mRNA_M-pyrifera_M_contig115889.3302.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115889.3302.1
Unique NamemRNA_M-pyrifera_M_contig115889.3302.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115889.3302.1 vs. uniprot
Match: A0A2E7KKZ1_9PLAN (Cysteine--tRNA ligase n=8 Tax=Gimesia TaxID=1649453 RepID=A0A2E7KKZ1_9PLAN)

HSP 1 Score: 398 bits (1022), Expect = 1.070e-135
Identity = 187/187 (100.00%), Postives = 187/187 (100.00%), Query Frame = 1
Query:    1 RAAEKNISVEKLAAEMTQDYFDNLETMGIDTITDFPKATDYIDAMLEIIQTLIDQGNAYPLDGDVYFSAESDNNYGCLSGRKIEEMIAGTRVEANDKKKNPADFALWKKSRPGEPAWDSPWGPGRPGWHIECSAMSRKLLGDSFDIHGGGLDLMFPHHENERAQSECCTGKTYVRYWVHNGLMQASD 561
            RAAEKNISVEKLAAEMTQDYFDNLETMGIDTITDFPKATDYIDAMLEIIQTLIDQGNAYPLDGDVYFSAESDNNYGCLSGRKIEEMIAGTRVEANDKKKNPADFALWKKSRPGEPAWDSPWGPGRPGWHIECSAMSRKLLGDSFDIHGGGLDLMFPHHENERAQSECCTGKTYVRYWVHNGLMQASD
Sbjct:   78 RAAEKNISVEKLAAEMTQDYFDNLETMGIDTITDFPKATDYIDAMLEIIQTLIDQGNAYPLDGDVYFSAESDNNYGCLSGRKIEEMIAGTRVEANDKKKNPADFALWKKSRPGEPAWDSPWGPGRPGWHIECSAMSRKLLGDSFDIHGGGLDLMFPHHENERAQSECCTGKTYVRYWVHNGLMQASD 264          
BLAST of mRNA_M-pyrifera_M_contig115889.3302.1 vs. uniprot
Match: A6C6Z0_9PLAN (Cysteine--tRNA ligase n=13 Tax=Planctomycetaceae TaxID=126 RepID=A6C6Z0_9PLAN)

HSP 1 Score: 374 bits (959), Expect = 3.700e-126
Identity = 174/187 (93.05%), Postives = 181/187 (96.79%), Query Frame = 1
Query:    1 RAAEKNISVEKLAAEMTQDYFDNLETMGIDTITDFPKATDYIDAMLEIIQTLIDQGNAYPLDGDVYFSAESDNNYGCLSGRKIEEMIAGTRVEANDKKKNPADFALWKKSRPGEPAWDSPWGPGRPGWHIECSAMSRKLLGDSFDIHGGGLDLMFPHHENERAQSECCTGKTYVRYWVHNGLMQASD 561
            +AAE NISVEKLAA+MTQDYFDNLETMG+DTITDFPKATDYI+AM EIIQ+LID+  AYPLDGDVYFSA +DN YGCLSGRKIEEMIAGTRVEANDKKKNPADFALWKKSRPGEPAWDSPWGPGRPGWHIECSAMSRKLLGDSFDIHGGGLDLMFPHHENERAQSECCTGKTYVRYWVHNGLMQASD
Sbjct:   78 KAAELNISVEKLAADMTQDYFDNLETMGVDTITDFPKATDYIEAMQEIIQSLIDKDFAYPLDGDVYFSAAADNKYGCLSGRKIEEMIAGTRVEANDKKKNPADFALWKKSRPGEPAWDSPWGPGRPGWHIECSAMSRKLLGDSFDIHGGGLDLMFPHHENERAQSECCTGKTYVRYWVHNGLMQASD 264          
BLAST of mRNA_M-pyrifera_M_contig115889.3302.1 vs. uniprot
Match: A0A177RB13_9PLAN (Cysteine--tRNA ligase n=1 Tax=Planctomyces sp. SCGC AG-212-M04 TaxID=1799657 RepID=A0A177RB13_9PLAN)

HSP 1 Score: 304 bits (779), Expect = 6.080e-99
Identity = 138/185 (74.59%), Postives = 160/185 (86.49%), Query Frame = 1
Query:    1 RAAEKNISVEKLAAEMTQDYFDNLETMGIDTITDFPKATDYIDAMLEIIQTLIDQGNAYPLDGDVYFSAESDNNYGCLSGRKIEEMIAGTRVEANDKKKNPADFALWKKSRPGEPAWDSPWGPGRPGWHIECSAMSRKLLGDSFDIHGGGLDLMFPHHENERAQSECCTGKTYVRYWVHNGLMQA 555
            RA EK  +V+ LA +MT DYFDNL+ MG+D+I  FP ATD+I  MLE+I TLI++G+AYPL+GDVYF+ ESD +YG LS R I +M+AGTRVEANDKK+NPADFALWK S+PGEPAWDSPWGPGRPGWHIECSAMS KLLGDS DIHGGGLDLMFPHHENE AQSECC+GK + RYW+HNGLMQ+
Sbjct:   78 RAQEKGTTVKALAEQMTADYFDNLKLMGVDSIDKFPYATDHIGDMLEMIGTLIEKGHAYPLNGDVYFAVESDPDYGKLSNRSIAQMLAGTRVEANDKKRNPADFALWKSSKPGEPAWDSPWGPGRPGWHIECSAMSAKLLGDSIDIHGGGLDLMFPHHENELAQSECCSGKPFARYWLHNGLMQS 262          
BLAST of mRNA_M-pyrifera_M_contig115889.3302.1 vs. uniprot
Match: A0A3L7QQ37_9BACT (Cysteine--tRNA ligase n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7QQ37_9BACT)

HSP 1 Score: 302 bits (773), Expect = 6.240e-98
Identity = 134/185 (72.43%), Postives = 162/185 (87.57%), Query Frame = 1
Query:    1 RAAEKNISVEKLAAEMTQDYFDNLETMGIDTITDFPKATDYIDAMLEIIQTLIDQGNAYPLDGDVYFSAESDNNYGCLSGRKIEEMIAGTRVEANDKKKNPADFALWKKSRPGEPAWDSPWGPGRPGWHIECSAMSRKLLGDSFDIHGGGLDLMFPHHENERAQSECCTGKTYVRYWVHNGLMQA 555
            +AAEK  +V+ LA +MT DYFDNL+ MG+D+I  FP ATD+I+ MLE+IQ LI++G+AYPL+GDVYF+ E+D++YG LS R I +M+AGTRVEAND K+NPADFALWK S+PGEPAWDSPWGPGRPGWHIECSAMS K+LG+S DIHGGGLDLMFPHHENE AQSECC+GK + RYW+HNGLMQ+
Sbjct:   78 KAAEKGTTVKALAEQMTADYFDNLKLMGVDSIDHFPYATDHINDMLEMIQKLIEKGHAYPLNGDVYFAVETDDDYGKLSNRSISQMLAGTRVEANDTKRNPADFALWKSSKPGEPAWDSPWGPGRPGWHIECSAMSAKILGESIDIHGGGLDLMFPHHENELAQSECCSGKPFARYWLHNGLMQS 262          
BLAST of mRNA_M-pyrifera_M_contig115889.3302.1 vs. uniprot
Match: A0A517SKZ5_9PLAN (Cysteine--tRNA ligase n=2 Tax=Caulifigura coniformis TaxID=2527983 RepID=A0A517SKZ5_9PLAN)

HSP 1 Score: 301 bits (770), Expect = 1.920e-97
Identity = 134/185 (72.43%), Postives = 159/185 (85.95%), Query Frame = 1
Query:    1 RAAEKNISVEKLAAEMTQDYFDNLETMGIDTITDFPKATDYIDAMLEIIQTLIDQGNAYPLDGDVYFSAESDNNYGCLSGRKIEEMIAGTRVEANDKKKNPADFALWKKSRPGEPAWDSPWGPGRPGWHIECSAMSRKLLGDSFDIHGGGLDLMFPHHENERAQSECCTGKTYVRYWVHNGLMQA 555
            +A EK  +V+ LA +MT DYFDNL+ MG+D++  FP ATD+I  MLE+I  L+++G+AYPL+GDVYFS ESD +YG LS R I +M+AGTRVEANDKK+NPADFALWK S+PGEPAWDSPWGPGRPGWHIECSAMS K+LGDS DIHGGGLDLMFPHHENE AQSECC+GK + RYW+HNGLMQ+
Sbjct:   90 KAQEKGTTVKALAEQMTTDYFDNLKLMGVDSVDQFPYATDHIGDMLEMIGRLVEKGHAYPLNGDVYFSVESDPDYGKLSNRSIAQMLAGTRVEANDKKRNPADFALWKSSKPGEPAWDSPWGPGRPGWHIECSAMSAKILGDSIDIHGGGLDLMFPHHENELAQSECCSGKPFARYWLHNGLMQS 274          
BLAST of mRNA_M-pyrifera_M_contig115889.3302.1 vs. uniprot
Match: A0A142WRV1_9PLAN (Cysteine--tRNA ligase n=1 Tax=Planctomyces sp. SH-PL14 TaxID=1632864 RepID=A0A142WRV1_9PLAN)

HSP 1 Score: 299 bits (766), Expect = 5.060e-97
Identity = 134/185 (72.43%), Postives = 160/185 (86.49%), Query Frame = 1
Query:    1 RAAEKNISVEKLAAEMTQDYFDNLETMGIDTITDFPKATDYIDAMLEIIQTLIDQGNAYPLDGDVYFSAESDNNYGCLSGRKIEEMIAGTRVEANDKKKNPADFALWKKSRPGEPAWDSPWGPGRPGWHIECSAMSRKLLGDSFDIHGGGLDLMFPHHENERAQSECCTGKTYVRYWVHNGLMQA 555
            +A EK ++V+ LA +MT DYFDNL+ MG+D+I  FP ATD+I  ML++I  LI++G+AYPL GDVYFS ESD++YG LS R +E+M+AGTRVEAND+KKNPADFALWK S+ GEPAWDSPWGPGRPGWHIECSAMS K+LGDS DIHGGGLDLMFPHHENE AQSECC+GK + RYW+HNGLMQ+
Sbjct:   78 KANEKGMTVKALAEQMTADYFDNLKLMGVDSIDHFPYATDHIQDMLDMITRLIEKGHAYPLGGDVYFSVESDDDYGKLSNRSLEQMLAGTRVEANDRKKNPADFALWKGSKAGEPAWDSPWGPGRPGWHIECSAMSAKILGDSIDIHGGGLDLMFPHHENELAQSECCSGKPFARYWLHNGLMQS 262          
BLAST of mRNA_M-pyrifera_M_contig115889.3302.1 vs. uniprot
Match: A0A1I3AT31_9PLAN (Cysteine--tRNA ligase n=1 Tax=Planctomicrobium piriforme TaxID=1576369 RepID=A0A1I3AT31_9PLAN)

HSP 1 Score: 299 bits (765), Expect = 6.960e-97
Identity = 137/185 (74.05%), Postives = 159/185 (85.95%), Query Frame = 1
Query:    1 RAAEKNISVEKLAAEMTQDYFDNLETMGIDTITDFPKATDYIDAMLEIIQTLIDQGNAYPLDGDVYFSAESDNNYGCLSGRKIEEMIAGTRVEANDKKKNPADFALWKKSRPGEPAWDSPWGPGRPGWHIECSAMSRKLLGDSFDIHGGGLDLMFPHHENERAQSECCTGKTYVRYWVHNGLMQA 555
            +A EK + V+ LA +MT+DYFDNL+ MGIDTI  FP ATDYI AM E+IQ LID+G+AY L+GDVYFS   D +YG LSGR +E+M+AGTRVEAND+K+NPADFALWK S+ GEPAWDSPWGPGRPGWHIECSAMS KLLGDS DIHGGGLDLMFPHHENE AQSE  +GKT+V+YW+HNGLMQ+
Sbjct:   78 KAKEKGMEVKALAEQMTEDYFDNLKLMGIDTIDHFPYATDYIGAMQEMIQGLIDKGSAYELNGDVYFSVTHDADYGKLSGRSVEQMLAGTRVEANDRKQNPADFALWKSSKAGEPAWDSPWGPGRPGWHIECSAMSSKLLGDSIDIHGGGLDLMFPHHENELAQSESASGKTFVKYWLHNGLMQS 262          
BLAST of mRNA_M-pyrifera_M_contig115889.3302.1 vs. uniprot
Match: UPI0019888568 (Cysteine--tRNA ligase n=1 Tax=Candidatus Saccharimonas sp. TaxID=1917697 RepID=UPI0019888568)

HSP 1 Score: 290 bits (742), Expect = 9.860e-97
Identity = 132/186 (70.97%), Postives = 154/186 (82.80%), Query Frame = 1
Query:    1 RAAEKNISVEKLAAEMTQDYFDNLETMGIDTITDFPKATDYIDAMLEIIQTLIDQGNAYPLDGDVYFSAESDNNYGCLSGRKIEEMIAGTRVEANDKKKNPADFALWKKSRPGEPAWDSPWGPGRPGWHIECSAMSRKLLGDSFDIHGGGLDLMFPHHENERAQSECCTGKTYVRYWVHNGLMQAS 558
            RA E+ ++VE LA EMTQDYFDNL+TM +D I  FP AT +I  M EII TLI++G AYPLDGDVYF+   D +YG LSGR +E+M+AGTR E +  K++PADFALWK S+PGEPAW SPWGPGRPGWHIECSAM++K+LGDS DIHGGGLDLMFPHHENE AQSE CTGK + RYW+HNGLMQAS
Sbjct:   78 RANERKMTVEALAKEMTQDYFDNLKTMAVDGIDHFPYATQHIQEMQEIIATLIEKGYAYPLDGDVYFNCTKDEDYGKLSGRSLEQMLAGTRAETHGGKQHPADFALWKGSKPGEPAWPSPWGPGRPGWHIECSAMAKKILGDSIDIHGGGLDLMFPHHENELAQSESCTGKPFARYWMHNGLMQAS 263          
BLAST of mRNA_M-pyrifera_M_contig115889.3302.1 vs. uniprot
Match: A0A518CK04_9PLAN (Cysteine--tRNA ligase n=2 Tax=Planctomycetaceae TaxID=126 RepID=A0A518CK04_9PLAN)

HSP 1 Score: 297 bits (761), Expect = 2.630e-96
Identity = 132/187 (70.59%), Postives = 160/187 (85.56%), Query Frame = 1
Query:    1 RAAEKNISVEKLAAEMTQDYFDNLETMGIDTITDFPKATDYIDAMLEIIQTLIDQGNAYPLDGDVYFSAESDNNYGCLSGRKIEEMIAGTRVEANDKKKNPADFALWKKSRPGEPAWDSPWGPGRPGWHIECSAMSRKLLGDSFDIHGGGLDLMFPHHENERAQSECCTGKTYVRYWVHNGLMQASD 561
            +A E   +VEKLA EMTQDYFDNLETMG+D++  FP AT++I  ML++I  L+D+G+AYPLDGDVYF+ E D++YG LS R I+EM+AGTRVE+ D+K+NPADFALWKKS+P EPAW+SPWG GRPGWHIECSAMS+K LG++ DIHGGGLDLMFPHHENE AQSECCTGK + +YW+HNGLMQA  
Sbjct:   78 KANELGTTVEKLAKEMTQDYFDNLETMGVDSVDLFPYATEHIQEMLDMISDLVDKGHAYPLDGDVYFAVEQDDDYGKLSRRNIDEMLAGTRVESADQKRNPADFALWKKSKPNEPAWESPWGAGRPGWHIECSAMSKKHLGETLDIHGGGLDLMFPHHENELAQSECCTGKPFTKYWLHNGLMQAGS 264          
BLAST of mRNA_M-pyrifera_M_contig115889.3302.1 vs. uniprot
Match: A0A517ZV15_9PLAN (Cysteine--tRNA ligase n=3 Tax=Symmachiella TaxID=2795780 RepID=A0A517ZV15_9PLAN)

HSP 1 Score: 295 bits (756), Expect = 1.570e-95
Identity = 132/186 (70.97%), Postives = 159/186 (85.48%), Query Frame = 1
Query:    1 RAAEKNISVEKLAAEMTQDYFDNLETMGIDTITDFPKATDYIDAMLEIIQTLIDQGNAYPLDGDVYFSAESDNNYGCLSGRKIEEMIAGTRVEANDKKKNPADFALWKKSRPGEPAWDSPWGPGRPGWHIECSAMSRKLLGDSFDIHGGGLDLMFPHHENERAQSECCTGKTYVRYWVHNGLMQAS 558
            RA E   +VE LA EMTQDY+DNL+TMG++++  FP AT++I  ML+II  LI++  AYPL+GDVYFS ++D +YG LS R ++EM+AGTRVEAND+K+NPADFALWKKS+PGEPAW+SPWGPGRPGWHIECSAMS K LG++ DIHGGGLDLMFPHHENE AQSE CTGK + RYW+HNGLMQAS
Sbjct:   78 RANENGTTVEALAKEMTQDYYDNLKTMGVESVDLFPHATEHIQEMLDIISNLIEKDAAYPLEGDVYFSVDADEDYGKLSRRNVQEMMAGTRVEANDRKRNPADFALWKKSKPGEPAWESPWGPGRPGWHIECSAMSMKYLGETLDIHGGGLDLMFPHHENELAQSESCTGKPFARYWLHNGLMQAS 263          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115889.3302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E7KKZ1_9PLAN1.070e-135100.00Cysteine--tRNA ligase n=8 Tax=Gimesia TaxID=164945... [more]
A6C6Z0_9PLAN3.700e-12693.05Cysteine--tRNA ligase n=13 Tax=Planctomycetaceae T... [more]
A0A177RB13_9PLAN6.080e-9974.59Cysteine--tRNA ligase n=1 Tax=Planctomyces sp. SCG... [more]
A0A3L7QQ37_9BACT6.240e-9872.43Cysteine--tRNA ligase n=1 Tax=Planctomycetes bacte... [more]
A0A517SKZ5_9PLAN1.920e-9772.43Cysteine--tRNA ligase n=2 Tax=Caulifigura coniform... [more]
A0A142WRV1_9PLAN5.060e-9772.43Cysteine--tRNA ligase n=1 Tax=Planctomyces sp. SH-... [more]
A0A1I3AT31_9PLAN6.960e-9774.05Cysteine--tRNA ligase n=1 Tax=Planctomicrobium pir... [more]
UPI00198885689.860e-9770.97Cysteine--tRNA ligase n=1 Tax=Candidatus Saccharim... [more]
A0A518CK04_9PLAN2.630e-9670.59Cysteine--tRNA ligase n=2 Tax=Planctomycetaceae Ta... [more]
A0A517ZV15_9PLAN1.570e-9570.97Cysteine--tRNA ligase n=3 Tax=Symmachiella TaxID=2... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115889contigM-pyrifera_M_contig115889:2..562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score377.9
Seed ortholog evalue2.8e-102
Seed eggNOG ortholog344747.PM8797T_03880
Preferred namecysS
KEGG rclassRC00055,RC00523
KEGG koko:K01883,ko:K15526
KEGG ReactionR03650
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001871,GO:0003674,GO:0003824,GO:0004812,GO:0004817,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006423,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009986,GO:0009987,GO:0010467,GO:0016070,GO:0016874,GO:0016875,GO:0017076,GO:0019538,GO:0019752,GO:0030246,GO:0030247,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0034641,GO:0034645,GO:0034660,GO:0035639,GO:0036094,GO:0043038,GO:0043039,GO:0043043,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0071704,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:0140101,GO:1901265,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:2001065
EggNOG free text desc.Belongs to the class-I aminoacyl-tRNA synthetase family
EggNOG OGs2IX9C@203682,COG0215@1,COG0215@2
EC6.1.1.16,6.3.1.13
COG Functional cat.J
BiGG ReactioniECUMN_1333.ECUMN_0566,iJN746.PP_2905
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons1
Model size561
Cds size561
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815675.5968223-CDS-M-pyrifera_M_contig115889:1..5621622815675.5968223-CDS-M-pyrifera_M_contig115889:1..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115889 2..562 -
1692277516.4885466-CDS-M-pyrifera_M_contig115889:1..5621692277516.4885466-CDS-M-pyrifera_M_contig115889:1..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115889 2..562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115889.3302.1prot_M-pyrifera_M_contig115889.3302.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115889 2..562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115889.3302.1

>prot_M-pyrifera_M_contig115889.3302.1 ID=prot_M-pyrifera_M_contig115889.3302.1|Name=mRNA_M-pyrifera_M_contig115889.3302.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=187bp
RAAEKNISVEKLAAEMTQDYFDNLETMGIDTITDFPKATDYIDAMLEIIQ
TLIDQGNAYPLDGDVYFSAESDNNYGCLSGRKIEEMIAGTRVEANDKKKN
PADFALWKKSRPGEPAWDSPWGPGRPGWHIECSAMSRKLLGDSFDIHGGG
LDLMFPHHENERAQSECCTGKTYVRYWVHNGLMQASD
back to top

mRNA from alignment at M-pyrifera_M_contig115889:2..562-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115889.3302.1 ID=mRNA_M-pyrifera_M_contig115889.3302.1|Name=mRNA_M-pyrifera_M_contig115889.3302.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=561bp|location=Sequence derived from alignment at M-pyrifera_M_contig115889:2..562- (Macrocystis pyrifera P11B4 male)
CGGGCAGCCGAAAAGAACATTTCGGTTGAAAAGCTGGCGGCCGAGATGAC CCAGGATTACTTCGATAACCTGGAAACAATGGGCATTGATACCATCACCG ATTTCCCCAAAGCAACCGACTACATCGACGCGATGCTGGAAATCATCCAG ACGCTGATCGACCAGGGGAACGCTTACCCGCTGGACGGCGATGTCTATTT TTCAGCGGAGTCAGACAACAACTACGGATGCCTGAGTGGTCGGAAGATCG AAGAGATGATTGCCGGCACCCGTGTGGAAGCCAACGACAAGAAAAAGAAT CCGGCTGACTTCGCTCTGTGGAAGAAATCGCGTCCGGGTGAACCGGCGTG GGACAGCCCCTGGGGTCCCGGTCGCCCCGGCTGGCACATCGAATGTTCCG CGATGAGCCGCAAACTGCTGGGTGATTCTTTCGACATTCATGGCGGCGGT CTGGACCTGATGTTTCCCCATCATGAAAACGAACGAGCCCAGTCCGAATG CTGCACCGGTAAGACGTACGTGCGTTACTGGGTGCACAATGGTCTGATGC AGGCCAGCGAT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig115889:2..562-

>mRNA_M-pyrifera_M_contig115889.3302.1 ID=mRNA_M-pyrifera_M_contig115889.3302.1|Name=mRNA_M-pyrifera_M_contig115889.3302.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1122bp|location=Sequence derived from alignment at M-pyrifera_M_contig115889:2..562- (Macrocystis pyrifera P11B4 male)
CGGGCAGCCGAAAAGAACATTTCGGTTGAAAAGCTGGCGGCCGAGATGAC
CCAGGATTACTTCGATAACCTGGAAACAATGGGCATTGATACCATCACCG
ATTTCCCCAAAGCAACCGACTACATCGACGCGATGCTGGAAATCATCCAG
ACGCTGATCGACCAGGGGAACGCTTACCCGCTGGACGGCGATGTCTATTT
TTCAGCGGAGTCAGACAACAACTACGGATGCCTGAGTGGTCGGAAGATCG
AAGAGATGATTGCCGGCACCCGTGTGGAAGCCAACGACAAGAAAAAGAAT
CCGGCTGACTTCGCTCTGTGGAAGAAATCGCGTCCGGGTGAACCGGCGTG
GGACAGCCCCTGGGGTCCCGGTCGCCCCGGCTGGCACATCGAATGTTCCG
CGATGAGCCGCAAACTGCTGGGTGATTCTTTCGACATTCATGGCGGCGGT
CTGGACCTGATGTTTCCCCATCATGAAAACGAACGAGCCCAGTCCGAATG
CTGCACCGGTAAGACGTACGTGCGTTACTGGGTGCACAATGGTCTGATGC
AGGCCAGCGATCGGGCAGCCGAAAAGAACATTTCGGTTGAAAAGCTGGCG
GCCGAGATGACCCAGGATTACTTCGATAACCTGGAAACAATGGGCATTGA
TACCATCACCGATTTCCCCAAAGCAACCGACTACATCGACGCGATGCTGG
AAATCATCCAGACGCTGATCGACCAGGGGAACGCTTACCCGCTGGACGGC
GATGTCTATTTTTCAGCGGAGTCAGACAACAACTACGGATGCCTGAGTGG
TCGGAAGATCGAAGAGATGATTGCCGGCACCCGTGTGGAAGCCAACGACA
AGAAAAAGAATCCGGCTGACTTCGCTCTGTGGAAGAAATCGCGTCCGGGT
GAACCGGCGTGGGACAGCCCCTGGGGTCCCGGTCGCCCCGGCTGGCACAT
CGAATGTTCCGCGATGAGCCGCAAACTGCTGGGTGATTCTTTCGACATTC
ATGGCGGCGGTCTGGACCTGATGTTTCCCCATCATGAAAACGAACGAGCC
CAGTCCGAATGCTGCACCGGTAAGACGTACGTGCGTTACTGGGTGCACAA
TGGTCTGATGCAGGCCAGCGAT
back to top