mRNA_M-pyrifera_M_contig118204.3772.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig118204.3772.1 vs. uniprot
Match: A0A565AYX4_9BRAS (V-SNARE domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565AYX4_9BRAS) HSP 1 Score: 60.5 bits (145), Expect = 7.000e-9 Identity = 36/87 (41.38%), Postives = 56/87 (64.37%), Query Frame = 1
Query: 10 RMERGTTVLEEARRTLAETEEVGVSITSELSRNRTTLESARVKVHGVHEETDLARSILRSMDRRECRFKILIAVIAIVLIGLIALII 270
R++R + + E+RRT+ ETEE+GV+I +LS+ R TL A K+HGV + D ++ +L +M RR R K ++ + + LI I LII
Sbjct: 130 RLDRSSDRIRESRRTMLETEEIGVAIVQDLSQQRQTLLHAHTKLHGVDDAIDKSKKVLTAMSRRMTRNKWIVTAVIVALILAIILII 216
BLAST of mRNA_M-pyrifera_M_contig118204.3772.1 vs. uniprot
Match: A0A7S2UKP9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKP9_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 1.970e-8 Identity = 36/80 (45.00%), Postives = 56/80 (70.00%), Query Frame = 1
Query: 34 LEEARRTLAETEEVGVSITSELSRNRTTLESARVKVHGVHEETDLARSILRSMDRRECRFKILIAVIAIVLIGLIALIIW 273
L+ ARR +AETE+V + ITSELSRNR T+ESA +V V T+ AR IL++M RR+ + ++ + V++ L+ I +I++
Sbjct: 144 LDHARRVMAETEDVALEITSELSRNRETIESAHGRVRNVSGLTNRARRILQNMSRRQVQQRLAVYVVSAFLVIFILVILF 223
BLAST of mRNA_M-pyrifera_M_contig118204.3772.1 vs. uniprot
Match: UPI00053C6E15 (vesicle transport v-SNARE 12 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C6E15) HSP 1 Score: 57.8 bits (138), Expect = 7.140e-8 Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 1
Query: 10 RMERGTTVLEEARRTLAETEEVGVSITSELSRNRTTLESARVKVHGVHEETDLARSILRSMDRRECRFKILIAVIAIVLIGLIALII 270
R+++ + + E+RRT+ ETEE+GVSI +L + R TL A K+HGV + D ++ IL SM RR R K +IA + LI I LII
Sbjct: 130 RLDQSSNRITESRRTMLETEELGVSILEDLHQQRQTLLHAHSKLHGVDDAIDKSKKILTSMSRRMTRNKWIIASVITALILTIVLII 216
BLAST of mRNA_M-pyrifera_M_contig118204.3772.1 vs. uniprot
Match: A0A7S3QG21_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QG21_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 7.630e-8 Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 1
Query: 43 ARRTLAETEEVGVSITSELSRNRTTLESARVKVHGVHEETDLARSILRSMDRRECRFKILI 225
ARR +AETE+V + IT ELSRNR T+ESA +V GV T+ AR +L SM RRE + K+++
Sbjct: 155 ARRIMAETEDVALEITDELSRNRETIESAHSRVRGVSSLTNRARRVLVSMQRREVQQKMVL 215
BLAST of mRNA_M-pyrifera_M_contig118204.3772.1 vs. uniprot
Match: A0A7S1C7L7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C7L7_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 7.910e-8 Identity = 38/90 (42.22%), Postives = 53/90 (58.89%), Query Frame = 1
Query: 1 SSGRMERGTTVLEEARRTLAETEEVGVSITSELSRNRTTLESARVKVHGVHEETDLARSILRSMDRRECRFKILIAVIAIVLIGLIALII 270
++ RM+R T VLEE RRT+ ETEEVGV I L R TL A KV + T AR +L ++ RR C + L+ V+ + L+G I ++
Sbjct: 131 ATARMDRSTAVLEETRRTVMETEEVGVGIMGNLHSQRETLLRAHDKVKETNRLTTRARRVLNNIKRRACYNQALLWVVILFLLGAIGAVV 220
BLAST of mRNA_M-pyrifera_M_contig118204.3772.1 vs. uniprot
Match: M4FJ28_BRARP (V-SNARE domain-containing protein n=10 Tax=Brassicaceae TaxID=3700 RepID=M4FJ28_BRARP) HSP 1 Score: 57.4 bits (137), Expect = 1.240e-7 Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 1
Query: 10 RMERGTTVLEEARRTLAETEEVGVSITSELSRNRTTLESARVKVHGVHEETDLARSILRSMDRRECRFKILIAVIAIVLIGLIALII 270
R+++ + + E+RRT+ ETEE+GVSI +LS+ R TL + K+HGV E D ++ +L +M RR R K ++ + I LI I LII
Sbjct: 158 RLDQSSDRIRESRRTMMETEELGVSILQDLSQQRQTLLHSHSKLHGVDEAIDKSKKVLTAMSRRITRNKWIVTSVIIALILAIILII 244
BLAST of mRNA_M-pyrifera_M_contig118204.3772.1 vs. uniprot
Match: A0A1J3IME6_NOCCA (Vesicle transport v-SNARE 12 n=4 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3IME6_NOCCA) HSP 1 Score: 57.0 bits (136), Expect = 1.370e-7 Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 1
Query: 1 SSGRMERGTTVLEEARRTLAETEEVGVSITSELSRNRTTLESARVKVHGVHEETDLARSILRSMDRRECRFKILIAVIAIVLIGLIALII 270
S R+++ + + E+RRT+ ETEE+GVSI +L + R TL A K+HGV + D ++ +L +M RR R K ++ + + LI I LII
Sbjct: 127 SMERLDQSSDRIRESRRTMLETEELGVSILQDLGQQRQTLLHAHTKLHGVDDAIDKSKKVLTAMSRRMTRNKWIVTSVIVALILAIILII 216
BLAST of mRNA_M-pyrifera_M_contig118204.3772.1 vs. uniprot
Match: A0A6S8XXA7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8XXA7_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 4.990e-7 Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 1
Query: 34 LEEARRTLAETEEVGVSITSELSRNRTTLESARVKVHGVHEETDLARSILRSMDRRECRFK-ILIAVIAIVLIGLIALI 267
LE ARR +A+TEE + IT+EL RNR T++SA +V V T+ AR I+++M RRE + K +L V+A++ I L+ +I
Sbjct: 139 LERARRIMADTEETAMEITTELGRNRETIQSAHGRVREVSGLTNRARRIVQNMSRREVQQKLVLYMVLAVIFIVLVIII 217
BLAST of mRNA_M-pyrifera_M_contig118204.3772.1 vs. uniprot
Match: A0A2R6RFF9_ACTCC (Vesicle transport v-SNARE like n=3 Tax=Actinidia TaxID=3624 RepID=A0A2R6RFF9_ACTCC) HSP 1 Score: 55.5 bits (132), Expect = 5.080e-7 Identity = 33/91 (36.26%), Postives = 58/91 (63.74%), Query Frame = 1
Query: 1 SSGRMERGTTVLEEARRTLAETEEVGVSITSELSRNRTTLESARVKVHGVHEETDLARSILRSMDRRECRFKILIAVIAIVLIGLIALIIW 273
S+ R+ + + ++E+RRT+ ETE++GVSI +L + R TL + K+HGV + D ++ +L SM RR R K+++ I L+ I L+++
Sbjct: 127 STERLNQSSDRIKESRRTMLETEDLGVSILQDLHQQRETLLHSHKKLHGVDDAIDKSKKVLTSMSRRMSRNKLIVGSIIAALVLAIVLVLY 217
BLAST of mRNA_M-pyrifera_M_contig118204.3772.1 vs. uniprot
Match: UPI000B8C72E2 (vesicle transport v-SNARE 12 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8C72E2) HSP 1 Score: 55.1 bits (131), Expect = 5.340e-7 Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 1
Query: 34 LEEARRTLAETEEVGVSITSELSRNRTTLESARVKVHGVHEETDLARSILRSMDRRECRFKILIAVIAIVLIGLIALIIWVATK 285
++E+RRT+ ETEE+GVSI +L + R TL A K+HGV + D ++ IL +M RR R K ++A + L+ I LI++ K
Sbjct: 112 IKESRRTMLETEELGVSILEDLHQQRQTLLHAHNKLHGVDDAIDKSKKILSTMSRRITRNKWIVASVIAALVFAIILILFFKLK 195 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118204.3772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig118204.3772.1 >prot_M-pyrifera_M_contig118204.3772.1 ID=prot_M-pyrifera_M_contig118204.3772.1|Name=mRNA_M-pyrifera_M_contig118204.3772.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp MERGTTVLEEARRTLAETEEVGVSITSELSRNRTTLESARVKVHGVHEETback to top mRNA from alignment at M-pyrifera_M_contig118204:3..302+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig118204.3772.1 ID=mRNA_M-pyrifera_M_contig118204.3772.1|Name=mRNA_M-pyrifera_M_contig118204.3772.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig118204:3..302+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig118204:3..302+ >mRNA_M-pyrifera_M_contig118204.3772.1 ID=mRNA_M-pyrifera_M_contig118204.3772.1|Name=mRNA_M-pyrifera_M_contig118204.3772.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig118204:3..302+ (Macrocystis pyrifera P11B4 male)back to top |