mRNA_M-pyrifera_M_contig11674.3466.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11674.3466.1
Unique NamemRNA_M-pyrifera_M_contig11674.3466.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig11674.3466.1 vs. uniprot
Match: D7FJF4_ECTSI (Signal recognition particle receptor subunit beta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJF4_ECTSI)

HSP 1 Score: 345 bits (886), Expect = 2.480e-114
Identity = 202/294 (68.71%), Postives = 225/294 (76.53%), Query Frame = 1 
Query:  253 GIVAQILASGKGGNPAALSVLKSLLASLEALLSEFGLPSASVVCAALAVATLAFAFVRKVAIDGGXXXXXXALAKKRKGVVLFLGPCGSGKTALCYRLSHDQAA---PTVTSMQACKYDGS-----RLIEDRGSPPVS------LVDYPGHERLRGGVGEELRLADRVVFVLDGSCLVAQIAAGAELLYDILIDPSLEGCRGLMLALNKSDIKEAKVSRAKVLLQKELEKLRGTRXXXXTQGQEDDMPVATALGRPGQPFSLEVDSPCEVVVAACSVVGEGGLDPVVEFVRASV 1092
            G+VAQ LAS      A LS L+SLLASLE+ L+E+GLPSAS+V   +A+A      + KV I   XXXXXX    KRKGVVLFLGPCGSGKTA+CYRLSH       PT TSM+AC+Y  S      L+   G+ P S      LVDYPGHERLRGGVGEELR ADRVVF+LDGSCL AQ+AAGAELLYD+L DPSLEGC+GLMLALNKSD+KEAK SRAK LLQKEL+KLRGTR    TQG+EDDMPVA ALGRPGQPFSLEVDSPCEVVVA CSV  EGGLD VV+FVRAS+
Sbjct:   68 GVVAQALASNSDKAAAVLSQLESLLASLESFLAEYGLPSASLVFPGVAIAIFLLVLLGKVGIXXXXXXXXXX---KRKGVVLFLGPCGSGKTAMCYRLSHGGETGLVPTATSMEACRYPCSSGRLSELLARNGNGPSSSARSGSLVDYPGHERLRGGVGEELRGADRVVFMLDGSCLAAQVAAGAELLYDVLTDPSLEGCQGLMLALNKSDLKEAKASRAKTLLQKELDKLRGTRGMLGTQGEEDDMPVAMALGRPGQPFSLEVDSPCEVVVAGCSVAKEGGLDSVVDFVRASL 358
[Close]
BLAST of mRNA_M-pyrifera_M_contig11674.3466.1 vs. uniprot
Match: A0A835YTM3_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTM3_9STRA)

HSP 1 Score: 133 bits (335), Expect = 4.100e-34
Identity = 80/175 (45.71%), Postives = 108/175 (61.71%), Query Frame = 1 
Query:  565 PTVTSMQACKYDGSRLIEDRGSP-PVSLVDYPGHERLRGGVGEELRLADRVVFVLDGSCLVAQIAAGAELLYDILIDPSLEGCRGLMLALNKSDIKEAKVSRAKVLLQKELEKLRGTRXXXXTQGQEDDMPVAT--ALGRPGQPFSLEVDSPCEVVVAACSVVGEGGLDPVVEFV 1080
            P+  S+ A   DG+    D  S   V++ D+PGHERLRGG+  EL  +  V+F+LDG+ L +Q+  G E+LYDIL D S+E C+GL +  +K+D+K AK  R +  L KELE+LR TR     QG+ED     +   LGR GQP  L VD PC + V  CSV GEG L+ V +F+
Sbjct:    3 PSSLSIHA---DGTPDATDGSSKGSVTVTDFPGHERLRGGLRGELATSTAVIFMLDGTDLSSQVRLGGEMLYDILTDSSIERCKGLAIGCSKADLKVAKPDRVRAALTKELEQLRTTRWSIGMQGEEDTGRPNSFIPLGRQGQPLDLVVDCPCPLTVFTCSVKGEG-LNAVRDFI 173
[Close]
BLAST of mRNA_M-pyrifera_M_contig11674.3466.1 vs. uniprot
Match: A0A6G0XMT9_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XMT9_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.990e-29
Identity = 83/233 (35.62%), Postives = 132/233 (56.65%), Query Frame = 1 
Query:  397 VATLAFAFVRKVAIDGGXXXXXXALAKKRKGVVLFLGPCGSGKTALCYRLSHDQAA-PTVTSMQACKYDGSRLIEDRGSPPVSLVDYPGHERLRGGVGEELRLADRVVFVLDGSCLV--AQIAAGAELLYDILIDPSL-EGCRGLMLALNKSDIKEAKV-SRAKVLLQKELEKLRGTRXXXXTQGQEDDMPVATALGRPGQPFSLEVDSPCEVVVAACSVVGEGGLDPVVEFV 1080
            V  L  AF+ K+A  G          + ++ V+L LGPCGSGKTAL +RL     +  TVTSM+      +  + D  +  VS++D+PGHERLR    +   +A ++VF++D + +    Q+   AE L+DI   P L +    +++A +K+D   A   SR ++LL+ EL +L+GTR    TQ  ++ +P    LGR   PF+ +VD+PCEVV  + S+    G+ P+++F+
Sbjct:   20 VLLLLVAFIIKLAASGSGP-------RGKRDVILLLGPCGSGKTALFHRLRDGAVSVETVTSMKETME--TFPLHDEETANVSVLDFPGHERLRSQAPQFYPIAKKIVFIVDATTVSDPLQVRKAAEFLFDIFTHPKLNDNGIPVLIACSKADQATAAAPSRIQLLLEAELTQLKGTRASLDTQDDDESIP----LGRENVPFAFDVDAPCEVVFESYSIHTPNGVAPLLDFI 239
[Close]
BLAST of mRNA_M-pyrifera_M_contig11674.3466.1 vs. uniprot
Match: A0A024TLZ7_9STRA (Signal recognition particle receptor subunit beta n=7 Tax=Aphanomyces TaxID=100860 RepID=A0A024TLZ7_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.050e-28
Identity = 82/234 (35.04%), Postives = 128/234 (54.70%), Query Frame = 1 
Query:  394 AVATLAFAFVRKVAIDGGXXXXXXALAKKRKGVVLFLGPCGSGKTALCYRLSHDQA-APTVTSMQACKYDGSRLIEDRGSPPVSLVDYPGHERLRGGVGEELRLADRVVFVLDGSCL--VAQIAAGAELLYDILIDPSL-EGCRGLMLALNKSDIKEAKV-SRAKVLLQKELEKLRGTRXXXXTQGQEDDMPVATALGRPGQPFSLEVDSPCEVVVAACSVVGEGGLDPVVEFV 1080
            AV  L  AF+ K+A  G            ++ V+L LGPCG GKTAL +RL    +   TVTSM+          E+  +  VS++D+PGHERLR  V +   +A ++VFV+D + +   AQ+   AE LYDI + P + +    L++A +K+D+  A   S  + LL+ EL +L+ TR        ++ +P    LGR   PF+ +VD+PCEVV  + S+     + P+++F+
Sbjct:   19 AVLVLLLAFIIKLAASGSSPGG-------KRDVILLLGPCGGGKTALFHRLRDGPSKVDTVTSMKETLETFPLFDEEAAT--VSVLDFPGHERLRSQVSQFYPIAKKLVFVVDATTVGDAAQVRKAAEFLYDIFVHPKVHDNGIPLLVACSKADVATAATPSHIQSLLETELSQLKSTRASLEAHDDDESIP----LGRENVPFAFDVDAPCEVVFESYSIHSAEAIAPLLDFI 239
[Close]
BLAST of mRNA_M-pyrifera_M_contig11674.3466.1 vs. uniprot
Match: A0A485KDV8_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDV8_9STRA)

HSP 1 Score: 119 bits (298), Expect = 5.680e-28
Identity = 81/234 (34.62%), Postives = 128/234 (54.70%), Query Frame = 1 
Query:  394 AVATLAFAFVRKVAIDGGXXXXXXALAKKRKGVVLFLGPCGSGKTALCYRLSHDQAAPTVTSMQACKYD-GSRLIEDRGSPPVSLVDYPGHERLRGGVGEELRLADRVVFVLDGSCLV--AQIAAGAELLYDILIDPSLEGCR-GLMLALNKSDIKEAKV-SRAKVLLQKELEKLRGTRXXXXTQGQEDDMPVATALGRPGQPFSLEVDSPCEVVVAACSVVGEGGLDPVVEFV 1080
            AV  L  AF+ K+A  G            ++ V+L +GPCG GKTAL +RL  D  +PT+ ++ + K    S  + D  S  VS++D+PGHERLR  V +   +A ++VFV+D + +   AQ+   AE L+D+   P L      +++A +KSD+  A    R + LL+ EL +L+ TR        ++ +P    LGR   PF+ +VD+PCEVV    S+     + P+++F+
Sbjct:   19 AVLLLLVAFIIKMAASGSGPGG-------KRDVILLVGPCGGGKTALFHRL-RDGPSPTLETVTSMKETLESFPLFDEDSANVSVLDFPGHERLRSQVSQFYPIAKKLVFVVDSTTVSDPAQVRKAAEFLFDVFTHPKLNDTAIPVLIACSKSDLTTAAAPGRIQSLLEAELTQLKSTRASLEAHDDDESIP----LGRDNVPFAFDVDAPCEVVFETYSIHSAEAIAPLLDFI 240
[Close]
BLAST of mRNA_M-pyrifera_M_contig11674.3466.1 vs. uniprot
Match: A0A1V9ZHQ0_9STRA (Signal recognition particle receptor subunit beta n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZHQ0_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.170e-26
Identity = 78/238 (32.77%), Postives = 123/238 (51.68%), Query Frame = 1 
Query:  388 ALAVATLAFAFVRKVAIDGGXXXXXXALAKKRKGVVLFLGPCGSGKTALCYRLSHDQA-APTVTSMQACKYDGSRLIEDRGSPPVSLVDYPGHERLRGGVGEELRLADRVVFVLDGSCL--VAQIAAGAELLYDILIDPSLEGCR-GLMLALNKSD-IKEAKVSRAKVLLQKELEKLRGTRXXXXTQGQEDDMPVATALGRPGQPFSLEVDSPCEVVVAACSVVGEGGLDPVVEFVRA 1086
            A A A L   FV      GG       +   ++ +VL +GPCG+GKTAL +RL        TVTSM+          E+  +   ++ D+PGHER+R   G+   +A +++FV+D +       I   AE LYDI   P +      +M+A +KSD  K A  +  + LL+ EL +L+ TR      G++D+   +  LGR   PF+ ++D+PCEV     S+V    L+P+++F+ +
Sbjct:   15 AAAGAALVLFFVLLKLCSGGS-----GIRSSKRDIVLLVGPCGAGKTALFHRLRDGPTKVTTVTSMKETMEKFPLFDEENAT--FNICDFPGHERMRSQAGQFYPIAKKIIFVVDSTTANDAGHIRKAAEFLYDIFTHPKVNDAGVPVMIACSKSDETKAATSATVRSLLESELTQLKSTRASLEAHGEDDE---SIPLGRDNAPFAFDIDAPCEVTFENYSIVTPEALNPLLDFIMS 242
[Close]
BLAST of mRNA_M-pyrifera_M_contig11674.3466.1 vs. uniprot
Match: W7U264_9STRA (Signal recognition particle receptor subunit beta n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U264_9STRA)

HSP 1 Score: 112 bits (280), Expect = 1.320e-24
Identity = 76/208 (36.54%), Postives = 118/208 (56.73%), Query Frame = 1 
Query:  475 KKRKGVVLFLGPCGSGKTALCYRLSHDQAAPTVTSMQACKYDGSRLIEDRGSPPVSLVDYPGHERLRGGVGEELRLADRV---VFVLDGSCLVA-QIAAGAELLYDILIDPSLEGCRGLMLALNKSDIKEAKV-SRAKVLLQKELEKLRGTRXXXXTQGQEDDMPVATALGRPGQPFSLEVDSPCEVVVAACSVVGE---GGLDPVVE 1074
            + R   V+ LGPCG+GKTAL ++L ++    TVTSM     +   +++D+    + LVD+PGHERLRGG  ++   A +V   +FV+D +     ++   AE LYDIL   +++    L++A +KSD+  AK  +R K LL  ELE+LR T+      G  ++      LGR   P +L+VD+P E+  A+ +V  +   GG D + E
Sbjct:  117 RARPSHVVLLGPCGAGKTALYHQLLYNTVPETVTSM----VESEGILKDKD---IRLVDFPGHERLRGGWKKQFLDAGKVAGVIFVVDAADFSTHKVREAAEFLYDILTHAAMDDGPPLLVACHKSDLPGAKAPARIKALLTSELERLRKTQGGAMMDGNGEEEEDRLPLGRVAVPLNLDVDAPSELTFASTNVAQQTQFGGNDAIEE 317
[Close]
BLAST of mRNA_M-pyrifera_M_contig11674.3466.1 vs. uniprot
Match: A0A7S3JR42_9STRA (Signal recognition particle receptor subunit beta (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JR42_9STRA)

HSP 1 Score: 107 bits (268), Expect = 5.750e-24
Identity = 76/189 (40.21%), Postives = 98/189 (51.85%), Query Frame = 1 
Query:  475 KKRKGVVLFLGPCGSGKTALCYRLSHDQAAPTVTSMQACKYDGSRLIEDRGSP---PVSLVDYPGHERLRGGVGEELRLADRVVFVLDGSCLVAQIAAGAELLYDIL--IDPSLEGCRGLMLALNKSDIKEAKVS-RAKVLLQKELEKLRGTRXXXXTQGQEDDMPVATA-LGRPGQPFSLEVDSPCEV 1020
            + R   +L +GPCGSGKT L YRL HD+   TV+SMQ          E   SP   P+ LVD PGH RLRG + +EL  A  ++FV D S  + Q    AELLY IL     S  G   L+   NKSD K  K + R K+++  E+E LR T     +           A LG PGQ F+ +  SPC++
Sbjct:   28 RTRSASILIVGPCGSGKTLLFYRLVHDETVDTVSSMQP--------NESPASPDGLPLRLVDLPGHYRLRGLLPDELECAQAIIFVFDASDALKQAKPAAELLYAILSTFADSKTG-PDLLFICNKSDNKVVKTTQRVKLMMMNEIETLRKTENSIQSTADGASSSSEQAKLGIPGQFFNFDAHSPCKI 207
[Close]
BLAST of mRNA_M-pyrifera_M_contig11674.3466.1 vs. uniprot
Match: A0A8K1FBH7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FBH7_PYTOL)

HSP 1 Score: 108 bits (270), Expect = 7.660e-24
Identity = 82/207 (39.61%), Postives = 108/207 (52.17%), Query Frame = 1 
Query:  481 RKGVVLFLGPCGSGKTALCYRLSHDQAAPTVTSMQACKYDGSRLIEDRGSP-----PVSLVDYPGHERLRGGVGEELRLADRVVFVLDGSCLVAQIAAGAELLYDILIDPSLEGCRGLML-ALNKSDIKEAK-VSRAKVLLQKELEKLRGTRXXXXTQGQEDDMPVATALGRPGQPFSLEVDSPCEVVVAACSVVGEGGLDPVVEFV 1080
            +K + + LGP G+GKTAL ++L   +   TVTSM   + +G   + DR +       +S+VDYPGHERLR  V +   +   VVFV+D +         AE LYDI  +         ML A NK+DIK A  V   K  L+KEL KL+ TR    T+G+ED   V   +GR G  F   VD+PCEV     S    G +D V  FV
Sbjct:   53 KKKMTMLLGPRGAGKTALFHQLRDGRFVETVTSMT--ELEGKFAVHDRYNTINFGAHLSIVDYPGHERLRSRVADYYPVTGCVVFVVDAAD--QSFRKAAEYLYDIFSNAKFNDLAPRMLIACNKTDIKSAATVEVVKEALEKELTKLKKTRSSLETEGEEDTSVVP--VGRDGVAFEFAVDAPCEVTFVKSSFKA-GDVDDVATFV 252
[Close]
BLAST of mRNA_M-pyrifera_M_contig11674.3466.1 vs. uniprot
Match: A0A067D7V6_SAPPC (Signal recognition particle receptor subunit beta n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D7V6_SAPPC)

HSP 1 Score: 105 bits (262), Expect = 8.060e-23
Identity = 67/202 (33.17%), Postives = 109/202 (53.96%), Query Frame = 1 
Query:  490 VVLFLGPCGSGKTALCYRLSHDQA-APTVTSMQACKYDGSRLIEDRGSPPVSLVDYPGHERLRGGVGEELRLADRVVFVLDGSCL--VAQIAAGAELLYDILIDPSLEGCR-GLMLALNKSD-IKEAKVSRAKVLLQKELEKLRGTRXXXXTQGQEDDMPVATALGRPGQPFSLEVDSPCEVVVAACSVVGEGGLDPVVEFV 1080
            VVL +GPCG+GKTAL +RL +      TVTSM+          E+  +  +S+ D+PGHER+R    +   +A +++FV+D +     + I   AE LYDI   P +      +M+A +K+D +K A  +  + LL+ EL +L+ TR      G +D+   +  LGR    F   +D+PC+V     S+     L+P+++F+
Sbjct:   44 VVLLVGPCGAGKTALFHRLRNGPTKVETVTSMKETMETFPLFDEENAT--ISICDFPGHERMRSTATQFYPIAKKIIFVVDATTANDASHIRKAAEFLYDIFTHPKINDAGVPVMIACSKTDDVKAATPATVQSLLETELTQLKSTRASLEAHGDDDE---SIPLGRDNALFEFAIDAPCDVTFEGYSIQTPDALNPLLDFI 240
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11674.3466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJF4_ECTSI2.480e-11468.71Signal recognition particle receptor subunit beta ... [more]
A0A835YTM3_9STRA4.100e-3445.71Signal recognition particle receptor subunit beta ... [more]
A0A6G0XMT9_9STRA1.990e-2935.62Signal recognition particle receptor subunit beta ... [more]
A0A024TLZ7_9STRA2.050e-2835.04Signal recognition particle receptor subunit beta ... [more]
A0A485KDV8_9STRA5.680e-2834.62Signal recognition particle receptor subunit beta ... [more]
A0A1V9ZHQ0_9STRA2.170e-2632.77Signal recognition particle receptor subunit beta ... [more]
W7U264_9STRA1.320e-2436.54Signal recognition particle receptor subunit beta ... [more]
A0A7S3JR42_9STRA5.750e-2440.21Signal recognition particle receptor subunit beta ... [more]
A0A8K1FBH7_PYTOL7.660e-2439.61Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A067D7V6_SAPPC8.060e-2333.17Signal recognition particle receptor subunit beta ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11674contigM-pyrifera_M_contig11674:2340..3437 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score345.9
Seed ortholog evalue2.3e-92
Seed eggNOG ortholog2880.D7FJF4
Preferred nameSRPRB
KEGG koko:K12272,ko:K13343,ko:K14736
KEGG TC3.A.20.1,3.A.5.8
KEGG Pathwayko03060,ko04066,ko04146,ko04216,ko04978,map03060,map04066,map04146,map04216,map04978
Hectar predicted targeting categoryother localisation
GOsGO:0000041,GO:0000166,GO:0001666,GO:0001882,GO:0001883,GO:0002164,GO:0002165,GO:0002168,GO:0002526,GO:0003002,GO:0003674,GO:0003824,GO:0003924,GO:0005047,GO:0005488,GO:0005506,GO:0005515,GO:0005525,GO:0005575,GO:0005576,GO:0005604,GO:0005615,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005785,GO:0005789,GO:0005791,GO:0005856,GO:0005874,GO:0005881,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006810,GO:0006811,GO:0006812,GO:0006826,GO:0006873,GO:0006875,GO:0006879,GO:0006886,GO:0006915,GO:0006950,GO:0006952,GO:0006953,GO:0006954,GO:0006986,GO:0007154,GO:0007165,GO:0007275,GO:0007389,GO:0007399,GO:0007591,GO:0008104,GO:0008150,GO:0008199,GO:0008219,GO:0008284,GO:0008363,GO:0009628,GO:0009719,GO:0009725,GO:0009791,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010243,GO:0010288,GO:0010720,GO:0012501,GO:0012505,GO:0014013,GO:0014015,GO:0014070,GO:0014074,GO:0015031,GO:0015630,GO:0015682,GO:0015833,GO:0016020,GO:0016021,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019725,GO:0019899,GO:0022008,GO:0023052,GO:0030001,GO:0030003,GO:0030154,GO:0030176,GO:0030867,GO:0030968,GO:0031012,GO:0031090,GO:0031224,GO:0031227,GO:0031625,GO:0031641,GO:0031643,GO:0031644,GO:0031646,GO:0031984,GO:0032354,GO:0032501,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032870,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034620,GO:0034698,GO:0034976,GO:0035017,GO:0035293,GO:0035639,GO:0035966,GO:0035967,GO:0036094,GO:0036293,GO:0036498,GO:0040003,GO:0042127,GO:0042175,GO:0042221,GO:0042303,GO:0042335,GO:0042337,GO:0042592,GO:0042886,GO:0043021,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044057,GO:0044389,GO:0044421,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045184,GO:0045595,GO:0045597,GO:0046683,GO:0046872,GO:0046907,GO:0046914,GO:0046916,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050767,GO:0050769,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051094,GO:0051179,GO:0051234,GO:0051239,GO:0051240,GO:0051286,GO:0051591,GO:0051641,GO:0051649,GO:0051716,GO:0051960,GO:0051962,GO:0055065,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0060284,GO:0062023,GO:0065007,GO:0065008,GO:0070445,GO:0070447,GO:0070482,GO:0070727,GO:0070887,GO:0070972,GO:0071310,GO:0071320,GO:0071371,GO:0071372,GO:0071407,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0072512,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097159,GO:0097367,GO:0098588,GO:0098771,GO:0098796,GO:0098827,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1901265,GO:1901363,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:2000026,GO:2000177,GO:2000179
EggNOG free text desc.signal recognition particle binding
EggNOG OGsCOG2229@1,KOG0090@2759
Ec32 ortholog descriptionSRPRB, beta subunit of the signal recognition particle receptor
Ec32 orthologEc-14_006140.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02044,ko04031,ko04131,ko04147
Exons1
Model size1098
Cds size1098
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815684.083194-CDS-M-pyrifera_M_contig11674:2339..34371622815684.083194-CDS-M-pyrifera_M_contig11674:2339..3437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11674 2340..3437 +
1692277520.4648895-CDS-M-pyrifera_M_contig11674:2339..34371692277520.4648895-CDS-M-pyrifera_M_contig11674:2339..3437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11674 2340..3437 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11674.3466.1prot_M-pyrifera_M_contig11674.3466.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11674 2340..3437 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11674.3466.1

>prot_M-pyrifera_M_contig11674.3466.1 ID=prot_M-pyrifera_M_contig11674.3466.1|Name=mRNA_M-pyrifera_M_contig11674.3466.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=366bp
MLETTTVHVAPMVLHHGRRMDAASSSSGGGCSSGSGCCSSSSRADFWMLR
VAIALLASSTFVASSSTGEELGAETLSSSASAEDGIVAQILASGKGGNPA
ALSVLKSLLASLEALLSEFGLPSASVVCAALAVATLAFAFVRKVAIDGGG
GGSGGALAKKRKGVVLFLGPCGSGKTALCYRLSHDQAAPTVTSMQACKYD
GSRLIEDRGSPPVSLVDYPGHERLRGGVGEELRLADRVVFVLDGSCLVAQ
IAAGAELLYDILIDPSLEGCRGLMLALNKSDIKEAKVSRAKVLLQKELEK
LRGTRGTLGTQGQEDDMPVATALGRPGQPFSLEVDSPCEVVVAACSVVGE
GGLDPVVEFVRASVR*
back to top

mRNA from alignment at M-pyrifera_M_contig11674:2340..3437+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11674.3466.1 ID=mRNA_M-pyrifera_M_contig11674.3466.1|Name=mRNA_M-pyrifera_M_contig11674.3466.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1098bp|location=Sequence derived from alignment at M-pyrifera_M_contig11674:2340..3437+ (Macrocystis pyrifera P11B4 male)
ATGCTTGAGACCACGACGGTTCACGTCGCTCCCATGGTGCTGCATCACGG
TAGACGTATGGATGCCGCCAGCAGCAGCAGCGGCGGCGGCTGCAGCAGCG
GCAGCGGTTGCTGCAGCAGCAGTAGCAGAGCAGACTTCTGGATGCTTCGC
GTAGCAATCGCTCTCCTCGCATCTTCCACGTTTGTGGCGTCTTCGTCGAC
TGGTGAAGAACTGGGCGCCGAAACTCTCAGCAGCTCGGCATCTGCAGAGG
ACGGCATCGTGGCCCAAATCCTCGCTTCGGGAAAAGGAGGCAATCCCGCC
GCCCTGTCCGTGCTCAAGTCGCTTCTGGCCTCGCTTGAAGCGCTCCTCTC
GGAGTTCGGCTTGCCGTCCGCCTCCGTAGTGTGCGCGGCGCTCGCCGTGG
CGACTCTCGCTTTCGCCTTCGTGCGAAAGGTCGCTATCGATGGTGGCGGC
GGTGGCAGCGGCGGAGCGTTGGCGAAGAAACGCAAGGGCGTGGTGCTGTT
CCTCGGCCCTTGTGGTTCTGGCAAAACGGCCTTGTGCTACCGTCTCTCCC
ACGACCAAGCGGCCCCGACGGTCACCTCAATGCAGGCCTGCAAATACGAC
GGCAGCAGGCTTATCGAGGACCGTGGCTCCCCTCCCGTCTCCCTGGTAGA
CTACCCGGGGCACGAGAGGCTCCGAGGCGGGGTGGGGGAAGAGCTTCGCT
TGGCCGATCGGGTCGTGTTCGTTCTCGACGGCTCTTGCCTCGTGGCGCAG
ATCGCCGCGGGCGCGGAGCTCTTGTACGACATTCTGATCGACCCTTCCCT
GGAGGGGTGCCGGGGACTGATGTTAGCGCTCAACAAGAGCGATATCAAGG
AGGCTAAGGTCTCCCGGGCGAAGGTCCTGCTGCAGAAAGAGCTCGAGAAG
CTCAGGGGTACTCGCGGGACGCTTGGAACCCAGGGACAGGAGGACGACAT
GCCTGTCGCGACGGCGTTGGGTCGACCGGGACAACCGTTCAGCTTGGAGG
TGGACTCCCCGTGCGAAGTTGTGGTCGCGGCGTGTTCGGTTGTGGGCGAG
GGAGGTCTGGACCCGGTGGTCGAATTTGTGCGTGCTTCGGTACGTTAA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig11674:2340..3437+

>mRNA_M-pyrifera_M_contig11674.3466.1 ID=mRNA_M-pyrifera_M_contig11674.3466.1|Name=mRNA_M-pyrifera_M_contig11674.3466.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=2196bp|location=Sequence derived from alignment at M-pyrifera_M_contig11674:2340..3437+ (Macrocystis pyrifera P11B4 male)
ATGCTTGAGACCACGACGGTTCACGTCGCTCCCATGGTGCTGCATCACGG
TAGACGTATGGATGCCGCCAGCAGCAGCAGCGGCGGCGGCTGCAGCAGCG
GCAGCGGTTGCTGCAGCAGCAGTAGCAGAGCAGACTTCTGGATGCTTCGC
GTAGCAATCGCTCTCCTCGCATCTTCCACGTTTGTGGCGTCTTCGTCGAC
TGGTGAAGAACTGGGCGCCGAAACTCTCAGCAGCTCGGCATCTGCAGAGG
ACGGCATCGTGGCCCAAATCCTCGCTTCGGGAAAAGGAGGCAATCCCGCC
GCCCTGTCCGTGCTCAAGTCGCTTCTGGCCTCGCTTGAAGCGCTCCTCTC
GGAGTTCGGCTTGCCGTCCGCCTCCGTAGTGTGCGCGGCGCTCGCCGTGG
CGACTCTCGCTTTCGCCTTCGTGCGAAAGGTCGCTATCGATGGTGGCGGC
GGTGGCAGCGGCGGAGCGTTGGCGAAGAAACGCAAGGGCGTGGTGCTGTT
CCTCGGCCCTTGTGGTTCTGGCAAAACGGCCTTGTGCTACCGTCTCTCCC
ACGACCAAGCGGCCCCGACGGTCACCTCAATGCAGGCCTGCAAATACGAC
GGCAGCAGGCTTATCGAGGACCGTGGCTCCCCTCCCGTCTCCCTGGTAGA
CTACCCGGGGCACGAGAGGCTCCGAGGCGGGGTGGGGGAAGAGCTTCGCT
TGGCCGATCGGGTCGTGTTCGTTCTCGACGGCTCTTGCCTCGTGGCGCAG
ATCGCCGCGGGCGCGGAGCTCTTGTACGACATTCTGATCGACCCTTCCCT
GGAGGGGTGCCGGGGACTGATGTTAGCGCTCAACAAGAGCGATATCAAGG
AGGCTAAGGTCTCCCGGGCGAAGGTCCTGCTGCAGAAAGAGCTCGAGAAG
CTCAGGGGTACTCGCGGGACGCTTGGAACCCAGGGACAGGAGGACGACAT
GCCTGTCGCGACGGCGTTGGGTCGACCGGGACAACCGTTCAGCTTGGAGG
TGGACTCCCCGTGCGAAGTTGTGGTCGCGGCGTGTTCGGTTGTGGGCGAG
GGAGGTCTGGACCCGGTGGTCGAATTTGTGCGTGCTTCGGTACGTTAAAT
GCTTGAGACCACGACGGTTCACGTCGCTCCCATGGTGCTGCATCACGGTA
GACGTATGGATGCCGCCAGCAGCAGCAGCGGCGGCGGCTGCAGCAGCGGC
AGCGGTTGCTGCAGCAGCAGTAGCAGAGCAGACTTCTGGATGCTTCGCGT
AGCAATCGCTCTCCTCGCATCTTCCACGTTTGTGGCGTCTTCGTCGACTG
GTGAAGAACTGGGCGCCGAAACTCTCAGCAGCTCGGCATCTGCAGAGGAC
GGCATCGTGGCCCAAATCCTCGCTTCGGGAAAAGGAGGCAATCCCGCCGC
CCTGTCCGTGCTCAAGTCGCTTCTGGCCTCGCTTGAAGCGCTCCTCTCGG
AGTTCGGCTTGCCGTCCGCCTCCGTAGTGTGCGCGGCGCTCGCCGTGGCG
ACTCTCGCTTTCGCCTTCGTGCGAAAGGTCGCTATCGATGGTGGCGGCGG
TGGCAGCGGCGGAGCGTTGGCGAAGAAACGCAAGGGCGTGGTGCTGTTCC
TCGGCCCTTGTGGTTCTGGCAAAACGGCCTTGTGCTACCGTCTCTCCCAC
GACCAAGCGGCCCCGACGGTCACCTCAATGCAGGCCTGCAAATACGACGG
CAGCAGGCTTATCGAGGACCGTGGCTCCCCTCCCGTCTCCCTGGTAGACT
ACCCGGGGCACGAGAGGCTCCGAGGCGGGGTGGGGGAAGAGCTTCGCTTG
GCCGATCGGGTCGTGTTCGTTCTCGACGGCTCTTGCCTCGTGGCGCAGAT
CGCCGCGGGCGCGGAGCTCTTGTACGACATTCTGATCGACCCTTCCCTGG
AGGGGTGCCGGGGACTGATGTTAGCGCTCAACAAGAGCGATATCAAGGAG
GCTAAGGTCTCCCGGGCGAAGGTCCTGCTGCAGAAAGAGCTCGAGAAGCT
CAGGGGTACTCGCGGGACGCTTGGAACCCAGGGACAGGAGGACGACATGC
CTGTCGCGACGGCGTTGGGTCGACCGGGACAACCGTTCAGCTTGGAGGTG
GACTCCCCGTGCGAAGTTGTGGTCGCGGCGTGTTCGGTTGTGGGCGAGGG
AGGTCTGGACCCGGTGGTCGAATTTGTGCGTGCTTCGGTACGTTAA
back to top