mRNA_M-pyrifera_M_contig118204.3772.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig118204.3772.1
Unique NamemRNA_M-pyrifera_M_contig118204.3772.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig118204.3772.1 vs. uniprot
Match: A0A565AYX4_9BRAS (V-SNARE domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565AYX4_9BRAS)

HSP 1 Score: 60.5 bits (145), Expect = 7.000e-9
Identity = 36/87 (41.38%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   10 RMERGTTVLEEARRTLAETEEVGVSITSELSRNRTTLESARVKVHGVHEETDLARSILRSMDRRECRFKILIAVIAIVLIGLIALII 270
            R++R +  + E+RRT+ ETEE+GV+I  +LS+ R TL  A  K+HGV +  D ++ +L +M RR  R K ++  + + LI  I LII
Sbjct:  130 RLDRSSDRIRESRRTMLETEEIGVAIVQDLSQQRQTLLHAHTKLHGVDDAIDKSKKVLTAMSRRMTRNKWIVTAVIVALILAIILII 216          
BLAST of mRNA_M-pyrifera_M_contig118204.3772.1 vs. uniprot
Match: A0A7S2UKP9_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKP9_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.970e-8
Identity = 36/80 (45.00%), Postives = 56/80 (70.00%), Query Frame = 1
Query:   34 LEEARRTLAETEEVGVSITSELSRNRTTLESARVKVHGVHEETDLARSILRSMDRRECRFKILIAVIAIVLIGLIALIIW 273
            L+ ARR +AETE+V + ITSELSRNR T+ESA  +V  V   T+ AR IL++M RR+ + ++ + V++  L+  I +I++
Sbjct:  144 LDHARRVMAETEDVALEITSELSRNRETIESAHGRVRNVSGLTNRARRILQNMSRRQVQQRLAVYVVSAFLVIFILVILF 223          
BLAST of mRNA_M-pyrifera_M_contig118204.3772.1 vs. uniprot
Match: UPI00053C6E15 (vesicle transport v-SNARE 12 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C6E15)

HSP 1 Score: 57.8 bits (138), Expect = 7.140e-8
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 1
Query:   10 RMERGTTVLEEARRTLAETEEVGVSITSELSRNRTTLESARVKVHGVHEETDLARSILRSMDRRECRFKILIAVIAIVLIGLIALII 270
            R+++ +  + E+RRT+ ETEE+GVSI  +L + R TL  A  K+HGV +  D ++ IL SM RR  R K +IA +   LI  I LII
Sbjct:  130 RLDQSSNRITESRRTMLETEELGVSILEDLHQQRQTLLHAHSKLHGVDDAIDKSKKILTSMSRRMTRNKWIIASVITALILTIVLII 216          
BLAST of mRNA_M-pyrifera_M_contig118204.3772.1 vs. uniprot
Match: A0A7S3QG21_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QG21_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 7.630e-8
Identity = 33/61 (54.10%), Postives = 44/61 (72.13%), Query Frame = 1
Query:   43 ARRTLAETEEVGVSITSELSRNRTTLESARVKVHGVHEETDLARSILRSMDRRECRFKILI 225
            ARR +AETE+V + IT ELSRNR T+ESA  +V GV   T+ AR +L SM RRE + K+++
Sbjct:  155 ARRIMAETEDVALEITDELSRNRETIESAHSRVRGVSSLTNRARRVLVSMQRREVQQKMVL 215          
BLAST of mRNA_M-pyrifera_M_contig118204.3772.1 vs. uniprot
Match: A0A7S1C7L7_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C7L7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 7.910e-8
Identity = 38/90 (42.22%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    1 SSGRMERGTTVLEEARRTLAETEEVGVSITSELSRNRTTLESARVKVHGVHEETDLARSILRSMDRRECRFKILIAVIAIVLIGLIALII 270
            ++ RM+R T VLEE RRT+ ETEEVGV I   L   R TL  A  KV   +  T  AR +L ++ RR C  + L+ V+ + L+G I  ++
Sbjct:  131 ATARMDRSTAVLEETRRTVMETEEVGVGIMGNLHSQRETLLRAHDKVKETNRLTTRARRVLNNIKRRACYNQALLWVVILFLLGAIGAVV 220          
BLAST of mRNA_M-pyrifera_M_contig118204.3772.1 vs. uniprot
Match: M4FJ28_BRARP (V-SNARE domain-containing protein n=10 Tax=Brassicaceae TaxID=3700 RepID=M4FJ28_BRARP)

HSP 1 Score: 57.4 bits (137), Expect = 1.240e-7
Identity = 37/87 (42.53%), Postives = 56/87 (64.37%), Query Frame = 1
Query:   10 RMERGTTVLEEARRTLAETEEVGVSITSELSRNRTTLESARVKVHGVHEETDLARSILRSMDRRECRFKILIAVIAIVLIGLIALII 270
            R+++ +  + E+RRT+ ETEE+GVSI  +LS+ R TL  +  K+HGV E  D ++ +L +M RR  R K ++  + I LI  I LII
Sbjct:  158 RLDQSSDRIRESRRTMMETEELGVSILQDLSQQRQTLLHSHSKLHGVDEAIDKSKKVLTAMSRRITRNKWIVTSVIIALILAIILII 244          
BLAST of mRNA_M-pyrifera_M_contig118204.3772.1 vs. uniprot
Match: A0A1J3IME6_NOCCA (Vesicle transport v-SNARE 12 n=4 Tax=Noccaea caerulescens TaxID=107243 RepID=A0A1J3IME6_NOCCA)

HSP 1 Score: 57.0 bits (136), Expect = 1.370e-7
Identity = 36/90 (40.00%), Postives = 56/90 (62.22%), Query Frame = 1
Query:    1 SSGRMERGTTVLEEARRTLAETEEVGVSITSELSRNRTTLESARVKVHGVHEETDLARSILRSMDRRECRFKILIAVIAIVLIGLIALII 270
            S  R+++ +  + E+RRT+ ETEE+GVSI  +L + R TL  A  K+HGV +  D ++ +L +M RR  R K ++  + + LI  I LII
Sbjct:  127 SMERLDQSSDRIRESRRTMLETEELGVSILQDLGQQRQTLLHAHTKLHGVDDAIDKSKKVLTAMSRRMTRNKWIVTSVIVALILAIILII 216          
BLAST of mRNA_M-pyrifera_M_contig118204.3772.1 vs. uniprot
Match: A0A6S8XXA7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6S8XXA7_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.990e-7
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 1
Query:   34 LEEARRTLAETEEVGVSITSELSRNRTTLESARVKVHGVHEETDLARSILRSMDRRECRFK-ILIAVIAIVLIGLIALI 267
            LE ARR +A+TEE  + IT+EL RNR T++SA  +V  V   T+ AR I+++M RRE + K +L  V+A++ I L+ +I
Sbjct:  139 LERARRIMADTEETAMEITTELGRNRETIQSAHGRVREVSGLTNRARRIVQNMSRREVQQKLVLYMVLAVIFIVLVIII 217          
BLAST of mRNA_M-pyrifera_M_contig118204.3772.1 vs. uniprot
Match: A0A2R6RFF9_ACTCC (Vesicle transport v-SNARE like n=3 Tax=Actinidia TaxID=3624 RepID=A0A2R6RFF9_ACTCC)

HSP 1 Score: 55.5 bits (132), Expect = 5.080e-7
Identity = 33/91 (36.26%), Postives = 58/91 (63.74%), Query Frame = 1
Query:    1 SSGRMERGTTVLEEARRTLAETEEVGVSITSELSRNRTTLESARVKVHGVHEETDLARSILRSMDRRECRFKILIAVIAIVLIGLIALIIW 273
            S+ R+ + +  ++E+RRT+ ETE++GVSI  +L + R TL  +  K+HGV +  D ++ +L SM RR  R K+++  I   L+  I L+++
Sbjct:  127 STERLNQSSDRIKESRRTMLETEDLGVSILQDLHQQRETLLHSHKKLHGVDDAIDKSKKVLTSMSRRMSRNKLIVGSIIAALVLAIVLVLY 217          
BLAST of mRNA_M-pyrifera_M_contig118204.3772.1 vs. uniprot
Match: UPI000B8C72E2 (vesicle transport v-SNARE 12 n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8C72E2)

HSP 1 Score: 55.1 bits (131), Expect = 5.340e-7
Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 1
Query:   34 LEEARRTLAETEEVGVSITSELSRNRTTLESARVKVHGVHEETDLARSILRSMDRRECRFKILIAVIAIVLIGLIALIIWVATK 285
            ++E+RRT+ ETEE+GVSI  +L + R TL  A  K+HGV +  D ++ IL +M RR  R K ++A +   L+  I LI++   K
Sbjct:  112 IKESRRTMLETEELGVSILEDLHQQRQTLLHAHNKLHGVDDAIDKSKKILSTMSRRITRNKWIVASVIAALVFAIILILFFKLK 195          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig118204.3772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A565AYX4_9BRAS7.000e-941.38V-SNARE domain-containing protein n=1 Tax=Arabis n... [more]
A0A7S2UKP9_9STRA1.970e-845.00Hypothetical protein n=1 Tax=Attheya septentrional... [more]
UPI00053C6E157.140e-844.83vesicle transport v-SNARE 12 n=1 Tax=Tarenaya hass... [more]
A0A7S3QG21_9STRA7.630e-854.10Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A7S1C7L7_9STRA7.910e-842.22Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
M4FJ28_BRARP1.240e-742.53V-SNARE domain-containing protein n=10 Tax=Brassic... [more]
A0A1J3IME6_NOCCA1.370e-740.00Vesicle transport v-SNARE 12 n=4 Tax=Noccaea caeru... [more]
A0A6S8XXA7_9STRA4.990e-745.57Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A2R6RFF9_ACTCC5.080e-736.26Vesicle transport v-SNARE like n=3 Tax=Actinidia T... [more]
UPI000B8C72E25.340e-741.67vesicle transport v-SNARE 12 n=1 Tax=Carica papaya... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig118204contigM-pyrifera_M_contig118204:3..302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.1
Seed ortholog evalue6.6e-07
Seed eggNOG ortholog28532.XP_010552566.1
KEGG koko:K08493
KEGG Pathwayko04130,ko04138,map04130,map04138
Hectar predicted targeting categorysignal anchor
GOsGO:0003674,GO:0005483,GO:0005484,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005783,GO:0005789,GO:0005794,GO:0005798,GO:0005802,GO:0005886,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006888,GO:0006892,GO:0006896,GO:0006906,GO:0006996,GO:0007034,GO:0008104,GO:0008150,GO:0009987,GO:0010008,GO:0012505,GO:0012506,GO:0012507,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016482,GO:0030133,GO:0030134,GO:0030135,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0031090,GO:0031201,GO:0031410,GO:0031902,GO:0031982,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0042147,GO:0042175,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044432,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048193,GO:0048280,GO:0048284,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0061024,GO:0061025,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072665,GO:0072666,GO:0090174,GO:0097708,GO:0098588,GO:0098791,GO:0098796,GO:0098805,GO:0098827
EggNOG free text desc.Vesicle transport v-SNARE protein N-terminus
EggNOG OGs37SK6@33090,3GBYJ@35493,3HX3M@3699,KOG1666@1,KOG1666@2759
COG Functional cat.U
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons1
Model size300
Cds size288
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.7484763-UTR-M-pyrifera_M_contig118204:2..141622815701.7484763-UTR-M-pyrifera_M_contig118204:2..14Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118204 3..14 +
1692277529.0445237-UTR-M-pyrifera_M_contig118204:2..141692277529.0445237-UTR-M-pyrifera_M_contig118204:2..14Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig118204 3..14 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.7602432-CDS-M-pyrifera_M_contig118204:14..3021622815701.7602432-CDS-M-pyrifera_M_contig118204:14..302Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118204 15..302 +
1692277529.0611362-CDS-M-pyrifera_M_contig118204:14..3021692277529.0611362-CDS-M-pyrifera_M_contig118204:14..302Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig118204 15..302 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig118204.3772.1prot_M-pyrifera_M_contig118204.3772.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig118204 15..302 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig118204.3772.1

>prot_M-pyrifera_M_contig118204.3772.1 ID=prot_M-pyrifera_M_contig118204.3772.1|Name=mRNA_M-pyrifera_M_contig118204.3772.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=96bp
MERGTTVLEEARRTLAETEEVGVSITSELSRNRTTLESARVKVHGVHEET
DLARSILRSMDRRECRFKILIAVIAIVLIGLIALIIWVATKDKKK*
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mRNA from alignment at M-pyrifera_M_contig118204:3..302+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig118204.3772.1 ID=mRNA_M-pyrifera_M_contig118204.3772.1|Name=mRNA_M-pyrifera_M_contig118204.3772.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=300bp|location=Sequence derived from alignment at M-pyrifera_M_contig118204:3..302+ (Macrocystis pyrifera P11B4 male)
AGCAGCGGGAGAATGGAGAGGGGCACCACGGTGCTGGAGGAAGCCAGGCG GACGCTAGCCGAGACGGAGGAGGTCGGGGTCAGTATCACCTCGGAACTCT CCAGAAACAGAACCACCCTCGAGAGCGCCCGCGTCAAGGTACACGGCGTC CACGAGGAAACCGACCTCGCGAGGTCCATCCTGCGCTCCATGGACAGGAG GGAGTGCAGGTTCAAAATCCTCATCGCCGTCATCGCTATCGTCCTCATCG GACTCATCGCACTCATCATCTGGGTCGCCACCAAAGACAAGAAAAAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig118204:3..302+

>mRNA_M-pyrifera_M_contig118204.3772.1 ID=mRNA_M-pyrifera_M_contig118204.3772.1|Name=mRNA_M-pyrifera_M_contig118204.3772.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=576bp|location=Sequence derived from alignment at M-pyrifera_M_contig118204:3..302+ (Macrocystis pyrifera P11B4 male)
ATGGAGAGGGGCACCACGGTGCTGGAGGAAGCCAGGCGGACGCTAGCCGA
GACGGAGGAGGTCGGGGTCAGTATCACCTCGGAACTCTCCAGAAACAGAA
CCACCCTCGAGAGCGCCCGCGTCAAGGTACACGGCGTCCACGAGGAAACC
GACCTCGCGAGGTCCATCCTGCGCTCCATGGACAGGAGGGAGTGCAGGTT
CAAAATCCTCATCGCCGTCATCGCTATCGTCCTCATCGGACTCATCGCAC
TCATCATCTGGGTCGCCACCAAAGACAAGAAAAAGTAAATGGAGAGGGGC
ACCACGGTGCTGGAGGAAGCCAGGCGGACGCTAGCCGAGACGGAGGAGGT
CGGGGTCAGTATCACCTCGGAACTCTCCAGAAACAGAACCACCCTCGAGA
GCGCCCGCGTCAAGGTACACGGCGTCCACGAGGAAACCGACCTCGCGAGG
TCCATCCTGCGCTCCATGGACAGGAGGGAGTGCAGGTTCAAAATCCTCAT
CGCCGTCATCGCTATCGTCCTCATCGGACTCATCGCACTCATCATCTGGG
TCGCCACCAAAGACAAGAAAAAGTAA
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