mRNA_M-pyrifera_M_contig116418.3414.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig116418.3414.1 vs. uniprot
Match: A0A2E8L9L8_9ACTN (Uncharacterized protein n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8L9L8_9ACTN) HSP 1 Score: 194 bits (494), Expect = 3.090e-57 Identity = 139/186 (74.73%), Postives = 149/186 (80.11%), Query Frame = 1
Query: 1 EGVVERVVAVAGESFDSRLQTGAAELDHRREAIDLRLNGTHQRIDEQLGSVVASLQAKVDEVDKIVXXXXXXXXXXXXXXXXXXXXXXXHQVTAMGGELQQVRSLVAQLQKERAQQHGQFVESLEAATRQQKVLAETTQHLREALASPQARGQWGERMAEDVLRAAGMREGLNYRKQRMIEGGTKP 558
+GVVERVV+VAGESFDSRLQTG AEL+HRR+AID L G VV SL XXXXXXXXXXXXXXXXXXXXXXX G EL Q+R+LV QLQKERAQQHGQFVESLEAATRQQ+VLAETTQHLREALASPQARGQWGERMAEDVLR+AGMREG+NYRKQR IEGGT+P
Sbjct: 40 DGVVERVVSVAGESFDSRLQTGTAELEHRRQAIDDHLEG-----------VVKSLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTELTQLRNLVGQLQKERAQQHGQFVESLEAATRQQQVLAETTQHLREALASPQARGQWGERMAEDVLRSAGMREGINYRKQRAIEGGTRP 214
BLAST of mRNA_M-pyrifera_M_contig116418.3414.1 vs. uniprot
Match: A0A358A4A0_9ACTN (DNA recombination protein RmuC n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358A4A0_9ACTN) HSP 1 Score: 191 bits (486), Expect = 4.800e-56 Identity = 136/186 (73.12%), Postives = 149/186 (80.11%), Query Frame = 1
Query: 1 EGVVERVVAVAGESFDSRLQTGAAELDHRREAIDLRLNGTHQRIDEQLGSVVASLQAKVDEVDKIVXXXXXXXXXXXXXXXXXXXXXXXHQVTAMGGELQQVRSLVAQLQKERAQQHGQFVESLEAATRQQKVLAETTQHLREALASPQARGQWGERMAEDVLRAAGMREGLNYRKQRMIEGGTKP 558
+GVVERVV VAGESFDSRLQTG AELDHRR+AID + L +VV SL K+ XXXXXXXXXXXXXXXXXXXXXXX EL Q+R+LV QLQKERA+QHGQFV+SLEAATRQQ+VLAETTQHLR ALASPQARGQWGERMAEDVLR+AGMREG+NYRKQR IEGGT+P
Sbjct: 40 DGVVERVVNVAGESFDSRLQTGTAELDHRRQAID-----------DHLEAVVTSLAEKIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTELTQLRNLVGQLQKERAEQHGQFVKSLEAATRQQQVLAETTQHLRNALASPQARGQWGERMAEDVLRSAGMREGINYRKQRAIEGGTRP 214
BLAST of mRNA_M-pyrifera_M_contig116418.3414.1 vs. uniprot
Match: A0A3M2G4S8_ACTSX (DNA recombination protein RmuC n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2G4S8_ACTSX) HSP 1 Score: 127 bits (319), Expect = 9.440e-32 Identity = 79/162 (48.77%), Postives = 97/162 (59.88%), Query Frame = 1
Query: 82 HRREAIDLRLNGTHQRID---EQLGSVVASLQAKVDEVDKIVXXXXXXXXXXXXXXXXXXXXXXXHQVTAMGGELQQVRSLVAQLQKERAQQHGQFVESLEAATRQQKVLAETTQHLREALASPQARGQWGERMAEDVLRAAGMREGLNYRKQRMIEGGTKP 558
HRR A D H +D E++ + A L+ D VDK+V QV + EL QVR LVA+LQKE+ +Q GQ V L A T QQKVLAETTQ LREALA+PQ RGQWGERMA+DVLRAAG+RE +NY +Q+ + GGT+P
Sbjct: 35 HRRAAED------HSGVDRALERIERLDAELRRTFDAVDKLVETRVGGLTEVVGEKVTGMSSALDQQVGTINAELAQVRRLVAELQKEKERQSGQLVAGLRAVTEQQKVLAETTQSLREALANPQVRGQWGERMADDVLRAAGLRENVNYLRQQTLPGGTRP 190
BLAST of mRNA_M-pyrifera_M_contig116418.3414.1 vs. uniprot
Match: A0A7V9GES5_9ACTN (DNA recombination protein RmuC (Fragment) n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7V9GES5_9ACTN) HSP 1 Score: 102 bits (255), Expect = 3.460e-23 Identity = 57/96 (59.38%), Postives = 68/96 (70.83%), Query Frame = 1
Query: 271 QVTAMGGELQQVRSLVAQLQKERAQQHGQFVESLEAATRQQKVLAETTQHLREALASPQARGQWGERMAEDVLRAAGMREGLNYRKQRMIEGGTKP 558
Q+T M L+QV LV LQ +RA+QHG+ V + A KVLA TT+ L ALASPQARGQWGERMAEDVLRAAG EG+NY KQR + G++P
Sbjct: 98 QMTDMAAHLRQVGELVGSLQADRARQHGELVTRISEAQEVTKVLAGTTEGLHRALASPQARGQWGERMAEDVLRAAGFVEGVNYAKQRTLPDGSRP 193
BLAST of mRNA_M-pyrifera_M_contig116418.3414.1 vs. uniprot
Match: A0A349B848_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B848_9ACTN) HSP 1 Score: 103 bits (257), Expect = 9.550e-23 Identity = 59/96 (61.46%), Postives = 69/96 (71.88%), Query Frame = 1
Query: 271 QVTAMGGELQQVRSLVAQLQKERAQQHGQFVESLEAATRQQKVLAETTQHLREALASPQARGQWGERMAEDVLRAAGMREGLNYRKQRMIEGGTKP 558
QVT + L + LV LQKERA+Q G V LE TR Q+ LA+ T LR+ALASP+ RGQWGERMAEDVLRAAG REG++YR+Q IEGGT P
Sbjct: 100 QVTHIADALGTLGGLVQSLQKERAEQTGSLVAQLEHVTRTQQSLAQHTDQLRQALASPKQRGQWGERMAEDVLRAAGFREGVSYRRQTAIEGGTIP 195
BLAST of mRNA_M-pyrifera_M_contig116418.3414.1 vs. uniprot
Match: A0A6G0A542_9ACTN (DNA recombination protein RmuC n=2 Tax=Bacteria TaxID=2 RepID=A0A6G0A542_9ACTN) HSP 1 Score: 102 bits (254), Expect = 2.570e-22 Identity = 89/186 (47.85%), Postives = 114/186 (61.29%), Query Frame = 1
Query: 1 EGVVERVVAVAGESFDSRLQTGAAELDHRREAIDLRLNGTHQRIDEQLGSVVASLQAKVDEVDKIVXXXXXXXXXXXXXXXXXXXXXXXHQVTAMGGELQQVRSLVAQLQKERAQQHGQFVESLEAATRQQKVLAETTQHLREALASPQARGQWGERMAEDVLRAAGMREGLNYRKQRMIEGGTKP 558
+ V++RV A AG+ D L +G+ +L+ A LR +Q ++ A Q D XXXXXXXXXXXXXXX XXXX M GEL +V LVA +Q ERA+QHG+ V +LE A + Q LA+T Q LREALA+P+ARG WGER AEDVLR AG EG++Y ++R + GT P
Sbjct: 37 QAVIDRVYAAAGDKLDDHLSSGSRQLELL--AHSLR---------QQFEAIQAETQRSSDLRXXXXXXXXXXXXXXXXXXXVHREXXXXXXXXVMKGELHRVSELVADMQSERARQHGEVVATLEEAAKAQAALADTAQGLREALANPKARGNWGERTAEDVLRLAGFVEGVSYHRRRQLPCGTVP 211
BLAST of mRNA_M-pyrifera_M_contig116418.3414.1 vs. uniprot
Match: A0A496Y8L6_9DELT (DNA recombination protein RmuC n=3 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A496Y8L6_9DELT) HSP 1 Score: 98.2 bits (243), Expect = 9.300e-21 Identity = 68/187 (36.36%), Postives = 98/187 (52.41%), Query Frame = 1
Query: 1 EGVVERVVAVAGESFDSRLQTGAAELDHRREAIDLRLNGTHQRIDEQLGSVVASLQAKVDEVDKIVXXXXXXXXXXXXXXXXXXXXXXXHQVTAMGGELQQVRSLVAQLQKERAQQHGQFVESLEAATRQQKVLAETTQHLREALASPQARGQWGERMAEDVLRAAGMREGLNYRKQRMIEG-GTKP 558
E +R + D + G+ LD +++ + L R+D + S + L AK +D+ Q+ MG ELQ+V +LV L+K+R Q+ G+ L++A++Q L ETT LREAL+S Q+RGQWGERMAEDVLR AG E +NY KQ+ +EG GT+P
Sbjct: 62 ESETQRKAGMEAVLADVKASFGSLSLDALQKSTEEFLKLAKSRLDAERESSLHDLDAKKGLIDQ--------------------------QLARMGTELQKVSTLVQDLEKDRVQKFGELTSQLKSASQQTNTLIETTNTLREALSSTQSRGQWGERMAEDVLRLAGFIENVNYVKQKAVEGIGTRP 222
BLAST of mRNA_M-pyrifera_M_contig116418.3414.1 vs. uniprot
Match: A0A7Y2DQ18_9ACTN (DNA recombination protein RmuC n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DQ18_9ACTN) HSP 1 Score: 97.4 bits (241), Expect = 1.210e-20 Identity = 55/96 (57.29%), Postives = 70/96 (72.92%), Query Frame = 1
Query: 271 QVTAMGGELQQVRSLVAQLQKERAQQHGQFVESLEAATRQQKVLAETTQHLREALASPQARGQWGERMAEDVLRAAGMREGLNYRKQRMIEGGTKP 558
+V+ + EL+++ LVA LQKERA+Q+GQ LE A + L +TT+ L++ALASPQARGQWGERMAEDVLRAAG EG +YRKQ + GG P
Sbjct: 87 EVSNVQNELRRMSDLVAGLQKERAEQNGQLTTGLERAFQATAALTDTTRTLQQALASPQARGQWGERMAEDVLRAAGFLEGTSYRKQVKLAGGGVP 182
BLAST of mRNA_M-pyrifera_M_contig116418.3414.1 vs. uniprot
Match: A0A7K2B511_9ACTN (DNA recombination protein RmuC n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7K2B511_9ACTN) HSP 1 Score: 97.4 bits (241), Expect = 1.390e-20 Identity = 68/191 (35.60%), Postives = 90/191 (47.12%), Query Frame = 1
Query: 7 VVERVVAVAGESFDSRLQTGAAE-------LDHRREAIDLRLNGTHQRIDEQLGSVVASLQAKVDEVDKIVXXXXXXXXXXXXXXXXXXXXXXXHQVTAMGGELQQVRSLVAQLQKERAQQHGQFVESLEAATRQQKVLAETTQHLREALASPQARGQWGERMAEDVLRAAGMREGLNYRKQRMIEGGTKP 558
+VE+VV V G++F + LQTG AE L R+ D + R++E+L + R LVA+LQK+RA QH ESL A QQ L +TQ L + L +PQARGQWGERMA+D+LR+AG+ EG+NYRKQ GT+P
Sbjct: 44 LVEQVVRVTGQAFQTHLQTGRAEIRAGHAELSRERDVFDTKWEPLVARVNEELSGI---------------------------------------------------RGLVAELQKDRAAQHEGLTESLRNAADQQNRLLASTQRLNDILGNPQARGQWGERMADDILRSAGLIEGVNYRKQLTTSAGTRP 183
BLAST of mRNA_M-pyrifera_M_contig116418.3414.1 vs. uniprot
Match: A0A6J7ATX2_9ZZZZ (Unannotated protein n=3 Tax=root TaxID=1 RepID=A0A6J7ATX2_9ZZZZ) HSP 1 Score: 95.5 bits (236), Expect = 8.780e-20 Identity = 50/92 (54.35%), Postives = 66/92 (71.74%), Query Frame = 1
Query: 283 MGGELQQVRSLVAQLQKERAQQHGQFVESLEAATRQQKVLAETTQHLREALASPQARGQWGERMAEDVLRAAGMREGLNYRKQRMIEGGTKP 558
+ GEL++V L+AQLQ++RA QHG+ + E +L TTQ LR+ALASP++RGQWGERMAEDVLRAAG EG+N+R+Q G +P
Sbjct: 109 ISGELKRVTDLMAQLQRDRAHQHGEMLSRFEHTANVATILQNTTQSLRDALASPKSRGQWGERMAEDVLRAAGFVEGVNFRQQATSTAGKRP 200 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig116418.3414.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig116418.3414.1 >prot_M-pyrifera_M_contig116418.3414.1 ID=prot_M-pyrifera_M_contig116418.3414.1|Name=mRNA_M-pyrifera_M_contig116418.3414.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=186bp EGVVERVVAVAGESFDSRLQTGAAELDHRREAIDLRLNGTHQRIDEQLGSback to top mRNA from alignment at M-pyrifera_M_contig116418:3..560+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig116418.3414.1 ID=mRNA_M-pyrifera_M_contig116418.3414.1|Name=mRNA_M-pyrifera_M_contig116418.3414.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig116418:3..560+ (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig116418:3..560+ >mRNA_M-pyrifera_M_contig116418.3414.1 ID=mRNA_M-pyrifera_M_contig116418.3414.1|Name=mRNA_M-pyrifera_M_contig116418.3414.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1116bp|location=Sequence derived from alignment at M-pyrifera_M_contig116418:3..560+ (Macrocystis pyrifera P11B4 male)back to top |