mRNA_M-pyrifera_M_contig117778.3668.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig117778.3668.1 vs. uniprot
Match: A0A1Q4DQZ7_9HYPH (CHRD domain-containing protein n=1 Tax=Rhizobiales bacterium 64-17 TaxID=1895814 RepID=A0A1Q4DQZ7_9HYPH) HSP 1 Score: 52.8 bits (125), Expect = 2.160e-6 Identity = 39/112 (34.82%), Postives = 49/112 (43.75%), Query Frame = 1
Query: 1 GGGIVFAALDTETGEFSWEFTYAGLSGAPGAAHFHEAPAGVAGGVTVPXXXXXXXSGAGSGSVMLAGGGLADAISALTGDGGFGPGAITD-----WYLNIHTPANGAGELRG 321
G G V A DT + + SW+ +Y LSG AAHFH AG G V VP ++ A S L G +D Y+N+HT AN AGE+RG
Sbjct: 44 GSGAVTATYDTASKKLSWKGSYKDLSGPATAAHFHIGEAGKNGAVAVP---------------------ISPATSPLEGSATLTDAQASDLLAGRMYVNVHTAANKAGEIRG 134
BLAST of mRNA_M-pyrifera_M_contig117778.3668.1 vs. uniprot
Match: A0A4R3KW73_9SPHI (CHRD domain-containing protein n=1 Tax=Anseongella ginsenosidimutans TaxID=496056 RepID=A0A4R3KW73_9SPHI) HSP 1 Score: 53.1 bits (126), Expect = 2.320e-6 Identity = 42/112 (37.50%), Postives = 55/112 (49.11%), Query Frame = 1
Query: 1 GGGIVFAALDTETGEFSWEFTYAGLSGAPGAAHFHE-----APAGVAGGVTVPXXXXXXXSGAGSGSVMLAGGGLADAISALTGDGGFGPGAITDWYLNIHTPANGAGELRG 321
G G LDT TGEF+++ ++GL+G P HFH A AGV G+T +G+ S +V + AD L G WY+NIHT A GAGE+RG
Sbjct: 56 GAGSFEGTLDTATGEFTFKLEWSGLTGPPSMMHFHGPADPGADAGVKIGIT---DFPAEAAGSVSQTVTVE---EADRADLLAGK----------WYVNIHTDAYGAGEIRG 151
BLAST of mRNA_M-pyrifera_M_contig117778.3668.1 vs. uniprot
Match: A0A6L9KYB4_9PROT (CHRD domain-containing protein n=1 Tax=Ferrovum sp. TaxID=2609467 RepID=A0A6L9KYB4_9PROT) HSP 1 Score: 52.0 bits (123), Expect = 4.490e-6 Identity = 41/108 (37.96%), Postives = 49/108 (45.37%), Query Frame = 1
Query: 1 GGGIVFAALDTETGEFSWEFTYAGLSGAPGAAHFH-EAPAGVAGGVTVPXXXXXXXSGAGSGSVMLAGGGLADAISALTGDGGFGPGAITDWYLNIHTPANGAGELRG 321
G GIV A LDT T S+ TYAGLSG AAHFH A A GV + G ++ A + + G WY+NIHT N AGE+RG
Sbjct: 45 GNGIVDATLDTATSRLSYTITYAGLSGPATAAHFHGPASATETAGVAIKINGPLASPIRGEATLTHE-----QAEALMKGQ----------WYVNIHTANNPAGEIRG 137
BLAST of mRNA_M-pyrifera_M_contig117778.3668.1 vs. uniprot
Match: UPI001C0138CE (CHRD domain-containing protein n=3 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001C0138CE) HSP 1 Score: 51.6 bits (122), Expect = 6.290e-6 Identity = 40/108 (37.04%), Postives = 50/108 (46.30%), Query Frame = 1
Query: 1 GGGIVFAALDTETGEFSWEFTYAGLSGAPGAAHFH-EAPAGVAGGVTVPXXXXXXXSGAGSGSVMLAGGGLADAISALTGDGGFGPGAITDWYLNIHTPANGAGELRG 321
G G D T + SW+ TY+GLSG AAHFH A AG GGV + GS ++ A A + G +Y+NIHT AN AGE+RG
Sbjct: 45 GKGTADIDYDAATKKLSWKLTYSGLSGPATAAHFHGPAAAGANGGVALAIPNAAKSPVEGSATLTDA-----QAADLMAGK----------YYINIHTAANPAGEIRG 137
BLAST of mRNA_M-pyrifera_M_contig117778.3668.1 vs. uniprot
Match: A0A345ZT04_9HYPH (CHRD domain-containing protein n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A345ZT04_9HYPH) HSP 1 Score: 51.2 bits (121), Expect = 9.280e-6 Identity = 38/109 (34.86%), Postives = 54/109 (49.54%), Query Frame = 1
Query: 7 GIVFAALDTETGEFSWEFTYAGLSGAPGAAHFHEAPAGVAGGVTVPXXXXXXXSGAGS----GSVMLAGGGLADAISALTGDGGFGPGAITDWYLNIHTPANGAGELRG 321
G + AA DT T + +W+ +Y+ L+G AAHFH G GG+ VP +GAGS GS L +D ++ Y+N+HT A+ AGE+RG
Sbjct: 51 GSLTAAYDTATKKLTWKGSYSNLTGPAVAAHFHAGEPGKNGGIQVPI------TGAGSSPFEGSATLTDAQASDLLAGRL-------------YVNVHTAAHTAGEIRG 140
BLAST of mRNA_M-pyrifera_M_contig117778.3668.1 vs. uniprot
Match: A0A7J4F6Y0_9ARCH (CHRD domain-containing protein n=1 Tax=Candidatus Micrarchaeota archaeon TaxID=2250274 RepID=A0A7J4F6Y0_9ARCH) HSP 1 Score: 50.4 bits (119), Expect = 3.030e-5 Identity = 37/111 (33.33%), Postives = 46/111 (41.44%), Query Frame = 1
Query: 25 LDTETGEFSWEFTYAGLSGAPGAAHFHEAPAGVAGGVTVPXXXXXXXSGAGSGSVMLAGGGLADAISALTGDGGFGPGAIT------------DWYLNIHTPANGAGELRG 321
L+ ETG F+W ++ GL+G AAHFH AG P G S L+ D G G T +WY+NIHT ANG GE+RG
Sbjct: 54 LNDETGMFAWIISFQGLTGPATAAHFH---AGAVDDTGPPVLNLDTDPGV--------------TFSGLSADAGIFAGTTTLSADAVMAVLSGNWYVNIHTEANGGGEIRG 147
BLAST of mRNA_M-pyrifera_M_contig117778.3668.1 vs. uniprot
Match: UPI001BAA61ED (CHRD domain-containing protein n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BAA61ED) HSP 1 Score: 48.9 bits (115), Expect = 7.110e-5 Identity = 36/106 (33.96%), Postives = 47/106 (44.34%), Query Frame = 1
Query: 7 GIVFAALDTETGEFSWEFTYAGLSGAPGAAHFH-EAPAGVAGGVTVPXXXXXXXSGAGSGSVMLAGGGLADAISALTGDGGFGPGAITDWYLNIHTPANGAGELRG 321
G+ DT + SW+ +Y GLSG AHFH A G GV VP S G+ L AD ++ +Y+N+HT AN AGE+RG
Sbjct: 52 GLADVTFDTASKALSWKLSYTGLSGPATMAHFHGPAEPGKNAGVAVPIPNTASGS---EGTATLTDAQAADLMAGK-------------YYVNVHTAANPAGEIRG 141 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117778.3668.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig117778.3668.1 >prot_M-pyrifera_M_contig117778.3668.1 ID=prot_M-pyrifera_M_contig117778.3668.1|Name=mRNA_M-pyrifera_M_contig117778.3668.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp GGGIVFAALDTETGEFSWEFTYAGLSGAPGAAHFHEAPAGVAGGVTVPVTback to top mRNA from alignment at M-pyrifera_M_contig117778:231..551+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig117778.3668.1 ID=mRNA_M-pyrifera_M_contig117778.3668.1|Name=mRNA_M-pyrifera_M_contig117778.3668.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=321bp|location=Sequence derived from alignment at M-pyrifera_M_contig117778:231..551+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig117778:231..551+ >mRNA_M-pyrifera_M_contig117778.3668.1 ID=mRNA_M-pyrifera_M_contig117778.3668.1|Name=mRNA_M-pyrifera_M_contig117778.3668.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig117778:231..551+ (Macrocystis pyrifera P11B4 male)back to top |