prot_M-pyrifera_M_contig11726.3567.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig11726.3567.1
Unique Nameprot_M-pyrifera_M_contig11726.3567.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length49
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig11726.3567.1 vs. uniprot
Match: A0A0U2S7L5_9EUGL (Cytochrome b n=2 Tax=unclassified Perkinsela TaxID=2639366 RepID=A0A0U2S7L5_9EUGL)

HSP 1 Score: 80.1 bits (196), Expect = 1.770e-16
Identity = 41/47 (87.23%), Postives = 43/47 (91.49%), Query Frame = 0 
Query:    2 IMYLINDNELGSLLRLAHSSMASIIYLLIFTHMFKVMLYGLVFESAH 48
            IMY INDNELGSLLRLAHS+MASIIY LIFTH+FK M YGLVFESAH
Sbjct:   65 IMYSINDNELGSLLRLAHSTMASIIYFLIFTHIFKAMFYGLVFESAH 111
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11726.3567.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0U2S7L5_9EUGL1.770e-1687.23Cytochrome b n=2 Tax=unclassified Perkinsela TaxID... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005797Cytochrome b/b6, N-terminalPFAMPF00033Cytochrome_Bcoord: 2..45
e-value: 6.1E-7
score: 29.4
IPR027387Cytochrome b/b6-like domain superfamilyGENE3D1.20.810.10coord: 1..46
e-value: 5.5E-6
score: 27.3
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..19
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 44..48
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 20..43
NoneNo IPR availableTMHMMTMhelixcoord: 13..35
IPR016174Di-haem cytochrome, transmembraneSUPERFAMILY81342Transmembrane di-heme cytochromescoord: 2..42

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11726contigM-pyrifera_M_contig11726:2867..3013 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11726.3567.1mRNA_M-pyrifera_M_contig11726.3567.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig11726 2750..3496 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig11726.3567.1 ID=prot_M-pyrifera_M_contig11726.3567.1|Name=mRNA_M-pyrifera_M_contig11726.3567.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=49bp
MIMYLINDNELGSLLRLAHSSMASIIYLLIFTHMFKVMLYGLVFESAH*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005797Cyt_b/b6_N
IPR027387Cytb/b6-like_sf
IPR016174Di-haem_cyt_TM