mRNA_M-pyrifera_M_contig116792.3478.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig116792.3478.1 vs. uniprot
Match: A0A2E4G426_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2E4G426_9BACT) HSP 1 Score: 214 bits (544), Expect = 2.350e-68 Identity = 105/145 (72.41%), Postives = 127/145 (87.59%), Query Frame = 1
Query: 1 LTIKGVGIMTIATVIAETLGFEHVKNAKQLVSYAGYDVVERESGTSVKGKTRISKKGNRYIRNAMYFPAMVACRYNPDLKNTYLRIIQRKPSKMIGQVAIQRKLLILIYTLWKNDTVFIEDYQNKVAQAKSARATLDS-SIIELP 432
L+IKGVG++T+AT+IAETLGF+ VKN KQL SYAGYDVV+RESGTS+KGKT+ISKKGNRYIRNA+YFPAMVACRYN LKNTY+RII++KPSKM+GQ+AIQRKLLIL+YTLWK D +FIE+YQ K + + AT D + I+LP
Sbjct: 55 LSIKGVGVLTVATIIAETLGFQFVKNVKQLASYAGYDVVQRESGTSIKGKTKISKKGNRYIRNALYFPAMVACRYNESLKNTYIRIIEKKPSKMVGQIAIQRKLLILLYTLWKKDEMFIENYQ-KNSSTDACEATRDRINQIDLP 198
BLAST of mRNA_M-pyrifera_M_contig116792.3478.1 vs. uniprot
Match: UPI001E43EE3B (IS110 family transposase n=1 Tax=Pedobacter quisquiliarum TaxID=1834438 RepID=UPI001E43EE3B) HSP 1 Score: 216 bits (551), Expect = 8.200e-68 Identity = 109/141 (77.30%), Postives = 123/141 (87.23%), Query Frame = 1
Query: 4 TIKGVGIMTIATVIAETLGFEHVKNAKQLVSYAGYDVVERESGTSVKGKTRISKKGNRYIRNAMYFPAMVACRYNPDLKNTYLRIIQRKPSKMIGQVAIQRKLLILIYTLWKNDTVFIEDYQNKVAQAKSARATLDSSIIE 426
TIKGVG++TIAT++AET+GFE K+AKQLVSYAGYDVV+RESGTS+KGKTRISKKGNRYIRNA+YFPAMVACR+NP LK Y RI Q+KPSKMIGQVAIQRKLLILIYTLWKN+T FIE Y+ K A TLDSSI+E
Sbjct: 178 TIKGVGLITIATILAETMGFEQFKSAKQLVSYAGYDVVQRESGTSIKGKTRISKKGNRYIRNALYFPAMVACRFNPTLKEIYTRINQQKPSKMIGQVAIQRKLLILIYTLWKNNTEFIEAYKESSPNPK-AETTLDSSIVE 317
BLAST of mRNA_M-pyrifera_M_contig116792.3478.1 vs. uniprot
Match: A0A6G7BT96_9SPHI (IS110 family transposase n=5 Tax=Sphingobacterium TaxID=28453 RepID=A0A6G7BT96_9SPHI) HSP 1 Score: 208 bits (530), Expect = 3.480e-64 Identity = 104/142 (73.24%), Postives = 122/142 (85.92%), Query Frame = 1
Query: 4 TIKGVGIMTIATVIAETLGFEHVKNAKQLVSYAGYDVVERESGTSVKGKTRISKKGNRYIRNAMYFPAMVACRYNPDLKNTYLRIIQRKPSKMIGQVAIQRKLLILIYTLWKNDTVFIEDYQNKVAQAKSARATLDSSIIEL 429
TIKG+G++T+ T++AET+GFE +AKQLVSYAGYDVV+RESGTSVKGKTRISKKGNRYIRNA+YFPAMVACR+N LK Y RIIQ+KPSKM+GQVA+QRKLLIL+YTLWKNDTVFIE+Y+ K+ TLDSS EL
Sbjct: 213 TIKGIGMITMVTILAETMGFEQFGSAKQLVSYAGYDVVQRESGTSVKGKTRISKKGNRYIRNALYFPAMVACRHNSVLKEAYTRIIQKKPSKMVGQVAVQRKLLILMYTLWKNDTVFIENYKVSSPDPKT-ETTLDSSEAEL 353
BLAST of mRNA_M-pyrifera_M_contig116792.3478.1 vs. uniprot
Match: UPI001F148663 (IS110 family transposase n=2 Tax=Flavobacterium sp. HJ-32-4 TaxID=1160795 RepID=UPI001F148663) HSP 1 Score: 207 bits (528), Expect = 5.740e-64 Identity = 99/122 (81.15%), Postives = 114/122 (93.44%), Query Frame = 1
Query: 4 TIKGVGIMTIATVIAETLGFEHVKNAKQLVSYAGYDVVERESGTSVKGKTRISKKGNRYIRNAMYFPAMVACRYNPDLKNTYLRIIQRKPSKMIGQVAIQRKLLILIYTLWKNDTVFIEDYQ 369
TIKGVG++TIAT+IAET GF ++NA+QL S+AGYDVV+RESGTS+KGKTRISKKGNRYIRNA+YFPAMVACR+NPD+K TYLRI Q KPSKMIGQVAIQRKLL+L+YTLWKNDTVFIE Y+
Sbjct: 213 TIKGVGLITIATIIAETDGFYQIRNARQLASFAGYDVVQRESGTSIKGKTRISKKGNRYIRNALYFPAMVACRFNPDMKQTYLRINQNKPSKMIGQVAIQRKLLLLMYTLWKNDTVFIEGYK 334
BLAST of mRNA_M-pyrifera_M_contig116792.3478.1 vs. uniprot
Match: A0A519U0A8_9SPHI (IS110 family transposase (Fragment) n=1 Tax=Pedobacter sp. TaxID=1411316 RepID=A0A519U0A8_9SPHI) HSP 1 Score: 202 bits (513), Expect = 2.520e-63 Identity = 104/144 (72.22%), Postives = 121/144 (84.03%), Query Frame = 1
Query: 1 LTIKGVGIMTIATVIAETLGFEHVKNAKQLVSYAGYDVVERESGTSVKGKTRISKKGNRYIRNAMYFPAMVACRYNPDLKNTYLRIIQR-KPSKMIGQVAIQRKLLILIYTLWKNDTVFIEDYQNKVAQAKSARATLDSSIIEL 429
LTIKGVG++T AT+IAET+GFE ++KQLVSY+GYDVV+RESGTS+KGKTRISKKGNRYIRNA+YFPAMVACR+N LK TY+RI + K SKMIGQVAIQRKLL+LIYTLWKNDT FIE+YQ K+ T DSS+ EL
Sbjct: 78 LTIKGVGLITAATIIAETMGFEQFHSSKQLVSYSGYDVVQRESGTSIKGKTRISKKGNRYIRNALYFPAMVACRHNETLKETYIRINRNNKASKMIGQVAIQRKLLVLIYTLWKNDTEFIENYQRGSLDPKT-ETTQDSSVAEL 220
BLAST of mRNA_M-pyrifera_M_contig116792.3478.1 vs. uniprot
Match: A0A2X2J5N2_SPHMU (Transposase IS116/IS110/IS902 family n=4 Tax=Sphingobacteriaceae TaxID=84566 RepID=A0A2X2J5N2_SPHMU) HSP 1 Score: 204 bits (519), Expect = 1.620e-62 Identity = 104/144 (72.22%), Postives = 122/144 (84.72%), Query Frame = 1
Query: 1 LTIKGVGIMTIATVIAETLGFEHVKNAKQLVSYAGYDVVERESGTSVKGKTRISKKGNRYIRNAMYFPAMVACRYNPDLKNTYLRIIQR-KPSKMIGQVAIQRKLLILIYTLWKNDTVFIEDYQNKVAQAKSARATLDSSIIEL 429
LTIKGVG++T+AT++AET+GFE ++KQLVSY+GYDVV+RESGTS+KGKTRISKKGNRYIRNA+YFPAMVACRYN LK TY+RI + K SKMIGQVAIQRKLL+LIYTLWKNDT FIE+YQ K+ T DSS+ EL
Sbjct: 212 LTIKGVGLITVATILAETMGFEQFHSSKQLVSYSGYDVVQRESGTSIKGKTRISKKGNRYIRNALYFPAMVACRYNEALKETYIRINKNNKASKMIGQVAIQRKLLVLIYTLWKNDTEFIENYQRGSLDPKT-ETTQDSSVAEL 354
BLAST of mRNA_M-pyrifera_M_contig116792.3478.1 vs. uniprot
Match: A0A1W2F9R1_9SPHI (Transposase n=1 Tax=Pedobacter nyackensis TaxID=475255 RepID=A0A1W2F9R1_9SPHI) HSP 1 Score: 202 bits (514), Expect = 8.930e-62 Identity = 99/143 (69.23%), Postives = 121/143 (84.62%), Query Frame = 1
Query: 1 LTIKGVGIMTIATVIAETLGFEHVKNAKQLVSYAGYDVVERESGTSVKGKTRISKKGNRYIRNAMYFPAMVACRYNPDLKNTYLRIIQRKPSKMIGQVAIQRKLLILIYTLWKNDTVFIEDYQNKVAQAKSARATLDSSIIEL 429
LTI+GVG++T+AT++AET+GF+ + KQLVSY+GYDVV+RESGTS+KGKTRISKKGNRYIRNA+YFPAMVACRYN LK Y+RI Q+K SKM+GQVAIQRKLLILIYTLWKNDT F+E+Y+ + T DSS++EL
Sbjct: 212 LTIRGVGLITLATILAETMGFKQFGSVKQLVSYSGYDVVQRESGTSIKGKTRISKKGNRYIRNALYFPAMVACRYNESLKEIYMRINQKKSSKMVGQVAIQRKLLILIYTLWKNDTEFMENYKGS-SPDPIIETTQDSSVVEL 353
BLAST of mRNA_M-pyrifera_M_contig116792.3478.1 vs. uniprot
Match: A0A2D9FXG6_9BACT (IS110 family transposase n=1 Tax=Balneola sp. TaxID=2024824 RepID=A0A2D9FXG6_9BACT) HSP 1 Score: 190 bits (483), Expect = 3.690e-57 Identity = 97/137 (70.80%), Postives = 113/137 (82.48%), Query Frame = 1
Query: 4 TIKGVGIMTIATVIAETLGFEHVKNAKQLVSYAGYDVVERESGTSVKGKTRISKKGNRYIRNAMYFPAMVACRYNPDLKNTYLRIIQRKPSKMIGQVAIQRKLLILIYTLWKNDTVFIEDYQNKVAQAKSARATLDS 414
+IKGVG +T+A ++AET FE + N +QL SYAGYDV ERESGTSVKGKTRISKKGNRYIRNA+YFPAMVACR+NPDLK Y R+I+ KPSKMIGQVA+QRKLL+L+Y+L KN T + E Y NKVA A ATLDS
Sbjct: 213 SIKGVGRLTVAVILAETRMFEGICNTRQLASYAGYDVTERESGTSVKGKTRISKKGNRYIRNALYFPAMVACRFNPDLKEFYGRVIRNKPSKMIGQVAVQRKLLLLMYSLHKNGTRYQEGY-NKVAPTPKAEATLDS 348
BLAST of mRNA_M-pyrifera_M_contig116792.3478.1 vs. uniprot
Match: A0A3B8VJ58_9BACT (IS110 family transposase n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A3B8VJ58_9BACT) HSP 1 Score: 187 bits (475), Expect = 5.880e-56 Identity = 93/137 (67.88%), Postives = 115/137 (83.94%), Query Frame = 1
Query: 4 TIKGVGIMTIATVIAETLGFEHVKNAKQLVSYAGYDVVERESGTSVKGKTRISKKGNRYIRNAMYFPAMVACRYNPDLKNTYLRIIQRKPSKMIGQVAIQRKLLILIYTLWKNDTVFIEDYQNKVAQAKSARATLDS 414
+IKGVG +T+A ++AET FE ++N +QLVSYAGYDVVERESGTS+KGK+RISKKGNR+IRNA+YFPAMVACR+NPDLK Y RIIQ KPSKM+GQVA+QRKLL+L+Y+L+KN + + Y NKVA A AT D+
Sbjct: 213 SIKGVGRLTVAVILAETKMFEGIENVRQLVSYAGYDVVERESGTSIKGKSRISKKGNRFIRNALYFPAMVACRFNPDLKEFYHRIIQNKPSKMVGQVAVQRKLLVLMYSLYKNGSQYQVGY-NKVAPIPMAEATRDN 348
BLAST of mRNA_M-pyrifera_M_contig116792.3478.1 vs. uniprot
Match: A0A7C2MI32_9FLAO (IS110 family transposase n=1 Tax=Salinimicrobium catena TaxID=390640 RepID=A0A7C2MI32_9FLAO) HSP 1 Score: 170 bits (431), Expect = 3.430e-49 Identity = 85/126 (67.46%), Postives = 101/126 (80.16%), Query Frame = 1
Query: 1 LTIKGVGIMTIATVIAETLGFEHVKNAKQLVSYAGYDVVERESGTSVKGKTRISKKGNRYIRNAMYFPAMVACRYNPDLKNTYLRIIQRKPSKMIGQVAIQRKLLILIYTLWKNDTVFIEDYQNKV 378
+T KG+GI TIA V+AET GFE V+N +QL SYAG+DVV RESGTSVKGKTRISKKGN IR A+YFPA+VA ++N DL Y RII+ KPSKM+G A+QRKLLILIYTLWKND + ++Y N V
Sbjct: 213 MTTKGLGITTIAVVVAETQGFEFVQNIRQLTSYAGFDVVRRESGTSVKGKTRISKKGNSRIRAALYFPALVAVQHNKDLSKAYYRIIEGKPSKMVGITALQRKLLILIYTLWKNDQEYQDNYLNTV 338 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116792.3478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig116792.3478.1 >prot_M-pyrifera_M_contig116792.3478.1 ID=prot_M-pyrifera_M_contig116792.3478.1|Name=mRNA_M-pyrifera_M_contig116792.3478.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp MTIATVIAETLGFEHVKNAKQLVSYAGYDVVERESGTSVKGKTRISKKGNback to top mRNA from alignment at M-pyrifera_M_contig116792:124..558- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig116792.3478.1 ID=mRNA_M-pyrifera_M_contig116792.3478.1|Name=mRNA_M-pyrifera_M_contig116792.3478.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=435bp|location=Sequence derived from alignment at M-pyrifera_M_contig116792:124..558- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig116792:124..558- >mRNA_M-pyrifera_M_contig116792.3478.1 ID=mRNA_M-pyrifera_M_contig116792.3478.1|Name=mRNA_M-pyrifera_M_contig116792.3478.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig116792:124..558- (Macrocystis pyrifera P11B4 male)back to top |