein 4 n=1 Tax=Silurus meridionalis TaxID=175797 RepID=UPI001EEA09C3)

HSP 1 Score: 61.6 bits (148), Expect = 4.740e-9
Identity = 39/97 (40.21%), Postives = 52/97 (53.61%), Query Frame = 1 
Query:    1 LSQFLYISCAYFRQQILGDATAMFTALSGFSGVLFGYKVLLTQGAPPEHMSALMGILPLQTRYLVWGELVLIHVMFPSSSFTAHLCGIVAALTISMG 291
            L+  +Y+       ++L D +       GFSGVLFG KV+      P   + +MG LP+  RY  W ELVLIH+M P +SF  HL GIV  L  + G
Sbjct:  114 LTGLVYLLLEAALTELLDDFSFSMQCAVGFSGVLFGLKVV-NNYYNPGGSTYIMG-LPVAKRYACWVELVLIHIMNPGTSFVGHLAGIVVGLLYTXG 208
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118519.3827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8J4UG06_CLAMG4.350e-1046.99Rhomboid-related protein 4 isoform X1 (Fragment) n... [more]
UPI001CC54DDE9.220e-1036.08rhomboid-related protein 4 n=1 Tax=Dromiciops glir... [more]
A0A673BX71_9TELE9.560e-1044.58Rhomboid domain containing 1 n=1 Tax=Sphaeramia or... [more]
A0A1B6DBH9_9HEMI1.340e-939.77Rhomboid domain-containing protein (Fragment) n=1 ... [more]
A0A673BUC4_9TELE1.740e-944.58Rhomboid domain containing 1 n=6 Tax=Sphaeramia or... [more]
A0A673C0K7_9TELE1.750e-944.58Rhomboid domain containing 1 n=2 Tax=Sphaeramia or... [more]
A0A2P6TCP9_CHLSO2.520e-941.49Rhomboid mitochondrial n=1 Tax=Chlorella sorokinia... [more]
A0A6P3W9Z0_CLUHA3.680e-949.28rhomboid-related protein 4 n=1 Tax=Clupea harengus... [more]
A0A3B3ZK60_9GOBI4.430e-950.72Rhomboid domain containing 1 n=2 Tax=Periophthalmu... [more]
UPI001EEA09C34.740e-940.21LOW QUALITY PROTEIN: rhomboid-related protein 4 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118519contigM-pyrifera_M_contig118519:226..516 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score74.7
Seed ortholog evalue2.6e-11
Seed eggNOG ortholog45351.EDO30242
Preferred nameRHBDD1
KEGG koko:K09651
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0006464,GO:0006508,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006986,GO:0007276,GO:0007283,GO:0008104,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0009056,GO:0009057,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010604,GO:0010628,GO:0010941,GO:0010954,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016787,GO:0017171,GO:0019222,GO:0019538,GO:0019953,GO:0022412,GO:0022414,GO:0030154,GO:0030162,GO:0030163,GO:0030176,GO:0030970,GO:0031224,GO:0031227,GO:0031293,GO:0031323,GO:0031325,GO:0031984,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032504,GO:0032527,GO:0032879,GO:0033036,GO:0033554,GO:0033619,GO:0034613,GO:0034620,GO:0034644,GO:0034976,GO:0035966,GO:0035967,GO:0036211,GO:0036503,GO:0042175,GO:0042176,GO:0042221,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044322,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045184,GO:0045732,GO:0045862,GO:0046907,GO:0048232,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048609,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0060255,GO:0060548,GO:0065007,GO:0070011,GO:0070613,GO:0070727,GO:0070887,GO:0071214,GO:0071310,GO:0071478,GO:0071482,GO:0071702,GO:0071704,GO:0071705,GO:0080090,GO:0098827,GO:0104004,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1903317,GO:1903319,GO:1903513,GO:1904211
EggNOG free text desc.Rhomboid domain containing 1
EggNOG OGs38GPG@33154,3BKG7@33208,KOG2632@1,KOG2632@2759
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons1
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815704.8739414-CDS-M-pyrifera_M_contig118519:225..5161622815704.8739414-CDS-M-pyrifera_M_contig118519:225..516Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118519 226..516 -
1692277530.571441-CDS-M-pyrifera_M_contig118519:225..5161692277530.571441-CDS-M-pyrifera_M_contig118519:225..516Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118519 226..516 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118519.3827.1prot_M-pyrifera_M_contig118519.3827.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118519 226..516 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118519.3827.1

>prot_M-pyrifera_M_contig118519.3827.1 ID=prot_M-pyrifera_M_contig118519.3827.1|Name=mRNA_M-pyrifera_M_contig118519.3827.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=97bp
LSQFLYISCAYFRQQILGDATAMFTALSGFSGVLFGYKVLLTQGAPPEHM
SALMGILPLQTRYLVWGELVLIHVMFPSSSFTAHLCGIVAALTISMG
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mRNA from alignment at M-pyrifera_M_contig118519:226..516-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118519.3827.1 ID=mRNA_M-pyrifera_M_contig118519.3827.1|Name=mRNA_M-pyrifera_M_contig118519.3827.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=291bp|location=Sequence derived from alignment at M-pyrifera_M_contig118519:226..516- (Macrocystis pyrifera P11B4 male)
CTTTCCCAGTTCCTCTACATTAGCTGTGCGTACTTCCGCCAGCAGATCCT
AGGTGACGCCACAGCAATGTTCACAGCCCTCAGTGGATTCTCAGGGGTCC
TCTTTGGCTACAAGGTGCTGTTGACGCAAGGGGCACCGCCCGAGCACATG
TCTGCACTGATGGGCATTCTGCCCCTCCAAACAAGGTATCTGGTGTGGGG
CGAGTTGGTCCTCATTCACGTCATGTTCCCCAGTAGCTCGTTCACCGCTC
ATCTCTGTGGAATCGTTGCGGCGCTCACGATCAGCATGGGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118519:226..516-

>mRNA_M-pyrifera_M_contig118519.3827.1 ID=mRNA_M-pyrifera_M_contig118519.3827.1|Name=mRNA_M-pyrifera_M_contig118519.3827.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=582bp|location=Sequence derived from alignment at M-pyrifera_M_contig118519:226..516- (Macrocystis pyrifera P11B4 male)
CTTTCCCAGTTCCTCTACATTAGCTGTGCGTACTTCCGCCAGCAGATCCT
AGGTGACGCCACAGCAATGTTCACAGCCCTCAGTGGATTCTCAGGGGTCC
TCTTTGGCTACAAGGTGCTGTTGACGCAAGGGGCACCGCCCGAGCACATG
TCTGCACTGATGGGCATTCTGCCCCTCCAAACAAGGTATCTGGTGTGGGG
CGAGTTGGTCCTCATTCACGTCATGTTCCCCAGTAGCTCGTTCACCGCTC
ATCTCTGTGGAATCGTTGCGGCGCTCACGATCAGCATGGGCCTTTCCCAG
TTCCTCTACATTAGCTGTGCGTACTTCCGCCAGCAGATCCTAGGTGACGC
CACAGCAATGTTCACAGCCCTCAGTGGATTCTCAGGGGTCCTCTTTGGCT
ACAAGGTGCTGTTGACGCAAGGGGCACCGCCCGAGCACATGTCTGCACTG
ATGGGCATTCTGCCCCTCCAAACAAGGTATCTGGTGTGGGGCGAGTTGGT
CCTCATTCACGTCATGTTCCCCAGTAGCTCGTTCACCGCTCATCTCTGTG
GAATCGTTGCGGCGCTCACGATCAGCATGGGC
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