prot_M-pyrifera_M_contig118485.3819.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig118485.3819.1
Unique Nameprot_M-pyrifera_M_contig118485.3819.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length104
Homology
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BLAST of mRNA_M-pyrifera_M_contig118485.3819.1 vs. uniprot
Match: UPI0005395FF1 (heterogeneous nuclear ribonucleoprotein 1-like n=3 Tax=Camelina sativa TaxID=90675 RepID=UPI0005395FF1)

HSP 1 Score: 109 bits (272), Expect = 5.890e-26
Identity = 52/116 (44.83%), Postives = 78/116 (67.24%), Query Frame = 0 
Query:    1 DVTEIEPKRAVPRDQIQ------------APAGGAGGGSRTKKVFVGGLPAALTEQEFKTFFERFGVVTEAQILLEKETQRPRGFGFITYDAEDSVDRLFAEASSFDLMGKTVRAR 104
            D   +E K+AVPRD  Q            +P  G GGG+RTKK+FVGGLP+++TE+EFK +F++FG + +  ++ +  TQRPRGFGFIT+D++D+VDR+  + +  +L GK V  +
Sbjct:   72 DGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGGARTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLLK-TFHELNGKLVEVK 186
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BLAST of mRNA_M-pyrifera_M_contig118485.3819.1 vs. uniprot
Match: A0A0V0HDD7_SOLCH (Putative ovule protein (Fragment) n=2 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HDD7_SOLCH)

HSP 1 Score: 103 bits (258), Expect = 2.490e-25
Identity = 53/113 (46.90%), Postives = 74/113 (65.49%), Query Frame = 0 
Query:    1 DVTEIEPKRAVPRDQIQAPAGG---------AGGGSRTKKVFVGGLPAALTEQEFKTFFERFGVVTEAQILLEKETQRPRGFGFITYDAEDSVDRLFAEASSFDLMGKTVRAR 104
            D   +E KRA+ R++ Q P  G          GG +RTKK+FVGGLP  LTE+ F+ +FE FG VT+  I+ +++T RPRGFGFI++D+ED+VDR+  + S  DL GK V  +
Sbjct:   71 DGRTVEAKRALSREEQQGPKSGNMGSARSFGGGGNTRTKKIFVGGLPPTLTEEGFRQYFESFGNVTDVVIMYDQQTNRPRGFGFISFDSEDAVDRVL-QKSFHDLNGKQVEVK 182
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BLAST of mRNA_M-pyrifera_M_contig118485.3819.1 vs. uniprot
Match: UPI000B8C9C06 (heterogeneous nuclear ribonucleoprotein 1 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8C9C06)

HSP 1 Score: 106 bits (264), Expect = 2.890e-25
Identity = 52/110 (47.27%), Postives = 76/110 (69.09%), Query Frame = 0 
Query:    1 DVTEIEPKRAVPRD------QIQAPAGGAGGGSRTKKVFVGGLPAALTEQEFKTFFERFGVVTEAQILLEKETQRPRGFGFITYDAEDSVDRLFAEASSFDLMGKTVRAR 104
            D   +E K+AVPRD      +I +   G+ G  RTKK+FVGGLP+++TE +FK +F++FG +T+  ++ +  TQRPRGFGFITYDAED+VDR+  + +  +L GK V  +
Sbjct:   71 DGRSVEAKKAVPRDDQHILNRIASSPHGSPGHGRTKKIFVGGLPSSITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDAEDAVDRVLHK-TFHELNGKMVEVK 179
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BLAST of mRNA_M-pyrifera_M_contig118485.3819.1 vs. uniprot
Match: A0A6A4NBV0_LUPAL (Putative RNA recognition motif domain-containing protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A4NBV0_LUPAL)

HSP 1 Score: 100 bits (249), Expect = 4.160e-25
Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = 0 
Query:    1 DVTEIEPKRAVPRDQIQA----PAG--GAGGGSRTKKVFVGGLPAALTEQEFKTFFERFGVVTEAQILLEKETQRPRGFGFITYDAEDSVDRL 87
            D   +E K+AVPRD   A    P G  G+ G  RTKK+FVGGLP+ +TE +FK +F++FG +T+  ++ +  TQRPRGFGFITYD+E++VD++
Sbjct:   34 DGRTVEAKKAVPRDDQHAINRQPGGVLGSPGPGRTKKIFVGGLPSTITESDFKQYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 126
[Close]
BLAST of mRNA_M-pyrifera_M_contig118485.3819.1 vs. uniprot
Match: A0A804JFH8_MUSAM (Uncharacterized protein n=5 Tax=Musaceae TaxID=4637 RepID=A0A804JFH8_MUSAM)

HSP 1 Score: 107 bits (266), Expect = 4.780e-25
Identity = 53/107 (49.53%), Postives = 73/107 (68.22%), Query Frame = 0 
Query:    5 IEPKRAVPRDQIQ-------APAGGAGGGSRTKKVFVGGLPAALTEQEFKTFFERFGVVTEAQILLEKETQRPRGFGFITYDAEDSVDRLFAEASSFDLMGKTVRAR 104
            +E K+AVPRD  Q       +  G  G G RTKK+FVGGLP+ LTE +FK +F++FG +T+  ++ +  TQRPRGFGFITYD+ED+VDR+  + S  +L GK V  +
Sbjct:   75 VEAKKAVPRDDQQILNRNNSSVHGSPGPGGRTKKIFVGGLPSTLTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDRVLFK-SFHELNGKMVEVK 180
[Close]
BLAST of mRNA_M-pyrifera_M_contig118485.3819.1 vs. uniprot
Match: A0A7I8LGI5_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LGI5_SPIIN)

HSP 1 Score: 105 bits (262), Expect = 5.620e-25
Identity = 51/104 (49.04%), Postives = 70/104 (67.31%), Query Frame = 0 
Query:    1 DVTEIEPKRAVPRDQIQAPAGGAGGGSRTKKVFVGGLPAALTEQEFKTFFERFGVVTEAQILLEKETQRPRGFGFITYDAEDSVDRLFAEASSFDLMGKTVRAR 104
            D   +E KR VPR+ +Q       GGS+TKK+FVGGLP +LTE+EFK +F  +G V E QI+L+ +T R RGFGFIT+++EDSVD + ++     L GK V  +
Sbjct:  140 DGRTVEVKRTVPRESMQTR-----GGSKTKKIFVGGLPTSLTEEEFKDYFSSYGAVVEHQIMLDHKTGRSRGFGFITFESEDSVDEVMSQGKMHSLGGKQVEIK 238
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BLAST of mRNA_M-pyrifera_M_contig118485.3819.1 vs. uniprot
Match: A0A8J5KGU5_ZINOF (Uncharacterized protein n=4 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5KGU5_ZINOF)

HSP 1 Score: 107 bits (266), Expect = 6.150e-25
Identity = 52/106 (49.06%), Postives = 74/106 (69.81%), Query Frame = 0 
Query:    5 IEPKRAVPRDQIQ------APAGGAGGGSRTKKVFVGGLPAALTEQEFKTFFERFGVVTEAQILLEKETQRPRGFGFITYDAEDSVDRLFAEASSFDLMGKTVRAR 104
            +E K+AVPRD  Q      +   G+ G  RTKK+FVGGLP+ +TE EFK +F++FG +T+  ++ +  TQRPRGFGFITYD+ED+VD++  + S  +L GKTV  +
Sbjct:  122 VEAKKAVPRDDQQILNRNASSVHGSPGPGRTKKIFVGGLPSTITESEFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDKVLYK-SFHELNGKTVEVK 226
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BLAST of mRNA_M-pyrifera_M_contig118485.3819.1 vs. uniprot
Match: A0A3B6JJA1_WHEAT (Uncharacterized protein n=5 Tax=Triticinae TaxID=1648030 RepID=A0A3B6JJA1_WHEAT)

HSP 1 Score: 104 bits (259), Expect = 8.670e-25
Identity = 52/106 (49.06%), Postives = 74/106 (69.81%), Query Frame = 0 
Query:    5 IEPKRAVPRDQIQA------PAGGAGGGSRTKKVFVGGLPAALTEQEFKTFFERFGVVTEAQILLEKETQRPRGFGFITYDAEDSVDRLFAEASSFDLMGKTVRAR 104
            +E K+AVPRD  QA       A G+ G SRTKK+FVGGL + +TE +F+T+FE+FG +T+  ++ +  TQRPRGFGFITYD+ED+VD+   + +  +L GK V  +
Sbjct:   75 VEAKKAVPRDDQQALSKSGGSAHGSPGPSRTKKIFVGGLASTVTEADFRTYFEQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALFK-TFHELNGKMVEVK 179
[Close]
BLAST of mRNA_M-pyrifera_M_contig118485.3819.1 vs. uniprot
Match: A0A392QEZ6_9FABA (Heterogeneous nuclear ribonucleoprotein 1-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392QEZ6_9FABA)

HSP 1 Score: 101 bits (251), Expect = 1.190e-24
Identity = 50/107 (46.73%), Postives = 74/107 (69.16%), Query Frame = 0 
Query:    4 EIEPKRAVPRDQ---IQAPAG---GAGGGSRTKKVFVGGLPAALTEQEFKTFFERFGVVTEAQILLEKETQRPRGFGFITYDAEDSVDRLFAEASSFDLMGKTVRAR 104
            ++E K+AVPRD    I    G   G+ G  RTKK+FVGGLP+ +TE +FK +F++FG +T+  ++ +  TQRPRGFGFITYD+E++VDR+  + +  +L GK V  +
Sbjct:   10 QVEAKKAVPRDDQYNITRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYK-TFHELNGKMVEVK 115
[Close]
BLAST of mRNA_M-pyrifera_M_contig118485.3819.1 vs. uniprot
Match: A0A446QY67_TRITD (RRM domain-containing protein n=3 Tax=Poaceae TaxID=4479 RepID=A0A446QY67_TRITD)

HSP 1 Score: 105 bits (261), Expect = 1.220e-24
Identity = 52/107 (48.60%), Postives = 75/107 (70.09%), Query Frame = 0 
Query:    4 EIEPKRAVPRDQIQA------PAGGAGGGSRTKKVFVGGLPAALTEQEFKTFFERFGVVTEAQILLEKETQRPRGFGFITYDAEDSVDRLFAEASSFDLMGKTVRAR 104
            ++E K+AVPRD  QA       A G+ G SRTKK+FVGGL + +TE +F+T+FE+FG +T+  ++ +  TQRPRGFGFITYD+ED+VD+   + +  +L GK V  +
Sbjct:    7 QVEAKKAVPRDDQQALSKSGGSAHGSPGPSRTKKIFVGGLASTVTEADFRTYFEQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALFK-TFHELNGKMVEVK 112
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118485.3819.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0005395FF15.890e-2644.83heterogeneous nuclear ribonucleoprotein 1-like n=3... [more]
A0A0V0HDD7_SOLCH2.490e-2546.90Putative ovule protein (Fragment) n=2 Tax=Solanum ... [more]
UPI000B8C9C062.890e-2547.27heterogeneous nuclear ribonucleoprotein 1 n=1 Tax=... [more]
A0A6A4NBV0_LUPAL4.160e-2550.54Putative RNA recognition motif domain-containing p... [more]
A0A804JFH8_MUSAM4.780e-2549.53Uncharacterized protein n=5 Tax=Musaceae TaxID=463... [more]
A0A7I8LGI5_SPIIN5.620e-2549.04Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
A0A8J5KGU5_ZINOF6.150e-2549.06Uncharacterized protein n=4 Tax=Zingiber officinal... [more]
A0A3B6JJA1_WHEAT8.670e-2549.06Uncharacterized protein n=5 Tax=Triticinae TaxID=1... [more]
A0A392QEZ6_9FABA1.190e-2446.73Heterogeneous nuclear ribonucleoprotein 1-like (Fr... [more]
A0A446QY67_TRITD1.220e-2448.60RRM domain-containing protein n=3 Tax=Poaceae TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 31..104
e-value: 5.4E-18
score: 75.8
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 32..102
e-value: 1.3E-15
score: 57.0
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 30..104
score: 16.585
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 4..104
e-value: 1.7E-20
score: 75.3
NoneNo IPR availablePANTHERPTHR15241TRANSFORMER-2-RELATEDcoord: 16..101
NoneNo IPR availablePANTHERPTHR15241:SF205HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1coord: 16..101
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 28..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118485contigM-pyrifera_M_contig118485:92..403 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118485.3819.1mRNA_M-pyrifera_M_contig118485.3819.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig118485 92..403 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig118485.3819.1 ID=prot_M-pyrifera_M_contig118485.3819.1|Name=mRNA_M-pyrifera_M_contig118485.3819.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp
DVTEIEPKRAVPRDQIQAPAGGAGGGSRTKKVFVGGLPAALTEQEFKTFF
ERFGVVTEAQILLEKETQRPRGFGFITYDAEDSVDRLFAEASSFDLMGKT
VRAR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf