mRNA_M-pyrifera_M_contig118485.3819.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig118485.3819.1 vs. uniprot
Match: UPI0005395FF1 (heterogeneous nuclear ribonucleoprotein 1-like n=3 Tax=Camelina sativa TaxID=90675 RepID=UPI0005395FF1) HSP 1 Score: 109 bits (272), Expect = 5.890e-26 Identity = 52/116 (44.83%), Postives = 78/116 (67.24%), Query Frame = 1
Query: 1 DVTEIEPKRAVPRDQIQ------------APAGGAGGGSRTKKVFVGGLPAALTEQEFKTFFERFGVVTEAQILLEKETQRPRGFGFITYDAEDSVDRLFAEASSFDLMGKTVRAR 312
D +E K+AVPRD Q +P G GGG+RTKK+FVGGLP+++TE+EFK +F++FG + + ++ + TQRPRGFGFIT+D++D+VDR+ + + +L GK V +
Sbjct: 72 DGRTVEAKKAVPRDDQQVLKRHASPIHLMSPVHGGGGGARTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRVLLK-TFHELNGKLVEVK 186
BLAST of mRNA_M-pyrifera_M_contig118485.3819.1 vs. uniprot
Match: A0A0V0HDD7_SOLCH (Putative ovule protein (Fragment) n=2 Tax=Solanum chacoense TaxID=4108 RepID=A0A0V0HDD7_SOLCH) HSP 1 Score: 103 bits (258), Expect = 2.490e-25 Identity = 53/113 (46.90%), Postives = 74/113 (65.49%), Query Frame = 1
Query: 1 DVTEIEPKRAVPRDQIQAPAGG---------AGGGSRTKKVFVGGLPAALTEQEFKTFFERFGVVTEAQILLEKETQRPRGFGFITYDAEDSVDRLFAEASSFDLMGKTVRAR 312
D +E KRA+ R++ Q P G GG +RTKK+FVGGLP LTE+ F+ +FE FG VT+ I+ +++T RPRGFGFI++D+ED+VDR+ + S DL GK V +
Sbjct: 71 DGRTVEAKRALSREEQQGPKSGNMGSARSFGGGGNTRTKKIFVGGLPPTLTEEGFRQYFESFGNVTDVVIMYDQQTNRPRGFGFISFDSEDAVDRVL-QKSFHDLNGKQVEVK 182
BLAST of mRNA_M-pyrifera_M_contig118485.3819.1 vs. uniprot
Match: UPI000B8C9C06 (heterogeneous nuclear ribonucleoprotein 1 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8C9C06) HSP 1 Score: 106 bits (264), Expect = 2.890e-25 Identity = 52/110 (47.27%), Postives = 76/110 (69.09%), Query Frame = 1
Query: 1 DVTEIEPKRAVPRD------QIQAPAGGAGGGSRTKKVFVGGLPAALTEQEFKTFFERFGVVTEAQILLEKETQRPRGFGFITYDAEDSVDRLFAEASSFDLMGKTVRAR 312
D +E K+AVPRD +I + G+ G RTKK+FVGGLP+++TE +FK +F++FG +T+ ++ + TQRPRGFGFITYDAED+VDR+ + + +L GK V +
Sbjct: 71 DGRSVEAKKAVPRDDQHILNRIASSPHGSPGHGRTKKIFVGGLPSSITESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDAEDAVDRVLHK-TFHELNGKMVEVK 179
BLAST of mRNA_M-pyrifera_M_contig118485.3819.1 vs. uniprot
Match: A0A6A4NBV0_LUPAL (Putative RNA recognition motif domain-containing protein n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A4NBV0_LUPAL) HSP 1 Score: 100 bits (249), Expect = 4.160e-25 Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = 1
Query: 1 DVTEIEPKRAVPRDQIQA----PAG--GAGGGSRTKKVFVGGLPAALTEQEFKTFFERFGVVTEAQILLEKETQRPRGFGFITYDAEDSVDRL 261
D +E K+AVPRD A P G G+ G RTKK+FVGGLP+ +TE +FK +F++FG +T+ ++ + TQRPRGFGFITYD+E++VD++
Sbjct: 34 DGRTVEAKKAVPRDDQHAINRQPGGVLGSPGPGRTKKIFVGGLPSTITESDFKQYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKV 126
BLAST of mRNA_M-pyrifera_M_contig118485.3819.1 vs. uniprot
Match: A0A804JFH8_MUSAM (Uncharacterized protein n=5 Tax=Musaceae TaxID=4637 RepID=A0A804JFH8_MUSAM) HSP 1 Score: 107 bits (266), Expect = 4.780e-25 Identity = 53/107 (49.53%), Postives = 73/107 (68.22%), Query Frame = 1
Query: 13 IEPKRAVPRDQIQ-------APAGGAGGGSRTKKVFVGGLPAALTEQEFKTFFERFGVVTEAQILLEKETQRPRGFGFITYDAEDSVDRLFAEASSFDLMGKTVRAR 312
+E K+AVPRD Q + G G G RTKK+FVGGLP+ LTE +FK +F++FG +T+ ++ + TQRPRGFGFITYD+ED+VDR+ + S +L GK V +
Sbjct: 75 VEAKKAVPRDDQQILNRNNSSVHGSPGPGGRTKKIFVGGLPSTLTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDRVLFK-SFHELNGKMVEVK 180
BLAST of mRNA_M-pyrifera_M_contig118485.3819.1 vs. uniprot
Match: A0A7I8LGI5_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8LGI5_SPIIN) HSP 1 Score: 105 bits (262), Expect = 5.620e-25 Identity = 51/104 (49.04%), Postives = 70/104 (67.31%), Query Frame = 1
Query: 1 DVTEIEPKRAVPRDQIQAPAGGAGGGSRTKKVFVGGLPAALTEQEFKTFFERFGVVTEAQILLEKETQRPRGFGFITYDAEDSVDRLFAEASSFDLMGKTVRAR 312
D +E KR VPR+ +Q GGS+TKK+FVGGLP +LTE+EFK +F +G V E QI+L+ +T R RGFGFIT+++EDSVD + ++ L GK V +
Sbjct: 140 DGRTVEVKRTVPRESMQTR-----GGSKTKKIFVGGLPTSLTEEEFKDYFSSYGAVVEHQIMLDHKTGRSRGFGFITFESEDSVDEVMSQGKMHSLGGKQVEIK 238
BLAST of mRNA_M-pyrifera_M_contig118485.3819.1 vs. uniprot
Match: A0A8J5KGU5_ZINOF (Uncharacterized protein n=4 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5KGU5_ZINOF) HSP 1 Score: 107 bits (266), Expect = 6.150e-25 Identity = 52/106 (49.06%), Postives = 74/106 (69.81%), Query Frame = 1
Query: 13 IEPKRAVPRDQIQ------APAGGAGGGSRTKKVFVGGLPAALTEQEFKTFFERFGVVTEAQILLEKETQRPRGFGFITYDAEDSVDRLFAEASSFDLMGKTVRAR 312
+E K+AVPRD Q + G+ G RTKK+FVGGLP+ +TE EFK +F++FG +T+ ++ + TQRPRGFGFITYD+ED+VD++ + S +L GKTV +
Sbjct: 122 VEAKKAVPRDDQQILNRNASSVHGSPGPGRTKKIFVGGLPSTITESEFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDKVLYK-SFHELNGKTVEVK 226
BLAST of mRNA_M-pyrifera_M_contig118485.3819.1 vs. uniprot
Match: A0A3B6JJA1_WHEAT (Uncharacterized protein n=5 Tax=Triticinae TaxID=1648030 RepID=A0A3B6JJA1_WHEAT) HSP 1 Score: 104 bits (259), Expect = 8.670e-25 Identity = 52/106 (49.06%), Postives = 74/106 (69.81%), Query Frame = 1
Query: 13 IEPKRAVPRDQIQA------PAGGAGGGSRTKKVFVGGLPAALTEQEFKTFFERFGVVTEAQILLEKETQRPRGFGFITYDAEDSVDRLFAEASSFDLMGKTVRAR 312
+E K+AVPRD QA A G+ G SRTKK+FVGGL + +TE +F+T+FE+FG +T+ ++ + TQRPRGFGFITYD+ED+VD+ + + +L GK V +
Sbjct: 75 VEAKKAVPRDDQQALSKSGGSAHGSPGPSRTKKIFVGGLASTVTEADFRTYFEQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALFK-TFHELNGKMVEVK 179
BLAST of mRNA_M-pyrifera_M_contig118485.3819.1 vs. uniprot
Match: A0A392QEZ6_9FABA (Heterogeneous nuclear ribonucleoprotein 1-like (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392QEZ6_9FABA) HSP 1 Score: 101 bits (251), Expect = 1.190e-24 Identity = 50/107 (46.73%), Postives = 74/107 (69.16%), Query Frame = 1
Query: 10 EIEPKRAVPRDQ---IQAPAG---GAGGGSRTKKVFVGGLPAALTEQEFKTFFERFGVVTEAQILLEKETQRPRGFGFITYDAEDSVDRLFAEASSFDLMGKTVRAR 312
++E K+AVPRD I G G+ G RTKK+FVGGLP+ +TE +FK +F++FG +T+ ++ + TQRPRGFGFITYD+E++VDR+ + + +L GK V +
Sbjct: 10 QVEAKKAVPRDDQYNITRQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYK-TFHELNGKMVEVK 115
BLAST of mRNA_M-pyrifera_M_contig118485.3819.1 vs. uniprot
Match: A0A446QY67_TRITD (RRM domain-containing protein n=3 Tax=Poaceae TaxID=4479 RepID=A0A446QY67_TRITD) HSP 1 Score: 105 bits (261), Expect = 1.220e-24 Identity = 52/107 (48.60%), Postives = 75/107 (70.09%), Query Frame = 1
Query: 10 EIEPKRAVPRDQIQA------PAGGAGGGSRTKKVFVGGLPAALTEQEFKTFFERFGVVTEAQILLEKETQRPRGFGFITYDAEDSVDRLFAEASSFDLMGKTVRAR 312
++E K+AVPRD QA A G+ G SRTKK+FVGGL + +TE +F+T+FE+FG +T+ ++ + TQRPRGFGFITYD+ED+VD+ + + +L GK V +
Sbjct: 7 QVEAKKAVPRDDQQALSKSGGSAHGSPGPSRTKKIFVGGLASTVTEADFRTYFEQFGTITDVVVMYDHNTQRPRGFGFITYDSEDAVDKALFK-TFHELNGKMVEVK 112 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118485.3819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig118485.3819.1 >prot_M-pyrifera_M_contig118485.3819.1 ID=prot_M-pyrifera_M_contig118485.3819.1|Name=mRNA_M-pyrifera_M_contig118485.3819.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=104bp DVTEIEPKRAVPRDQIQAPAGGAGGGSRTKKVFVGGLPAALTEQEFKTFFback to top mRNA from alignment at M-pyrifera_M_contig118485:92..403+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig118485.3819.1 ID=mRNA_M-pyrifera_M_contig118485.3819.1|Name=mRNA_M-pyrifera_M_contig118485.3819.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=312bp|location=Sequence derived from alignment at M-pyrifera_M_contig118485:92..403+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig118485:92..403+ >mRNA_M-pyrifera_M_contig118485.3819.1 ID=mRNA_M-pyrifera_M_contig118485.3819.1|Name=mRNA_M-pyrifera_M_contig118485.3819.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=624bp|location=Sequence derived from alignment at M-pyrifera_M_contig118485:92..403+ (Macrocystis pyrifera P11B4 male)back to top |