mRNA_M-pyrifera_M_contig116418.3414.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig116418.3414.1
Unique NamemRNA_M-pyrifera_M_contig116418.3414.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig116418.3414.1 vs. uniprot
Match: A0A2E8L9L8_9ACTN (Uncharacterized protein n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8L9L8_9ACTN)

HSP 1 Score: 194 bits (494), Expect = 3.090e-57
Identity = 139/186 (74.73%), Postives = 149/186 (80.11%), Query Frame = 1
Query:    1 EGVVERVVAVAGESFDSRLQTGAAELDHRREAIDLRLNGTHQRIDEQLGSVVASLQAKVDEVDKIVXXXXXXXXXXXXXXXXXXXXXXXHQVTAMGGELQQVRSLVAQLQKERAQQHGQFVESLEAATRQQKVLAETTQHLREALASPQARGQWGERMAEDVLRAAGMREGLNYRKQRMIEGGTKP 558
            +GVVERVV+VAGESFDSRLQTG AEL+HRR+AID  L G           VV SL           XXXXXXXXXXXXXXXXXXXXXXX      G EL Q+R+LV QLQKERAQQHGQFVESLEAATRQQ+VLAETTQHLREALASPQARGQWGERMAEDVLR+AGMREG+NYRKQR IEGGT+P
Sbjct:   40 DGVVERVVSVAGESFDSRLQTGTAELEHRRQAIDDHLEG-----------VVKSLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTELTQLRNLVGQLQKERAQQHGQFVESLEAATRQQQVLAETTQHLREALASPQARGQWGERMAEDVLRSAGMREGINYRKQRAIEGGTRP 214          
BLAST of mRNA_M-pyrifera_M_contig116418.3414.1 vs. uniprot
Match: A0A358A4A0_9ACTN (DNA recombination protein RmuC n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358A4A0_9ACTN)

HSP 1 Score: 191 bits (486), Expect = 4.800e-56
Identity = 136/186 (73.12%), Postives = 149/186 (80.11%), Query Frame = 1
Query:    1 EGVVERVVAVAGESFDSRLQTGAAELDHRREAIDLRLNGTHQRIDEQLGSVVASLQAKVDEVDKIVXXXXXXXXXXXXXXXXXXXXXXXHQVTAMGGELQQVRSLVAQLQKERAQQHGQFVESLEAATRQQKVLAETTQHLREALASPQARGQWGERMAEDVLRAAGMREGLNYRKQRMIEGGTKP 558
            +GVVERVV VAGESFDSRLQTG AELDHRR+AID           + L +VV SL  K+       XXXXXXXXXXXXXXXXXXXXXXX        EL Q+R+LV QLQKERA+QHGQFV+SLEAATRQQ+VLAETTQHLR ALASPQARGQWGERMAEDVLR+AGMREG+NYRKQR IEGGT+P
Sbjct:   40 DGVVERVVNVAGESFDSRLQTGTAELDHRRQAID-----------DHLEAVVTSLAEKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTELTQLRNLVGQLQKERAEQHGQFVKSLEAATRQQQVLAETTQHLRNALASPQARGQWGERMAEDVLRSAGMREGINYRKQRAIEGGTRP 214          
BLAST of mRNA_M-pyrifera_M_contig116418.3414.1 vs. uniprot
Match: A0A3M2G4S8_ACTSX (DNA recombination protein RmuC n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2G4S8_ACTSX)

HSP 1 Score: 127 bits (319), Expect = 9.440e-32
Identity = 79/162 (48.77%), Postives = 97/162 (59.88%), Query Frame = 1
Query:   82 HRREAIDLRLNGTHQRID---EQLGSVVASLQAKVDEVDKIVXXXXXXXXXXXXXXXXXXXXXXXHQVTAMGGELQQVRSLVAQLQKERAQQHGQFVESLEAATRQQKVLAETTQHLREALASPQARGQWGERMAEDVLRAAGMREGLNYRKQRMIEGGTKP 558
            HRR A D      H  +D   E++  + A L+   D VDK+V                        QV  +  EL QVR LVA+LQKE+ +Q GQ V  L A T QQKVLAETTQ LREALA+PQ RGQWGERMA+DVLRAAG+RE +NY +Q+ + GGT+P
Sbjct:   35 HRRAAED------HSGVDRALERIERLDAELRRTFDAVDKLVETRVGGLTEVVGEKVTGMSSALDQQVGTINAELAQVRRLVAELQKEKERQSGQLVAGLRAVTEQQKVLAETTQSLREALANPQVRGQWGERMADDVLRAAGLRENVNYLRQQTLPGGTRP 190          
BLAST of mRNA_M-pyrifera_M_contig116418.3414.1 vs. uniprot
Match: A0A7V9GES5_9ACTN (DNA recombination protein RmuC (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9GES5_9ACTN)

HSP 1 Score: 102 bits (255), Expect = 3.460e-23
Identity = 57/96 (59.38%), Postives = 68/96 (70.83%), Query Frame = 1
Query:  271 QVTAMGGELQQVRSLVAQLQKERAQQHGQFVESLEAATRQQKVLAETTQHLREALASPQARGQWGERMAEDVLRAAGMREGLNYRKQRMIEGGTKP 558
            Q+T M   L+QV  LV  LQ +RA+QHG+ V  +  A    KVLA TT+ L  ALASPQARGQWGERMAEDVLRAAG  EG+NY KQR +  G++P
Sbjct:   98 QMTDMAAHLRQVGELVGSLQADRARQHGELVTRISEAQEVTKVLAGTTEGLHRALASPQARGQWGERMAEDVLRAAGFVEGVNYAKQRTLPDGSRP 193          
BLAST of mRNA_M-pyrifera_M_contig116418.3414.1 vs. uniprot
Match: A0A349B848_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B848_9ACTN)

HSP 1 Score: 103 bits (257), Expect = 9.550e-23
Identity = 59/96 (61.46%), Postives = 69/96 (71.88%), Query Frame = 1
Query:  271 QVTAMGGELQQVRSLVAQLQKERAQQHGQFVESLEAATRQQKVLAETTQHLREALASPQARGQWGERMAEDVLRAAGMREGLNYRKQRMIEGGTKP 558
            QVT +   L  +  LV  LQKERA+Q G  V  LE  TR Q+ LA+ T  LR+ALASP+ RGQWGERMAEDVLRAAG REG++YR+Q  IEGGT P
Sbjct:  100 QVTHIADALGTLGGLVQSLQKERAEQTGSLVAQLEHVTRTQQSLAQHTDQLRQALASPKQRGQWGERMAEDVLRAAGFREGVSYRRQTAIEGGTIP 195          
BLAST of mRNA_M-pyrifera_M_contig116418.3414.1 vs. uniprot
Match: A0A6G0A542_9ACTN (DNA recombination protein RmuC n=2 Tax=Bacteria TaxID=2 RepID=A0A6G0A542_9ACTN)

HSP 1 Score: 102 bits (254), Expect = 2.570e-22
Identity = 89/186 (47.85%), Postives = 114/186 (61.29%), Query Frame = 1
Query:    1 EGVVERVVAVAGESFDSRLQTGAAELDHRREAIDLRLNGTHQRIDEQLGSVVASLQAKVDEVDKIVXXXXXXXXXXXXXXXXXXXXXXXHQVTAMGGELQQVRSLVAQLQKERAQQHGQFVESLEAATRQQKVLAETTQHLREALASPQARGQWGERMAEDVLRAAGMREGLNYRKQRMIEGGTKP 558
            + V++RV A AG+  D  L +G+ +L+    A  LR         +Q  ++ A  Q   D      XXXXXXXXXXXXXXX    XXXX     M GEL +V  LVA +Q ERA+QHG+ V +LE A + Q  LA+T Q LREALA+P+ARG WGER AEDVLR AG  EG++Y ++R +  GT P
Sbjct:   37 QAVIDRVYAAAGDKLDDHLSSGSRQLELL--AHSLR---------QQFEAIQAETQRSSDLRXXXXXXXXXXXXXXXXXXXVHREXXXXXXXXVMKGELHRVSELVADMQSERARQHGEVVATLEEAAKAQAALADTAQGLREALANPKARGNWGERTAEDVLRLAGFVEGVSYHRRRQLPCGTVP 211          
BLAST of mRNA_M-pyrifera_M_contig116418.3414.1 vs. uniprot
Match: A0A496Y8L6_9DELT (DNA recombination protein RmuC n=3 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A496Y8L6_9DELT)

HSP 1 Score: 98.2 bits (243), Expect = 9.300e-21
Identity = 68/187 (36.36%), Postives = 98/187 (52.41%), Query Frame = 1
Query:    1 EGVVERVVAVAGESFDSRLQTGAAELDHRREAIDLRLNGTHQRIDEQLGSVVASLQAKVDEVDKIVXXXXXXXXXXXXXXXXXXXXXXXHQVTAMGGELQQVRSLVAQLQKERAQQHGQFVESLEAATRQQKVLAETTQHLREALASPQARGQWGERMAEDVLRAAGMREGLNYRKQRMIEG-GTKP 558
            E   +R   +     D +   G+  LD  +++ +  L     R+D +  S +  L AK   +D+                          Q+  MG ELQ+V +LV  L+K+R Q+ G+    L++A++Q   L ETT  LREAL+S Q+RGQWGERMAEDVLR AG  E +NY KQ+ +EG GT+P
Sbjct:   62 ESETQRKAGMEAVLADVKASFGSLSLDALQKSTEEFLKLAKSRLDAERESSLHDLDAKKGLIDQ--------------------------QLARMGTELQKVSTLVQDLEKDRVQKFGELTSQLKSASQQTNTLIETTNTLREALSSTQSRGQWGERMAEDVLRLAGFIENVNYVKQKAVEGIGTRP 222          
BLAST of mRNA_M-pyrifera_M_contig116418.3414.1 vs. uniprot
Match: A0A7Y2DQ18_9ACTN (DNA recombination protein RmuC n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DQ18_9ACTN)

HSP 1 Score: 97.4 bits (241), Expect = 1.210e-20
Identity = 55/96 (57.29%), Postives = 70/96 (72.92%), Query Frame = 1
Query:  271 QVTAMGGELQQVRSLVAQLQKERAQQHGQFVESLEAATRQQKVLAETTQHLREALASPQARGQWGERMAEDVLRAAGMREGLNYRKQRMIEGGTKP 558
            +V+ +  EL+++  LVA LQKERA+Q+GQ    LE A +    L +TT+ L++ALASPQARGQWGERMAEDVLRAAG  EG +YRKQ  + GG  P
Sbjct:   87 EVSNVQNELRRMSDLVAGLQKERAEQNGQLTTGLERAFQATAALTDTTRTLQQALASPQARGQWGERMAEDVLRAAGFLEGTSYRKQVKLAGGGVP 182          
BLAST of mRNA_M-pyrifera_M_contig116418.3414.1 vs. uniprot
Match: A0A7K2B511_9ACTN (DNA recombination protein RmuC n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2B511_9ACTN)

HSP 1 Score: 97.4 bits (241), Expect = 1.390e-20
Identity = 68/191 (35.60%), Postives = 90/191 (47.12%), Query Frame = 1
Query:    7 VVERVVAVAGESFDSRLQTGAAE-------LDHRREAIDLRLNGTHQRIDEQLGSVVASLQAKVDEVDKIVXXXXXXXXXXXXXXXXXXXXXXXHQVTAMGGELQQVRSLVAQLQKERAQQHGQFVESLEAATRQQKVLAETTQHLREALASPQARGQWGERMAEDVLRAAGMREGLNYRKQRMIEGGTKP 558
            +VE+VV V G++F + LQTG AE       L   R+  D +      R++E+L  +                                                   R LVA+LQK+RA QH    ESL  A  QQ  L  +TQ L + L +PQARGQWGERMA+D+LR+AG+ EG+NYRKQ     GT+P
Sbjct:   44 LVEQVVRVTGQAFQTHLQTGRAEIRAGHAELSRERDVFDTKWEPLVARVNEELSGI---------------------------------------------------RGLVAELQKDRAAQHEGLTESLRNAADQQNRLLASTQRLNDILGNPQARGQWGERMADDILRSAGLIEGVNYRKQLTTSAGTRP 183          
BLAST of mRNA_M-pyrifera_M_contig116418.3414.1 vs. uniprot
Match: A0A6J7ATX2_9ZZZZ (Unannotated protein n=3 Tax=root TaxID=1 RepID=A0A6J7ATX2_9ZZZZ)

HSP 1 Score: 95.5 bits (236), Expect = 8.780e-20
Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 1
Query:  283 MGGELQQVRSLVAQLQKERAQQHGQFVESLEAATRQQKVLAETTQHLREALASPQARGQWGERMAEDVLRAAGMREGLNYRKQRMIEGGTKP 558
            + GEL++V  L+AQLQ++RA QHG+ +   E       +L  TTQ LR+ALASP++RGQWGERMAEDVLRAAG  EG+N+R+Q     G +P
Sbjct:  109 ISGELKRVTDLMAQLQRDRAHQHGEMLSRFEHTANVATILQNTTQSLRDALASPKSRGQWGERMAEDVLRAAGFVEGVNFRQQATSTAGKRP 200          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116418.3414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E8L9L8_9ACTN3.090e-5774.73Uncharacterized protein n=6 Tax=Acidimicrobiaceae ... [more]
A0A358A4A0_9ACTN4.800e-5673.12DNA recombination protein RmuC n=2 Tax=Acidimicrob... [more]
A0A3M2G4S8_ACTSX9.440e-3248.77DNA recombination protein RmuC n=1 Tax=Actinomyces... [more]
A0A7V9GES5_9ACTN3.460e-2359.38DNA recombination protein RmuC (Fragment) n=1 Tax=... [more]
A0A349B848_9ACTN9.550e-2361.46Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A6G0A542_9ACTN2.570e-2247.85DNA recombination protein RmuC n=2 Tax=Bacteria Ta... [more]
A0A496Y8L6_9DELT9.300e-2136.36DNA recombination protein RmuC n=3 Tax=Deltaproteo... [more]
A0A7Y2DQ18_9ACTN1.210e-2057.29DNA recombination protein RmuC n=1 Tax=Acidimicrob... [more]
A0A7K2B511_9ACTN1.390e-2035.60DNA recombination protein RmuC n=1 Tax=Acidimicrob... [more]
A0A6J7ATX2_9ZZZZ8.780e-2054.35Unannotated protein n=3 Tax=root TaxID=1 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig116418contigM-pyrifera_M_contig116418:3..560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score84.0
Seed ortholog evalue8.3e-14
Seed eggNOG ortholog580340.Tlie_0063
KEGG koko:K09760
Hectar predicted targeting categoryother localisation
EggNOG free text desc.PFAM RmuC family
EggNOG OGs3T9XJ@508458,COG1322@1,COG1322@2
COG Functional cat.S
Best tax levelSynergistetes
Best eggNOG OGNA|NA|NA
BRITEko00000
Exons1
Model size558
Cds size558
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815681.7696788-CDS-M-pyrifera_M_contig116418:2..5601622815681.7696788-CDS-M-pyrifera_M_contig116418:2..560Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116418 3..560 +
1692277519.408013-CDS-M-pyrifera_M_contig116418:2..5601692277519.408013-CDS-M-pyrifera_M_contig116418:2..560Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig116418 3..560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig116418.3414.1prot_M-pyrifera_M_contig116418.3414.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig116418 3..560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig116418.3414.1

>prot_M-pyrifera_M_contig116418.3414.1 ID=prot_M-pyrifera_M_contig116418.3414.1|Name=mRNA_M-pyrifera_M_contig116418.3414.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=186bp
EGVVERVVAVAGESFDSRLQTGAAELDHRREAIDLRLNGTHQRIDEQLGS
VVASLQAKVDEVDKIVAERVGGLSETMDARVGGMSKSLGHQVTAMGGELQ
QVRSLVAQLQKERAQQHGQFVESLEAATRQQKVLAETTQHLREALASPQA
RGQWGERMAEDVLRAAGMREGLNYRKQRMIEGGTKP
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mRNA from alignment at M-pyrifera_M_contig116418:3..560+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig116418.3414.1 ID=mRNA_M-pyrifera_M_contig116418.3414.1|Name=mRNA_M-pyrifera_M_contig116418.3414.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig116418:3..560+ (Macrocystis pyrifera P11B4 male)
GAGGGTGTGGTCGAGCGGGTCGTCGCCGTCGCCGGTGAGAGTTTCGACAG TCGCCTCCAGACCGGCGCGGCCGAACTCGACCATCGTCGTGAGGCGATCG ACTTGCGGCTCAACGGCACCCATCAGCGCATCGACGAACAGCTCGGGTCG GTGGTCGCGTCGTTGCAGGCCAAGGTCGACGAGGTCGACAAGATCGTCGC CGAGCGGGTCGGCGGCCTGTCCGAGACCATGGATGCCCGGGTCGGTGGCA TGTCCAAGTCACTCGGCCACCAGGTCACGGCGATGGGCGGCGAGCTCCAG CAGGTCCGCTCGCTCGTGGCCCAACTCCAGAAGGAACGAGCCCAGCAACA CGGCCAGTTCGTCGAGAGTCTCGAGGCGGCGACTCGCCAGCAGAAGGTGT TGGCCGAGACCACCCAGCATCTGCGCGAGGCGCTGGCCAGCCCCCAGGCT CGCGGCCAGTGGGGCGAACGCATGGCCGAAGACGTGCTTCGTGCCGCGGG CATGCGCGAGGGCCTCAACTATCGCAAGCAGCGCATGATCGAGGGCGGCA CGAAGCCC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig116418:3..560+

>mRNA_M-pyrifera_M_contig116418.3414.1 ID=mRNA_M-pyrifera_M_contig116418.3414.1|Name=mRNA_M-pyrifera_M_contig116418.3414.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1116bp|location=Sequence derived from alignment at M-pyrifera_M_contig116418:3..560+ (Macrocystis pyrifera P11B4 male)
GAGGGTGTGGTCGAGCGGGTCGTCGCCGTCGCCGGTGAGAGTTTCGACAG
TCGCCTCCAGACCGGCGCGGCCGAACTCGACCATCGTCGTGAGGCGATCG
ACTTGCGGCTCAACGGCACCCATCAGCGCATCGACGAACAGCTCGGGTCG
GTGGTCGCGTCGTTGCAGGCCAAGGTCGACGAGGTCGACAAGATCGTCGC
CGAGCGGGTCGGCGGCCTGTCCGAGACCATGGATGCCCGGGTCGGTGGCA
TGTCCAAGTCACTCGGCCACCAGGTCACGGCGATGGGCGGCGAGCTCCAG
CAGGTCCGCTCGCTCGTGGCCCAACTCCAGAAGGAACGAGCCCAGCAACA
CGGCCAGTTCGTCGAGAGTCTCGAGGCGGCGACTCGCCAGCAGAAGGTGT
TGGCCGAGACCACCCAGCATCTGCGCGAGGCGCTGGCCAGCCCCCAGGCT
CGCGGCCAGTGGGGCGAACGCATGGCCGAAGACGTGCTTCGTGCCGCGGG
CATGCGCGAGGGCCTCAACTATCGCAAGCAGCGCATGATCGAGGGCGGCA
CGAAGCCCGAGGGTGTGGTCGAGCGGGTCGTCGCCGTCGCCGGTGAGAGT
TTCGACAGTCGCCTCCAGACCGGCGCGGCCGAACTCGACCATCGTCGTGA
GGCGATCGACTTGCGGCTCAACGGCACCCATCAGCGCATCGACGAACAGC
TCGGGTCGGTGGTCGCGTCGTTGCAGGCCAAGGTCGACGAGGTCGACAAG
ATCGTCGCCGAGCGGGTCGGCGGCCTGTCCGAGACCATGGATGCCCGGGT
CGGTGGCATGTCCAAGTCACTCGGCCACCAGGTCACGGCGATGGGCGGCG
AGCTCCAGCAGGTCCGCTCGCTCGTGGCCCAACTCCAGAAGGAACGAGCC
CAGCAACACGGCCAGTTCGTCGAGAGTCTCGAGGCGGCGACTCGCCAGCA
GAAGGTGTTGGCCGAGACCACCCAGCATCTGCGCGAGGCGCTGGCCAGCC
CCCAGGCTCGCGGCCAGTGGGGCGAACGCATGGCCGAAGACGTGCTTCGT
GCCGCGGGCATGCGCGAGGGCCTCAACTATCGCAAGCAGCGCATGATCGA
GGGCGGCACGAAGCCC
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