mRNA_M-pyrifera_M_contig11833.3789.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11833.3789.1
Unique NamemRNA_M-pyrifera_M_contig11833.3789.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig11833.3789.1 vs. uniprot
Match: D7FN52_ECTSI (Heat shock protein 40 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN52_ECTSI)

HSP 1 Score: 285 bits (728), Expect = 4.510e-90
Identity = 150/173 (86.71%), Postives = 161/173 (93.06%), Query Frame = 1
Query:    1 QALVKAQLKMGSDRESRKRPWEENELSSLAKAIVKFPAGSQNRWEHIAQFIAQATRAKEPFNKEDCIAKYQQIHAAPAGPQKVITPAVVAVPAAATPATSAPERPSRRQPKEDVWSRAQQQQLEKALVRFPMGMDKNERWASISAAVPGKSKKQCVERFKLVKTQLLAKKKAE 519
            +ALV AQLKMGSDRESRKR WEENELSSLAKAIVKFPAGSQNRWEHI+QFIAQATRAK+PF+KEDCIAKYQQ+HAAPAGPQKV+ PAV A  ++A  A SAPERPSRR+P+EDVWS+AQQQQLE AL RFPMGMDKNERWASISAAVPGKSKKQCVERFK VKTQLLAKKKAE
Sbjct:  442 EALVAAQLKMGSDRESRKRAWEENELSSLAKAIVKFPAGSQNRWEHISQFIAQATRAKDPFSKEDCIAKYQQLHAAPAGPQKVVAPAVAAASSSAN-ARSAPERPSRREPREDVWSQAQQQQLETALARFPMGMDKNERWASISAAVPGKSKKQCVERFKFVKTQLLAKKKAE 613          
BLAST of mRNA_M-pyrifera_M_contig11833.3789.1 vs. uniprot
Match: A0A7S3YDN6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YDN6_HETAK)

HSP 1 Score: 122 bits (305), Expect = 4.440e-30
Identity = 72/143 (50.35%), Postives = 88/143 (61.54%), Query Frame = 1
Query:   61 WEENELSSLAKAIVKFPAGSQNRWEHIAQFIAQATRAKEPFNKEDCIAKYQQIHAAPAGPQKVITPAVVAVPAAATPATSAPERPSRRQPKEDVWSRAQQQQLEKALVRFPMGMDKNERWASISAAVPGKSKKQCVERFKLVK 489
            W E ELS LAKA+ KFPAGSQNRW  I+ FIA     +   +KE+CI KYQ+I  AP    K     V    AA          PS R  +EDVW++ QQ  LE+ L + P  MDKNERW++ISA V GK+KKQCVERFK ++
Sbjct:  125 WSEEELSCLAKAVQKFPAGSQNRWLTISNFIAHMVHTER--SKEECIQKYQEIQTAPGSKPKAGGTKV----AAGAXXXXXXXGPSARASEEDVWTQDQQAALEEGLKKHPASMDKNERWSAISAGVEGKTKKQCVERFKALR 261          
BLAST of mRNA_M-pyrifera_M_contig11833.3789.1 vs. uniprot
Match: B7G4P2_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G4P2_PHATC)

HSP 1 Score: 117 bits (292), Expect = 3.450e-27
Identity = 67/150 (44.67%), Postives = 89/150 (59.33%), Query Frame = 1
Query:   61 WEENELSSLAKAIVKFPAGSQNRWEHIAQFIAQATRAKEPFNKEDCIAKYQQIHAAPAGPQKVITPAVVAVPAAATPATSAPERPSRRQPKEDVWSRAQQQQLEKALVRFPMGMDKNERWASISAAVPGKSKKQCVERFKLVKTQLLAKK 510
            W + ELS+LAKA+ K+P G  +RWE IA F+    +  EP +KE+CI KY  +    + P    T +   V AA+ P  S+       Q  EDVW+  Q QQL+  L   P  MDKNERW +I+  VPGKSKKQCV+RFK+++  L  KK
Sbjct:  433 WTKEELSALAKAVKKYPPGGSSRWEQIALFVNNLCKQDEPRSKEECIEKYNNVAKTHSKP----TESTNGVAAASEPENSS-------QSNEDVWTAEQDQQLQDGLAANPASMDKNERWTAITECVPGKSKKQCVQRFKVIRDALKKKK 571          
BLAST of mRNA_M-pyrifera_M_contig11833.3789.1 vs. uniprot
Match: A0A7S2SB83_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2SB83_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.640e-24
Identity = 68/165 (41.21%), Postives = 96/165 (58.18%), Query Frame = 1
Query:   19 QLKMGSDRESRKRPWEENELSSLAKAIVKFPAGSQNRWEHIAQFIAQATRAKEPFNKEDCIAKYQQIHAAPAGPQKVITPAVVAVPAAATPATSAPERPSRRQPKEDVWSRAQQQQLEKALVRFPMGMDKNERWASISAAVPGKSKKQCVERFKLVKTQLLAKKK 513
            Q ++   RE +  PW  +ELSSLAKA+ KFP G++NRW  + +++     +     +EDCI +  +I A+    +K +           T   +  +   +  P E VWS  QQ  LE AL +FP  MDKNERW SI+AAV GKSKK+CV RFK ++ ++LAKKK
Sbjct:  426 QKRLEKKREKQFAPWSADELSSLAKAMKKFPGGTRNRWMMVCKYLNTIPGSTVERTQEDCI-QQSKIMASDTEKRKDL----------GTSKAAFDQFQKKLAPSEAVWSNEQQAALEAALKKFPASMDKNERWKSIAAAVEGKSKKECVARFKELRAKVLAKKK 579          
BLAST of mRNA_M-pyrifera_M_contig11833.3789.1 vs. uniprot
Match: A0A7S2PG91_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PG91_9STRA)

HSP 1 Score: 107 bits (268), Expect = 8.390e-24
Identity = 60/157 (38.22%), Postives = 85/157 (54.14%), Query Frame = 1
Query:   58 PWEENELSSLAKAIVKFPAGSQNRWEHIAQFIAQATRAKEPFNKEDCIAKYQQIHAAPAGPQKVITPAVVAVPAAATPATSAPERPSRRQPKEDVWSRAQQQQLEKALVRFPMGMDKNERWASISAAVPGKSKKQCVERFKLVKTQLLAKKKAEKKA 528
            PW ++EL++L+KAI K+PAG   RW+ IA FI    + +EP  KE+CI KY  I +APA    +  PA                        +  W+  +   L+  L ++P  M+KNERW SI+  VPG+SKK+CVERFK ++  +   KKA   A
Sbjct:  502 PWTKDELAALSKAIKKYPAGGAARWDAIASFINNLCKQEEPRTKEECIEKYNLIASAPAAKDTIAAPA-----------------------DDKAWTEKEDTLLQDMLRKYPASMEKNERWKSIAEGVPGRSKKECVERFKAIREAVKTGKKARSNA 635          
BLAST of mRNA_M-pyrifera_M_contig11833.3789.1 vs. uniprot
Match: B8BZ84_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZ84_THAPS)

HSP 1 Score: 106 bits (264), Expect = 1.970e-23
Identity = 61/144 (42.36%), Postives = 85/144 (59.03%), Query Frame = 1
Query:   58 PWEENELSSLAKAIVKFPAGSQNRWEHIAQFIAQATRAKEPFNKEDCIAKYQQIHAAPAGPQKVITPAVVAVPAAATPATSAPERPSRRQPKEDVWSRAQQQQLEKALVRFPMGMDKNERWASISAAVPGKSKKQCVERFKLVK 489
            PW ++EL +LAKA+ K+PAG  NRWE IA F+    +  EP +KE+CI KY  I AA A P           P+ +T   +A +      P    W+  Q   L++ L ++P  MDKNERW SI+  VPG+SKK+CV+RFK ++
Sbjct:  387 PWTKDELGALAKAVKKYPAGGSNRWEAIALFVNNLCKQAEPRSKEECIEKYNSI-AASAAP-----------PSGSTDKDTAADGEDSGAP----WTEEQDSLLQEMLRKYPADMDKNERWKSIAKGVPGRSKKECVDRFKAIR 514          
BLAST of mRNA_M-pyrifera_M_contig11833.3789.1 vs. uniprot
Match: K0SEK9_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SEK9_THAOC)

HSP 1 Score: 104 bits (260), Expect = 9.060e-23
Identity = 60/152 (39.47%), Postives = 88/152 (57.89%), Query Frame = 1
Query:   55 RPWEENELSSLAKAIVKFPAGSQNRWEHIAQFIAQATRAKEPFNKEDCIAKYQQIHAAPAGPQKVITPAVVAVPAAATPATSAPERPSRRQPKEDVWSRAQQQQLEKALVRFPMGMDKNERWASISAAVPGKSKKQCVERFKLVKTQLLAKK 510
            +PW + EL++LAKA+ K+PAG  NRWE IA FI    + ++P  KE+CIA++ ++ ++P+             PAAA       +   +     D W+ AQ   L+  L ++P  MDKNERW+ I+  V GKSKKQCV RFK ++  +  KK
Sbjct:  502 KPWTKEELAALAKAVKKYPAGGANRWESIALFINNLCKQQDPRGKEECIAQFNKVTSSPS-------------PAAAPGGKE--DDAGKSAEAGDEWTDAQDAALQDMLRKYPASMDKNERWSKIAEGVEGKSKKQCVGRFKAIREAVKGKK 638          
BLAST of mRNA_M-pyrifera_M_contig11833.3789.1 vs. uniprot
Match: A0A1E7FW12_9STRA (DnaJ-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FW12_9STRA)

HSP 1 Score: 103 bits (257), Expect = 2.000e-22
Identity = 62/151 (41.06%), Postives = 86/151 (56.95%), Query Frame = 1
Query:   58 PWEENELSSLAKAIVKFPAGSQNRWEHIAQFIAQATRAKEPFNKEDCIAKYQQIHAAPAGPQKVITPAVVAVPAAATPATSAPERPSRRQPKEDVWSRAQQQQLEKALVRFPMGMDKNERWASISAAVPGKSKKQCVERFKLVKTQLLAKK 510
            P+ + E+S+L+K + KFPAG  NRW+ I+ +I    R  +P  KE+CI  + +++ A  G Q         +P   T         S      DVW+  Q QQL+K L  FP  ++KNERW+SIS  V GKSKK+CVERFK ++  L AKK
Sbjct:  425 PFTKEEMSALSKGVKKFPAGGGNRWDQISHYINNVCRPDDPRTKEECIEIFNKVNKA--GKQ---------LPNGNT---------SHAVDDSDVWNSEQDQQLQKGLTMFPSSIEKNERWSSISDEVTGKSKKECVERFKAIRDALKAKK 555          
BLAST of mRNA_M-pyrifera_M_contig11833.3789.1 vs. uniprot
Match: W7TYH1_9STRA (Subfamily c member 2 protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYH1_9STRA)

HSP 1 Score: 103 bits (256), Expect = 3.210e-22
Identity = 71/184 (38.59%), Postives = 95/184 (51.63%), Query Frame = 1
Query:    4 ALVKAQLKMGSDRESRKRPWEENELSSLAKAIVKFPAGSQNRWEHIAQFIAQATRAKEPFNKEDCIAKYQQIHAAPAGPQKVITPAVVAVPAAA------------TPATSAPERPSRRQPKEDVWSRAQQQQLEKALVRFPMGMDKNERWASISAAVPGKSKKQCVERFKLVKTQLLAKKKAE 519
            A   A+   G +   ++  W E EL  LAKA+V+FPAG+Q RW+ IA ++    R     +KE+CI +YQ + A       V    VVA    A               TS  E   +     D WS+ QQ+QLE  LV +P  M+KNERW  IS  V GKSKK+C ER+K ++  + AKKK E
Sbjct:  492 AHASAEKDGGEESSPKEAAWTEEELGVLAKAVVRFPAGTQKRWQCIADYLNHMVRGASLRSKEECIKQYQVVQAG------VSKSRVVAATGGAGAGGGSEGRKSGKTGTSRGEDNGKAVASGDGWSQEQQKQLEAGLVTYPASMEKNERWKRISEGVQGKSKKECAERYKALRAAV-AKKKEE 668          
BLAST of mRNA_M-pyrifera_M_contig11833.3789.1 vs. uniprot
Match: A0A1Z5JZ63_FISSO (DnaJ homolog subfamily C member 2 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JZ63_FISSO)

HSP 1 Score: 99.4 bits (246), Expect = 6.210e-21
Identity = 57/146 (39.04%), Postives = 77/146 (52.74%), Query Frame = 1
Query:   61 WEENELSSLAKAIVKFPAGSQNRWEHIAQFIAQATRAKEPFNKEDCIAKYQQIHAAPAGPQKVITPAVVAVPAAATPATSAPERPSRRQPKEDVWSRAQQQQLEKALVRFPMGMDKNERWASISAAVPGKSKKQCVERFKLVKTQL 498
            W + E+S+LAK I KFPAG  NRW+ IA ++    R   P  +++CI KY  +    A   K      V            P+  +    +   W+  Q QQL+  L +FP  MDKNERWASI+  V GKSKK CV+RFK ++  L
Sbjct:  419 WSQEEMSALAKGIKKFPAGGANRWDQIANYVNNLCRQDVPRTRQECIDKYNAL----ARETKNTDSTTV----------EEPKNGADNGDENSEWTAEQDQQLQDGLTKFPATMDKNERWASIAKGVTGKSKKDCVQRFKAIREAL 550          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11833.3789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN52_ECTSI4.510e-9086.71Heat shock protein 40 n=2 Tax=Ectocarpus TaxID=287... [more]
A0A7S3YDN6_HETAK4.440e-3050.35Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
B7G4P2_PHATC3.450e-2744.67Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2SB83_9STRA3.640e-2441.21Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A7S2PG91_9STRA8.390e-2438.22Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
B8BZ84_THAPS1.970e-2342.36Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
K0SEK9_THAOC9.060e-2339.47Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A1E7FW12_9STRA2.000e-2241.06DnaJ-domain-containing protein n=1 Tax=Fragilariop... [more]
W7TYH1_9STRA3.210e-2238.59Subfamily c member 2 protein n=3 Tax=Monodopsidace... [more]
A0A1Z5JZ63_FISSO6.210e-2139.04DnaJ homolog subfamily C member 2 n=2 Tax=Fistulif... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11833contigM-pyrifera_M_contig11833:383..1935 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score278.5
Seed ortholog evalue2.2e-72
Seed eggNOG ortholog2880.D7FN52
KEGG koko:K09522
Hectar predicted targeting categoryother localisation
GOsGO:0000082,GO:0000122,GO:0000278,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0000988,GO:0000989,GO:0001012,GO:0001067,GO:0001076,GO:0001077,GO:0001134,GO:0001135,GO:0001228,GO:0001701,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002697,GO:0002699,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006996,GO:0007049,GO:0007275,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010638,GO:0016043,GO:0016070,GO:0017145,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019904,GO:0022402,GO:0022407,GO:0022409,GO:0030001,GO:0030097,GO:0030098,GO:0030099,GO:0030154,GO:0030155,GO:0030183,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032774,GO:0033043,GO:0033044,GO:0034097,GO:0034641,GO:0034645,GO:0034654,GO:0035295,GO:0042113,GO:0042221,GO:0042592,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043370,GO:0043372,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045321,GO:0045580,GO:0045582,GO:0045595,GO:0045597,GO:0045619,GO:0045621,GO:0045622,GO:0045624,GO:0045785,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0046634,GO:0046635,GO:0046637,GO:0046638,GO:0046649,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048536,GO:0048538,GO:0048565,GO:0048566,GO:0048568,GO:0048583,GO:0048584,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0048872,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050867,GO:0050870,GO:0050896,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051249,GO:0051251,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051301,GO:0051569,GO:0051570,GO:0051571,GO:0051574,GO:0051716,GO:0055123,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070741,GO:0070838,GO:0070887,GO:0071310,GO:0071345,GO:0071354,GO:0071704,GO:0071840,GO:0071987,GO:0072511,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902105,GO:1902107,GO:1902275,GO:1902679,GO:1902680,GO:1903037,GO:1903039,GO:1903047,GO:1903506,GO:1903507,GO:1903508,GO:1903706,GO:1903708,GO:1905269,GO:1990823,GO:1990830,GO:1990837,GO:2000026,GO:2000112,GO:2000113,GO:2000514,GO:2000516,GO:2001141,GO:2001252
EggNOG free text desc.ubiquitin modification-dependent histone binding
EggNOG OGsKOG0724@1,KOG0724@2759
Ec32 ortholog descriptionDnaJ (Hsp40) and SANT/Myb domain transcription factor
Ec32 orthologEc-06_008420.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03110
Exons3
Model size555
Cds size528
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11833.3789.1prot_M-pyrifera_M_contig11833.3789.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11833 410..1935 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.6409469-UTR-M-pyrifera_M_contig11833:382..4091622815702.6409469-UTR-M-pyrifera_M_contig11833:382..409Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11833 383..409 +
1692277529.4538274-UTR-M-pyrifera_M_contig11833:382..4091692277529.4538274-UTR-M-pyrifera_M_contig11833:382..409Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig11833 383..409 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.6540182-CDS-M-pyrifera_M_contig11833:409..5091622815702.6540182-CDS-M-pyrifera_M_contig11833:409..509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11833 410..509 +
1692277529.4639988-CDS-M-pyrifera_M_contig11833:409..5091692277529.4639988-CDS-M-pyrifera_M_contig11833:409..509Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11833 410..509 +
1622815702.6702144-CDS-M-pyrifera_M_contig11833:1080..12861622815702.6702144-CDS-M-pyrifera_M_contig11833:1080..1286Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11833 1081..1286 +
1692277529.4717507-CDS-M-pyrifera_M_contig11833:1080..12861692277529.4717507-CDS-M-pyrifera_M_contig11833:1080..1286Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11833 1081..1286 +
1622815702.6857843-CDS-M-pyrifera_M_contig11833:1713..19351622815702.6857843-CDS-M-pyrifera_M_contig11833:1713..1935Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11833 1714..1935 +
1692277529.4795856-CDS-M-pyrifera_M_contig11833:1713..19351692277529.4795856-CDS-M-pyrifera_M_contig11833:1713..1935Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11833 1714..1935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11833.3789.1

>prot_M-pyrifera_M_contig11833.3789.1 ID=prot_M-pyrifera_M_contig11833.3789.1|Name=mRNA_M-pyrifera_M_contig11833.3789.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=176bp
MGSDRESRKRPWEENELSSLAKAIVKFPAGSQNRWEHIAQFIAQATRAKE
PFNKEDCIAKYQQIHAAPAGPQKVITPAVVAVPAAATPATSAPERPSRRQ
PKEDVWSRAQQQQLEKALVRFPMGMDKNERWASISAAVPGKSKKQCVERF
KLVKTQLLAKKKAEKKAAAEAVAVNG
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mRNA from alignment at M-pyrifera_M_contig11833:383..1935+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11833.3789.1 ID=mRNA_M-pyrifera_M_contig11833.3789.1|Name=mRNA_M-pyrifera_M_contig11833.3789.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1553bp|location=Sequence derived from alignment at M-pyrifera_M_contig11833:383..1935+ (Macrocystis pyrifera P11B4 male)
CAGGCTCTGGTGAAGGCTCAGTTGAAGATGGGCTCCGACCGCGAGTCGCG CAAGCGTCCTTGGGAAGAGAACGAGCTGTCCTCCCTCGCGAAAGCGATCG TCAAGTTCCCTGCGGGTTCTCAAAACCGTGAGCAACGACGAGTGTCGTCC TTTCCTATTTTTTTTCCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTCTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNCCGGCCCCGGGCGTG GTCTCTGTGGCGTGGGGTTCCCCGGGTGTCCCCCTTTCCTTTTTTTTTCC CCTTTTTTTTTTTTTTTTTTTTTTTTTCTTGAGTTGTTTCGTTGCATCGC AGTGTCCCTTTTTTTGTTTTCTTGCAAGTCACGCCCCTCCCTTCTCTGTA AGTATCTCTTTTTTTAGCAGAATCCTCAATTATGTTACTTTTAGTCACTC GTAGTTTTCGGGGGAATTTTTTTCCTCCCAACGTTTTGTCCATTTTTTTT TCGTGTTTTGTAAAAAAAAAATTCCCCATTTTGTTTTCATCCAACTTTTT TGTTTTCAACTTTTTTACCTTTTGAATATTTCTTCTTCTGTTTTTTTTCT TTTTTGGCGTTCTTATCGTGTCGTACTCTGTACCCAATCCCCCATCAGGC TGGGAGCACATCGCGCAGTTCATCGCACAAGCAACACGCGCCAAAGAGCC GTTCAACAAAGAGGACTGCATCGCCAAGTACCAGCAGATCCACGCCGCCC CCGCCGGCCCCCAGAAGGTCATCACGCCGGCGGTGGTGGCAGTCCCTGCC GCAGCCACCCCCGCGACGTCTGCGCCGGAGCGACCTTCCCGCCGACAGCC CAAGGTGGGTGTGTGTGTGCGGACCCTGGGGAGTTGCTTTCAGCGTGCAG GAGGGATGGGGGCGCGGGGGGTTGAACGTCCTTCTTTGGCCCGCACCTTG GATCGTGGATGCGTGCGTGTCTCGAAGTCTCAATACTCAGTACCTGGTGT ATTGGGTTGTTTTTCGTGTAGTTGTGTCCGCCATGATTTTTTGTGTGCTG CGTCGTCGCTACGTATGATGTACGTGTTATCGTGTCCATGGTTTTGTGAT TTGTTTTTTGGGTGGGGATGTCTTGAGAGTGTGAAAGTGTCTTACATCAA CCTGTTTTTTTTTTAGGGTTTTTGGATCTCTTAACCATGGCGTGTTTTTG TTGTGCGCATGTGCGCATGTGGTGTGGGTGCTTGTGCTTACGGTTGCGTG CATCCGTCCGTCTGGTATTGTCTGCGCGCAGGAGGACGTGTGGAGCCGGG CCCAGCAGCAGCAGCTTGAGAAGGCCCTGGTCCGCTTCCCCATGGGCATG GACAAAAACGAGCGATGGGCGTCCATCTCCGCCGCGGTTCCCGGCAAAAG CAAAAAGCAGTGCGTCGAGCGCTTCAAGCTCGTCAAGACGCAGCTGCTGG CCAAGAAAAAGGCCGAGAAAAAGGCCGCGGCGGAGGCGGTGGCGGTGAAC GGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11833:383..1935+

>mRNA_M-pyrifera_M_contig11833.3789.1 ID=mRNA_M-pyrifera_M_contig11833.3789.1|Name=mRNA_M-pyrifera_M_contig11833.3789.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1056bp|location=Sequence derived from alignment at M-pyrifera_M_contig11833:383..1935+ (Macrocystis pyrifera P11B4 male)
ATGGGCTCCGACCGCGAGTCGCGCAAGCGTCCTTGGGAAGAGAACGAGCT
GTCCTCCCTCGCGAAAGCGATCGTCAAGTTCCCTGCGGGTTCTCAAAACC
ATGGGCTCCGACCGCGAGTCGCGCAAGCGTCCTTGGGAAGAGAACGAGCT
GTCCTCCCTCGCGAAAGCGATCGTCAAGTTCCCTGCGGGTTCTCAAAACC
GCTGGGAGCACATCGCGCAGTTCATCGCACAAGCAACACGCGCCAAAGAG
CCGTTCAACAAAGAGGACTGCATCGCCAAGTACCAGCAGATCCACGCCGC
CCCCGCCGGCCCCCAGAAGGTCATCACGCCGGCGGTGGTGGCAGTCCCTG
CCGCAGCCACCCCCGCGACGTCTGCGCCGGAGCGACCTTCCCGCCGACAG
CCCAAGGCTGGGAGCACATCGCGCAGTTCATCGCACAAGCAACACGCGCC
AAAGAGCCGTTCAACAAAGAGGACTGCATCGCCAAGTACCAGCAGATCCA
CGCCGCCCCCGCCGGCCCCCAGAAGGTCATCACGCCGGCGGTGGTGGCAG
TCCCTGCCGCAGCCACCCCCGCGACGTCTGCGCCGGAGCGACCTTCCCGC
CGACAGCCCAAGGAGGACGTGTGGAGCCGGGCCCAGCAGCAGCAGCTTGA
GAAGGCCCTGGTCCGCTTCCCCATGGGCATGGACAAAAACGAGCGATGGG
CGTCCATCTCCGCCGCGGTTCCCGGCAAAAGCAAAAAGCAGTGCGTCGAG
CGCTTCAAGCTCGTCAAGACGCAGCTGCTGGCCAAGAAAAAGGCCGAGAA
AAAGGCCGCGGCGGAGGCGGTGGCGGTGAACGGGGAGGACGTGTGGAGCC
GGGCCCAGCAGCAGCAGCTTGAGAAGGCCCTGGTCCGCTTCCCCATGGGC
ATGGACAAAAACGAGCGATGGGCGTCCATCTCCGCCGCGGTTCCCGGCAA
AAGCAAAAAGCAGTGCGTCGAGCGCTTCAAGCTCGTCAAGACGCAGCTGC
TGGCCAAGAAAAAGGCCGAGAAAAAGGCCGCGGCGGAGGCGGTGGCGGTG
AACGGG
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