mRNA_M-pyrifera_M_contig116792.3478.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116792.3478.1
Unique NamemRNA_M-pyrifera_M_contig116792.3478.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116792.3478.1 vs. uniprot
Match: A0A2E4G426_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2E4G426_9BACT)

HSP 1 Score: 214 bits (544), Expect = 2.350e-68
Identity = 105/145 (72.41%), Postives = 127/145 (87.59%), Query Frame = 1
Query:    1 LTIKGVGIMTIATVIAETLGFEHVKNAKQLVSYAGYDVVERESGTSVKGKTRISKKGNRYIRNAMYFPAMVACRYNPDLKNTYLRIIQRKPSKMIGQVAIQRKLLILIYTLWKNDTVFIEDYQNKVAQAKSARATLDS-SIIELP 432
            L+IKGVG++T+AT+IAETLGF+ VKN KQL SYAGYDVV+RESGTS+KGKT+ISKKGNRYIRNA+YFPAMVACRYN  LKNTY+RII++KPSKM+GQ+AIQRKLLIL+YTLWK D +FIE+YQ K +   +  AT D  + I+LP
Sbjct:   55 LSIKGVGVLTVATIIAETLGFQFVKNVKQLASYAGYDVVQRESGTSIKGKTKISKKGNRYIRNALYFPAMVACRYNESLKNTYIRIIEKKPSKMVGQIAIQRKLLILLYTLWKKDEMFIENYQ-KNSSTDACEATRDRINQIDLP 198          
BLAST of mRNA_M-pyrifera_M_contig116792.3478.1 vs. uniprot
Match: UPI001E43EE3B (IS110 family transposase n=1 Tax=Pedobacter quisquiliarum TaxID=1834438 RepID=UPI001E43EE3B)

HSP 1 Score: 216 bits (551), Expect = 8.200e-68
Identity = 109/141 (77.30%), Postives = 123/141 (87.23%), Query Frame = 1
Query:    4 TIKGVGIMTIATVIAETLGFEHVKNAKQLVSYAGYDVVERESGTSVKGKTRISKKGNRYIRNAMYFPAMVACRYNPDLKNTYLRIIQRKPSKMIGQVAIQRKLLILIYTLWKNDTVFIEDYQNKVAQAKSARATLDSSIIE 426
            TIKGVG++TIAT++AET+GFE  K+AKQLVSYAGYDVV+RESGTS+KGKTRISKKGNRYIRNA+YFPAMVACR+NP LK  Y RI Q+KPSKMIGQVAIQRKLLILIYTLWKN+T FIE Y+      K A  TLDSSI+E
Sbjct:  178 TIKGVGLITIATILAETMGFEQFKSAKQLVSYAGYDVVQRESGTSIKGKTRISKKGNRYIRNALYFPAMVACRFNPTLKEIYTRINQQKPSKMIGQVAIQRKLLILIYTLWKNNTEFIEAYKESSPNPK-AETTLDSSIVE 317          
BLAST of mRNA_M-pyrifera_M_contig116792.3478.1 vs. uniprot
Match: A0A6G7BT96_9SPHI (IS110 family transposase n=5 Tax=Sphingobacterium TaxID=28453 RepID=A0A6G7BT96_9SPHI)

HSP 1 Score: 208 bits (530), Expect = 3.480e-64
Identity = 104/142 (73.24%), Postives = 122/142 (85.92%), Query Frame = 1
Query:    4 TIKGVGIMTIATVIAETLGFEHVKNAKQLVSYAGYDVVERESGTSVKGKTRISKKGNRYIRNAMYFPAMVACRYNPDLKNTYLRIIQRKPSKMIGQVAIQRKLLILIYTLWKNDTVFIEDYQNKVAQAKSARATLDSSIIEL 429
            TIKG+G++T+ T++AET+GFE   +AKQLVSYAGYDVV+RESGTSVKGKTRISKKGNRYIRNA+YFPAMVACR+N  LK  Y RIIQ+KPSKM+GQVA+QRKLLIL+YTLWKNDTVFIE+Y+      K+   TLDSS  EL
Sbjct:  213 TIKGIGMITMVTILAETMGFEQFGSAKQLVSYAGYDVVQRESGTSVKGKTRISKKGNRYIRNALYFPAMVACRHNSVLKEAYTRIIQKKPSKMVGQVAVQRKLLILMYTLWKNDTVFIENYKVSSPDPKT-ETTLDSSEAEL 353          
BLAST of mRNA_M-pyrifera_M_contig116792.3478.1 vs. uniprot
Match: UPI001F148663 (IS110 family transposase n=2 Tax=Flavobacterium sp. HJ-32-4 TaxID=1160795 RepID=UPI001F148663)

HSP 1 Score: 207 bits (528), Expect = 5.740e-64
Identity = 99/122 (81.15%), Postives = 114/122 (93.44%), Query Frame = 1
Query:    4 TIKGVGIMTIATVIAETLGFEHVKNAKQLVSYAGYDVVERESGTSVKGKTRISKKGNRYIRNAMYFPAMVACRYNPDLKNTYLRIIQRKPSKMIGQVAIQRKLLILIYTLWKNDTVFIEDYQ 369
            TIKGVG++TIAT+IAET GF  ++NA+QL S+AGYDVV+RESGTS+KGKTRISKKGNRYIRNA+YFPAMVACR+NPD+K TYLRI Q KPSKMIGQVAIQRKLL+L+YTLWKNDTVFIE Y+
Sbjct:  213 TIKGVGLITIATIIAETDGFYQIRNARQLASFAGYDVVQRESGTSIKGKTRISKKGNRYIRNALYFPAMVACRFNPDMKQTYLRINQNKPSKMIGQVAIQRKLLLLMYTLWKNDTVFIEGYK 334          
BLAST of mRNA_M-pyrifera_M_contig116792.3478.1 vs. uniprot
Match: A0A519U0A8_9SPHI (IS110 family transposase (Fragment) n=1 Tax=Pedobacter sp. TaxID=1411316 RepID=A0A519U0A8_9SPHI)

HSP 1 Score: 202 bits (513), Expect = 2.520e-63
Identity = 104/144 (72.22%), Postives = 121/144 (84.03%), Query Frame = 1
Query:    1 LTIKGVGIMTIATVIAETLGFEHVKNAKQLVSYAGYDVVERESGTSVKGKTRISKKGNRYIRNAMYFPAMVACRYNPDLKNTYLRIIQR-KPSKMIGQVAIQRKLLILIYTLWKNDTVFIEDYQNKVAQAKSARATLDSSIIEL 429
            LTIKGVG++T AT+IAET+GFE   ++KQLVSY+GYDVV+RESGTS+KGKTRISKKGNRYIRNA+YFPAMVACR+N  LK TY+RI +  K SKMIGQVAIQRKLL+LIYTLWKNDT FIE+YQ      K+   T DSS+ EL
Sbjct:   78 LTIKGVGLITAATIIAETMGFEQFHSSKQLVSYSGYDVVQRESGTSIKGKTRISKKGNRYIRNALYFPAMVACRHNETLKETYIRINRNNKASKMIGQVAIQRKLLVLIYTLWKNDTEFIENYQRGSLDPKT-ETTQDSSVAEL 220          
BLAST of mRNA_M-pyrifera_M_contig116792.3478.1 vs. uniprot
Match: A0A2X2J5N2_SPHMU (Transposase IS116/IS110/IS902 family n=4 Tax=Sphingobacteriaceae TaxID=84566 RepID=A0A2X2J5N2_SPHMU)

HSP 1 Score: 204 bits (519), Expect = 1.620e-62
Identity = 104/144 (72.22%), Postives = 122/144 (84.72%), Query Frame = 1
Query:    1 LTIKGVGIMTIATVIAETLGFEHVKNAKQLVSYAGYDVVERESGTSVKGKTRISKKGNRYIRNAMYFPAMVACRYNPDLKNTYLRIIQR-KPSKMIGQVAIQRKLLILIYTLWKNDTVFIEDYQNKVAQAKSARATLDSSIIEL 429
            LTIKGVG++T+AT++AET+GFE   ++KQLVSY+GYDVV+RESGTS+KGKTRISKKGNRYIRNA+YFPAMVACRYN  LK TY+RI +  K SKMIGQVAIQRKLL+LIYTLWKNDT FIE+YQ      K+   T DSS+ EL
Sbjct:  212 LTIKGVGLITVATILAETMGFEQFHSSKQLVSYSGYDVVQRESGTSIKGKTRISKKGNRYIRNALYFPAMVACRYNEALKETYIRINKNNKASKMIGQVAIQRKLLVLIYTLWKNDTEFIENYQRGSLDPKT-ETTQDSSVAEL 354          
BLAST of mRNA_M-pyrifera_M_contig116792.3478.1 vs. uniprot
Match: A0A1W2F9R1_9SPHI (Transposase n=1 Tax=Pedobacter nyackensis TaxID=475255 RepID=A0A1W2F9R1_9SPHI)

HSP 1 Score: 202 bits (514), Expect = 8.930e-62
Identity = 99/143 (69.23%), Postives = 121/143 (84.62%), Query Frame = 1
Query:    1 LTIKGVGIMTIATVIAETLGFEHVKNAKQLVSYAGYDVVERESGTSVKGKTRISKKGNRYIRNAMYFPAMVACRYNPDLKNTYLRIIQRKPSKMIGQVAIQRKLLILIYTLWKNDTVFIEDYQNKVAQAKSARATLDSSIIEL 429
            LTI+GVG++T+AT++AET+GF+   + KQLVSY+GYDVV+RESGTS+KGKTRISKKGNRYIRNA+YFPAMVACRYN  LK  Y+RI Q+K SKM+GQVAIQRKLLILIYTLWKNDT F+E+Y+   +       T DSS++EL
Sbjct:  212 LTIRGVGLITLATILAETMGFKQFGSVKQLVSYSGYDVVQRESGTSIKGKTRISKKGNRYIRNALYFPAMVACRYNESLKEIYMRINQKKSSKMVGQVAIQRKLLILIYTLWKNDTEFMENYKGS-SPDPIIETTQDSSVVEL 353          
BLAST of mRNA_M-pyrifera_M_contig116792.3478.1 vs. uniprot
Match: A0A2D9FXG6_9BACT (IS110 family transposase n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2D9FXG6_9BACT)

HSP 1 Score: 190 bits (483), Expect = 3.690e-57
Identity = 97/137 (70.80%), Postives = 113/137 (82.48%), Query Frame = 1
Query:    4 TIKGVGIMTIATVIAETLGFEHVKNAKQLVSYAGYDVVERESGTSVKGKTRISKKGNRYIRNAMYFPAMVACRYNPDLKNTYLRIIQRKPSKMIGQVAIQRKLLILIYTLWKNDTVFIEDYQNKVAQAKSARATLDS 414
            +IKGVG +T+A ++AET  FE + N +QL SYAGYDV ERESGTSVKGKTRISKKGNRYIRNA+YFPAMVACR+NPDLK  Y R+I+ KPSKMIGQVA+QRKLL+L+Y+L KN T + E Y NKVA    A ATLDS
Sbjct:  213 SIKGVGRLTVAVILAETRMFEGICNTRQLASYAGYDVTERESGTSVKGKTRISKKGNRYIRNALYFPAMVACRFNPDLKEFYGRVIRNKPSKMIGQVAVQRKLLLLMYSLHKNGTRYQEGY-NKVAPTPKAEATLDS 348          
BLAST of mRNA_M-pyrifera_M_contig116792.3478.1 vs. uniprot
Match: A0A3B8VJ58_9BACT (IS110 family transposase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3B8VJ58_9BACT)

HSP 1 Score: 187 bits (475), Expect = 5.880e-56
Identity = 93/137 (67.88%), Postives = 115/137 (83.94%), Query Frame = 1
Query:    4 TIKGVGIMTIATVIAETLGFEHVKNAKQLVSYAGYDVVERESGTSVKGKTRISKKGNRYIRNAMYFPAMVACRYNPDLKNTYLRIIQRKPSKMIGQVAIQRKLLILIYTLWKNDTVFIEDYQNKVAQAKSARATLDS 414
            +IKGVG +T+A ++AET  FE ++N +QLVSYAGYDVVERESGTS+KGK+RISKKGNR+IRNA+YFPAMVACR+NPDLK  Y RIIQ KPSKM+GQVA+QRKLL+L+Y+L+KN + +   Y NKVA    A AT D+
Sbjct:  213 SIKGVGRLTVAVILAETKMFEGIENVRQLVSYAGYDVVERESGTSIKGKSRISKKGNRFIRNALYFPAMVACRFNPDLKEFYHRIIQNKPSKMVGQVAVQRKLLVLMYSLYKNGSQYQVGY-NKVAPIPMAEATRDN 348          
BLAST of mRNA_M-pyrifera_M_contig116792.3478.1 vs. uniprot
Match: A0A7C2MI32_9FLAO (IS110 family transposase n=1 Tax=Salinimicrobium catena TaxID=390640 RepID=A0A7C2MI32_9FLAO)

HSP 1 Score: 170 bits (431), Expect = 3.430e-49
Identity = 85/126 (67.46%), Postives = 101/126 (80.16%), Query Frame = 1
Query:    1 LTIKGVGIMTIATVIAETLGFEHVKNAKQLVSYAGYDVVERESGTSVKGKTRISKKGNRYIRNAMYFPAMVACRYNPDLKNTYLRIIQRKPSKMIGQVAIQRKLLILIYTLWKNDTVFIEDYQNKV 378
            +T KG+GI TIA V+AET GFE V+N +QL SYAG+DVV RESGTSVKGKTRISKKGN  IR A+YFPA+VA ++N DL   Y RII+ KPSKM+G  A+QRKLLILIYTLWKND  + ++Y N V
Sbjct:  213 MTTKGLGITTIAVVVAETQGFEFVQNIRQLTSYAGFDVVRRESGTSVKGKTRISKKGNSRIRAALYFPALVAVQHNKDLSKAYYRIIEGKPSKMVGITALQRKLLILIYTLWKNDQEYQDNYLNTV 338          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116792.3478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E4G426_9BACT2.350e-6872.41Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
UPI001E43EE3B8.200e-6877.30IS110 family transposase n=1 Tax=Pedobacter quisqu... [more]
A0A6G7BT96_9SPHI3.480e-6473.24IS110 family transposase n=5 Tax=Sphingobacterium ... [more]
UPI001F1486635.740e-6481.15IS110 family transposase n=2 Tax=Flavobacterium sp... [more]
A0A519U0A8_9SPHI2.520e-6372.22IS110 family transposase (Fragment) n=1 Tax=Pedoba... [more]
A0A2X2J5N2_SPHMU1.620e-6272.22Transposase IS116/IS110/IS902 family n=4 Tax=Sphin... [more]
A0A1W2F9R1_9SPHI8.930e-6269.23Transposase n=1 Tax=Pedobacter nyackensis TaxID=47... [more]
A0A2D9FXG6_9BACT3.690e-5770.80IS110 family transposase n=1 Tax=Balneola sp. TaxI... [more]
A0A3B8VJ58_9BACT5.880e-5667.88IS110 family transposase n=1 Tax=Bacteroidetes bac... [more]
A0A7C2MI32_9FLAO3.430e-4967.46IS110 family transposase n=1 Tax=Salinimicrobium c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116792contigM-pyrifera_M_contig116792:124..558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score143.7
Seed ortholog evalue6.5e-32
Seed eggNOG ortholog143224.JQMD01000002_gene3479
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Transposase IS116/IS110/IS902 family
EggNOG OGs1IJ01@117743,4NHKG@976,COG3547@1,COG3547@2
COG Functional cat.L
Best tax levelFlavobacteriia
Best eggNOG OGNA|NA|NA
Exons1
Model size435
Cds size411
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815684.601765-CDS-M-pyrifera_M_contig116792:123..5341622815684.601765-CDS-M-pyrifera_M_contig116792:123..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116792 124..534 -
1692277520.722421-CDS-M-pyrifera_M_contig116792:123..5341692277520.722421-CDS-M-pyrifera_M_contig116792:123..534Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116792 124..534 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815684.61421-UTR-M-pyrifera_M_contig116792:534..5581622815684.61421-UTR-M-pyrifera_M_contig116792:534..558Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116792 535..558 -
1692277520.7322028-UTR-M-pyrifera_M_contig116792:534..5581692277520.7322028-UTR-M-pyrifera_M_contig116792:534..558Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig116792 535..558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116792.3478.1prot_M-pyrifera_M_contig116792.3478.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116792 124..534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116792.3478.1

>prot_M-pyrifera_M_contig116792.3478.1 ID=prot_M-pyrifera_M_contig116792.3478.1|Name=mRNA_M-pyrifera_M_contig116792.3478.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
MTIATVIAETLGFEHVKNAKQLVSYAGYDVVERESGTSVKGKTRISKKGN
RYIRNAMYFPAMVACRYNPDLKNTYLRIIQRKPSKMIGQVAIQRKLLILI
YTLWKNDTVFIEDYQNKVAQAKSARATLDSSIIELP*
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mRNA from alignment at M-pyrifera_M_contig116792:124..558-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116792.3478.1 ID=mRNA_M-pyrifera_M_contig116792.3478.1|Name=mRNA_M-pyrifera_M_contig116792.3478.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig116792:124..558- (Macrocystis pyrifera P11B4 male)
CTTACCATCAAAGGAGTGGGAATCATGACCATTGCTACAGTCATTGCTGA AACCCTGGGCTTCGAGCATGTGAAAAACGCAAAACAGTTGGTCAGCTATG CCGGGTATGATGTGGTTGAGCGAGAATCGGGCACTTCGGTAAAGGGCAAA ACACGCATCTCAAAAAAGGGAAACCGATACATCAGAAATGCCATGTACTT CCCAGCCATGGTAGCGTGTAGATATAACCCTGATCTGAAAAATACCTACT TAAGAATCATCCAGCGAAAGCCTTCCAAAATGATCGGCCAGGTGGCCATC CAACGAAAACTATTAATCCTGATTTACACCTTATGGAAAAACGATACAGT CTTCATCGAAGACTATCAAAACAAAGTAGCCCAAGCGAAATCAGCTCGGG CTACGCTGGATAGTTCAATCATCGAACTTCCGTAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116792:124..558-

>mRNA_M-pyrifera_M_contig116792.3478.1 ID=mRNA_M-pyrifera_M_contig116792.3478.1|Name=mRNA_M-pyrifera_M_contig116792.3478.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig116792:124..558- (Macrocystis pyrifera P11B4 male)
ATGACCATTGCTACAGTCATTGCTGAAACCCTGGGCTTCGAGCATGTGAA
AAACGCAAAACAGTTGGTCAGCTATGCCGGGTATGATGTGGTTGAGCGAG
AATCGGGCACTTCGGTAAAGGGCAAAACACGCATCTCAAAAAAGGGAAAC
CGATACATCAGAAATGCCATGTACTTCCCAGCCATGGTAGCGTGTAGATA
TAACCCTGATCTGAAAAATACCTACTTAAGAATCATCCAGCGAAAGCCTT
CCAAAATGATCGGCCAGGTGGCCATCCAACGAAAACTATTAATCCTGATT
TACACCTTATGGAAAAACGATACAGTCTTCATCGAAGACTATCAAAACAA
AGTAGCCCAAGCGAAATCAGCTCGGGCTACGCTGGATAGTTCAATCATCG
AACTTCCGTAGATGACCATTGCTACAGTCATTGCTGAAACCCTGGGCTTC
GAGCATGTGAAAAACGCAAAACAGTTGGTCAGCTATGCCGGGTATGATGT
GGTTGAGCGAGAATCGGGCACTTCGGTAAAGGGCAAAACACGCATCTCAA
AAAAGGGAAACCGATACATCAGAAATGCCATGTACTTCCCAGCCATGGTA
GCGTGTAGATATAACCCTGATCTGAAAAATACCTACTTAAGAATCATCCA
GCGAAAGCCTTCCAAAATGATCGGCCAGGTGGCCATCCAACGAAAACTAT
TAATCCTGATTTACACCTTATGGAAAAACGATACAGTCTTCATCGAAGAC
TATCAAAACAAAGTAGCCCAAGCGAAATCAGCTCGGGCTACGCTGGATAG
TTCAATCATCGAACTTCCGTAG
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