mRNA_M-pyrifera_M_contig117566.3634.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig117566.3634.1
Unique NamemRNA_M-pyrifera_M_contig117566.3634.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig117566.3634.1 vs. uniprot
Match: D7G657_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G657_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 2.380e-9
Identity = 30/35 (85.71%), Postives = 32/35 (91.43%), Query Frame = 1 
Query:   10 ALLAYEERELPGLKEEKPGLKLRQYKQMIFEQVRR 114
            AL AYEERELP LKEEKPGLKLRQYKQMIFEQ ++
Sbjct:  208 ALAAYEERELPALKEEKPGLKLRQYKQMIFEQFQK 242
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig117566.3634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G657_ECTSI2.380e-985.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig117566contigM-pyrifera_M_contig117566:52..165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog2880.D7G657
Preferred nameCCDC124
KEGG koko:K02357
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003712,GO:0003713,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006979,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010467,GO:0010556,GO:0010557,GO:0010604,GO:0016020,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032774,GO:0033554,GO:0034599,GO:0034641,GO:0034645,GO:0034654,GO:0042221,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051716,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0060255,GO:0065007,GO:0065008,GO:0070887,GO:0071704,GO:0071944,GO:0080090,GO:0090304,GO:0097659,GO:0098771,GO:0140110,GO:1901360,GO:1901362,GO:1901576,GO:1902680,GO:1903506,GO:1903508,GO:2001141
EggNOG free text desc.cell division
EggNOG OGsKOG3223@1,KOG3223@2759
Ec32 ortholog descriptionProtein of unknown function DUF1014
Ec32 orthologEc-11_005260.1
COG Functional cat.CH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03012,ko03029
Exons1
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815693.5136015-CDS-M-pyrifera_M_contig117566:51..1651622815693.5136015-CDS-M-pyrifera_M_contig117566:51..165Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117566 52..165 +
1692277524.80287-CDS-M-pyrifera_M_contig117566:51..1651692277524.80287-CDS-M-pyrifera_M_contig117566:51..165Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig117566 52..165 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig117566.3634.1prot_M-pyrifera_M_contig117566.3634.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig117566 52..165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig117566.3634.1

>prot_M-pyrifera_M_contig117566.3634.1 ID=prot_M-pyrifera_M_contig117566.3634.1|Name=mRNA_M-pyrifera_M_contig117566.3634.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=38bp
FFQALLAYEERELPGLKEEKPGLKLRQYKQMIFEQVRR
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mRNA from alignment at M-pyrifera_M_contig117566:52..165+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig117566.3634.1 ID=mRNA_M-pyrifera_M_contig117566.3634.1|Name=mRNA_M-pyrifera_M_contig117566.3634.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=114bp|location=Sequence derived from alignment at M-pyrifera_M_contig117566:52..165+ (Macrocystis pyrifera P11B4 male)
TTTTTTCAGGCTCTTCTGGCGTACGAAGAGAGGGAATTGCCCGGGCTGAA
GGAGGAGAAGCCCGGGCTTAAGCTGAGGCAATACAAGCAGATGATTTTCG
AGCAGGTGAGGAGG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig117566:52..165+

>mRNA_M-pyrifera_M_contig117566.3634.1 ID=mRNA_M-pyrifera_M_contig117566.3634.1|Name=mRNA_M-pyrifera_M_contig117566.3634.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=228bp|location=Sequence derived from alignment at M-pyrifera_M_contig117566:52..165+ (Macrocystis pyrifera P11B4 male)
TTTTTTCAGGCTCTTCTGGCGTACGAAGAGAGGGAATTGCCCGGGCTGAA
GGAGGAGAAGCCCGGGCTTAAGCTGAGGCAATACAAGCAGATGATTTTCG
AGCAGGTGAGGAGGTTTTTTCAGGCTCTTCTGGCGTACGAAGAGAGGGAA
TTGCCCGGGCTGAAGGAGGAGAAGCCCGGGCTTAAGCTGAGGCAATACAA
GCAGATGATTTTCGAGCAGGTGAGGAGG
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