mRNA_M-pyrifera_M_contig115887.3300.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115887.3300.1
Unique NamemRNA_M-pyrifera_M_contig115887.3300.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115887.3300.1 vs. uniprot
Match: A0A7X6ATV0_9ACTN (UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6ATV0_9ACTN)

HSP 1 Score: 197 bits (500), Expect = 2.500e-59
Identity = 101/146 (69.18%), Postives = 114/146 (78.08%), Query Frame = 1
Query:    1 GSRENRTAAELAFGYRTSALGPDDLVLGARLQLAPGDPAVGRAEMAEIVQWRRDHQPGGQNAGSVFTNPEGDSAGRLIDEAGLKGFRIGTAEVSPKHANFIQADPDGRAADVRAVMDAVVQRVRERTGIELRAETHLVGFVDGD*P 438
            GSR   T  EL FGYR SA+   DLVL ARL+L+PGD   GRAE+AEIVQWRR++QPGGQNAGSVFTNPEGDSAGRLI+ AG KG RIGTAEVS KHANFIQAD  GRAADV +VM  V +RV E+ G+ L  ETHL+GF D + P
Sbjct:  167 GSRRWWTPDELDFGYRRSAITATDLVLAARLELSPGDRDAGRAELAEIVQWRRENQPGGQNAGSVFTNPEGDSAGRLIEAAGAKGLRIGTAEVSAKHANFIQADEGGRAADVLSVMTEVRRRVEEKCGVTLHPETHLLGFGDPEDP 312          
BLAST of mRNA_M-pyrifera_M_contig115887.3300.1 vs. uniprot
Match: A0A358A3T9_9ACTN (UDP-N-acetylmuramate dehydrogenase (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A358A3T9_9ACTN)

HSP 1 Score: 181 bits (458), Expect = 1.220e-54
Identity = 95/146 (65.07%), Postives = 105/146 (71.92%), Query Frame = 1
Query:    1 GSRENRTAAELAFGYRTSALGPDDLVLGARLQLAPGDPAVGRAEMAEIVQWRRDHQPGGQNAGSVFTNPEGDSAGRLIDEAGLKGFRIGTAEVSPKHANFIQADPDGRAADVRAVMDAVVQRVRERTGIELRAETHLVGFVDGD*P 438
            G R    A EL   YR SAL  D+LV+G RL L+ GD   G+AEMAEIVQWRRD+QPGGQNAGSVFTNP+GDSAGRLID AG KG R+GTAEVS KHANFIQAD  G AADV  VM  V   V    G+ L+ ETHLVGF D + P
Sbjct:   48 GERRIVPAEELQLSYRQSALRTDELVVGCRLSLSSGDERKGKAEMAEIVQWRRDNQPGGQNAGSVFTNPDGDSAGRLIDTAGGKGLRVGTAEVSEKHANFIQADEGGTAADVLQVMIEVRTLVEYAHGVVLQPETHLVGFTDDEVP 193          
BLAST of mRNA_M-pyrifera_M_contig115887.3300.1 vs. uniprot
Match: A0A2E8LAP6_9ACTN (UDP-N-acetylenolpyruvoylglucosamine reductase n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8LAP6_9ACTN)

HSP 1 Score: 180 bits (456), Expect = 7.480e-53
Identity = 94/146 (64.38%), Postives = 105/146 (71.92%), Query Frame = 1
Query:    1 GSRENRTAAELAFGYRTSALGPDDLVLGARLQLAPGDPAVGRAEMAEIVQWRRDHQPGGQNAGSVFTNPEGDSAGRLIDEAGLKGFRIGTAEVSPKHANFIQADPDGRAADVRAVMDAVVQRVRERTGIELRAETHLVGFVDGD*P 438
            G R    A EL   YR SAL  D+LV+G RL L+PGD   G+AEMAEIVQWRRD+QPGGQNAGSVFTNP+G+SAGRLID AG KG R+GTAEVS KHANFIQAD  G AADV  VM      V    G+ L+ ETHLVGF D + P
Sbjct:  165 GERRIVPAEELQLSYRHSALRTDELVVGCRLSLSPGDERKGKAEMAEIVQWRRDNQPGGQNAGSVFTNPDGESAGRLIDTAGGKGLRVGTAEVSAKHANFIQADEGGTAADVLRVMIEARTLVEFAHGVVLQPETHLVGFTDDEVP 310          
BLAST of mRNA_M-pyrifera_M_contig115887.3300.1 vs. uniprot
Match: A0A7Y2DS79_9ACTN (UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DS79_9ACTN)

HSP 1 Score: 176 bits (447), Expect = 2.140e-51
Identity = 89/137 (64.96%), Postives = 103/137 (75.18%), Query Frame = 1
Query:   16 RTAAELAFGYRTSALGPDDLVLGARLQLA--PGDPAVGRAEMAEIVQWRRDHQPGGQNAGSVFTNPEGDSAGRLIDEAGLKGFRIGTAEVSPKHANFIQADPDGRAADVRAVMDAVVQRVRERTGIELRAETHLVGF 420
            R+A E  FGYR S +GPDD+VL A L+L   P   A   AE++EIV WRR HQPGGQNAGSVF NP GDSAGRLIDE GLKGFRIG+AEVS KHANFIQADP GRA DV A++  V + V +R G+EL+ E  L+GF
Sbjct:  178 RSAEECGFGYRRSNIGPDDIVLFAELRLVRDPDRAAESSAELSEIVSWRRAHQPGGQNAGSVFANPPGDSAGRLIDECGLKGFRIGSAEVSAKHANFIQADPGGRADDVEALIQHVQRVVADRFGVELKVENRLIGF 314          
BLAST of mRNA_M-pyrifera_M_contig115887.3300.1 vs. uniprot
Match: UPI001D1014CF (UDP-N-acetylmuramate dehydrogenase n=1 Tax=Aquihabitans sp. Kera 3 TaxID=2884263 RepID=UPI001D1014CF)

HSP 1 Score: 174 bits (440), Expect = 1.750e-50
Identity = 86/133 (64.66%), Postives = 103/133 (77.44%), Query Frame = 1
Query:   22 AAELAFGYRTSALGPDDLVLGARLQLAPGDPAVGRAEMAEIVQWRRDHQPGGQNAGSVFTNPEGDSAGRLIDEAGLKGFRIGTAEVSPKHANFIQADPDGRAADVRAVMDAVVQRVRERTGIELRAETHLVGF 420
            A++L   YR+S +  D +V+ A L+L PGD A G AE++EIV+WRR+HQPGGQNAGSVFTNPEGDSAGRLID AG +G RIGTAEVS KHANFIQAD  G A DV A+M AV +RV +  G+EL  ET +VGF
Sbjct:  167 ASDLDLAYRSSNVRDDQVVVHADLRLRPGDVAAGEAELSEIVRWRREHQPGGQNAGSVFTNPEGDSAGRLIDAAGCRGLRIGTAEVSTKHANFIQADAGGSADDVFALMVAVARRVMDEHGVELHPETRMVGF 299          
BLAST of mRNA_M-pyrifera_M_contig115887.3300.1 vs. uniprot
Match: A0A7X7HRH5_9ACTN (UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7HRH5_9ACTN)

HSP 1 Score: 172 bits (437), Expect = 5.770e-50
Identity = 85/134 (63.43%), Postives = 101/134 (75.37%), Query Frame = 1
Query:   19 TAAELAFGYRTSALGPDDLVLGARLQLAPGDPAVGRAEMAEIVQWRRDHQPGGQNAGSVFTNPEGDSAGRLIDEAGLKGFRIGTAEVSPKHANFIQADPDGRAADVRAVMDAVVQRVRERTGIELRAETHLVGF 420
            T   L  GYR+S++ P  +V  A L LA G+ +    +++EIV+WRRD+QPGGQNAGSVFTNP GDSAGRLID AG KG RIGTAEVSPKHANFIQADP G A DV+ +MD V +RV + TG+ L AET LVGF
Sbjct:  177 TPPMLELGYRSSSVVPHQVVAWAELDLASGNRSTSEDDLSEIVRWRRDNQPGGQNAGSVFTNPSGDSAGRLIDLAGCKGLRIGTAEVSPKHANFIQADPGGSADDVKRLMDEVARRVADATGVTLHAETRLVGF 310          
BLAST of mRNA_M-pyrifera_M_contig115887.3300.1 vs. uniprot
Match: A0A3D5GK23_9ACTN (UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3D5GK23_9ACTN)

HSP 1 Score: 169 bits (428), Expect = 1.260e-48
Identity = 83/140 (59.29%), Postives = 104/140 (74.29%), Query Frame = 1
Query:    1 GSRENRTAAELAFGYRTSALGPDDLVLGARLQLAPGDPAVGRAEMAEIVQWRRDHQPGGQNAGSVFTNPEGDSAGRLIDEAGLKGFRIGTAEVSPKHANFIQADPDGRAADVRAVMDAVVQRVRERTGIELRAETHLVGF 420
            GS   RTA EL  GYRTS L P ++V+  RL L PGD   G A ++E+V+WRR++QPGGQNAGSVFTNP+GDSAGRL++ AG +G R+GTAEVS +HANFIQAD  G A DV A+M  V ++V E  G++L  ET +VGF
Sbjct:  175 GSTVERTADELNLGYRTSTLEPGEIVVSVRLALEPGDRLDGEARLSEVVRWRRENQPGGQNAGSVFTNPDGDSAGRLVELAGCRGLRLGTAEVSSRHANFIQADEGGSADDVAALMTEVARQVAEVHGVDLVPETVMVGF 314          
BLAST of mRNA_M-pyrifera_M_contig115887.3300.1 vs. uniprot
Match: A0A7Y2IG83_9ACTN (UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2IG83_9ACTN)

HSP 1 Score: 168 bits (426), Expect = 3.080e-48
Identity = 89/144 (61.81%), Postives = 103/144 (71.53%), Query Frame = 1
Query:    1 GSRENRTAAELAFGYRTSALGPDDLVLGARLQLAPGD--PAVGRA--EMAEIVQWRRDHQPGGQNAGSVFTNPEGDSAGRLIDEAGLKGFRIGTAEVSPKHANFIQADPDGRAADVRAVMDAVVQRVRERTGIELRAETHLVGF 420
            G    RTAA+L FGYR S +G DD+VL A L L+  +   A+G    E+ EIVQWRR +QPGGQNAGSVF NP GDSAGR+ID  GLKGFRIG+A VS KHANFIQADP G A DV AV+ AV  R+ ER G+ L+ E  LVGF
Sbjct:  167 GGPSQRTAADLEFGYRQSTVGSDDVVLFAELLLSAEERSDAIGHGTRELTEIVQWRRANQPGGQNAGSVFANPPGDSAGRMIDACGLKGFRIGSASVSTKHANFIQADPGGSADDVAAVIAAVQARIDERFGVRLQVENRLVGF 310          
BLAST of mRNA_M-pyrifera_M_contig115887.3300.1 vs. uniprot
Match: A0A538HGK2_9ACTN (UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538HGK2_9ACTN)

HSP 1 Score: 167 bits (424), Expect = 3.120e-48
Identity = 83/141 (58.87%), Postives = 98/141 (69.50%), Query Frame = 1
Query:    1 GSRENRTAAELAFGYRTSALGPDDLVLGARLQLAPGDPAVGRAEMAEIVQWRRDHQPGGQNAGSVFTNPEGDSAGRLIDEAGLKGFRIGTAEVSPKHANFIQADPDGRAADVRAVMDAVVQRVRERTGIELRAETHLVGFV 423
            G+      AEL  GYR S++ PD +VL A   L  GD     AE+A IV+WRR+HQPGG NAGSVFTNP GDSAGRLID AGLKG R+G+A VSPKHANF QAD DG A DVRA++D V + V ER G+ L  E  ++GF 
Sbjct:  156 GAETEIAGAELVLGYRRSSVTPDQVVLWAEFGLREGDREASEAEVAGIVRWRREHQPGGANAGSVFTNPSGDSAGRLIDAAGLKGHRVGSAVVSPKHANFFQADEDGSADDVRALIDEVRRLVEERMGVLLEPELRMIGFT 296          
BLAST of mRNA_M-pyrifera_M_contig115887.3300.1 vs. uniprot
Match: A0A7Y2DB40_9ACTN (UDP-N-acetylenolpyruvoylglucosamine reductase n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DB40_9ACTN)

HSP 1 Score: 168 bits (426), Expect = 3.330e-48
Identity = 84/135 (62.22%), Postives = 103/135 (76.30%), Query Frame = 1
Query:   28 ELAFGYRTSALGPDDLVLGARLQL--APGDPAVGRAEMAEIVQWRRDHQPGGQNAGSVFTNPEGDSAGRLIDEAGLKGFRIGTAEVSPKHANFIQADPDGRAADVRAVMDAVVQRVRERTGIELRAETHLVGFVD 426
            +LAFGYR SA+    +V+  +L+L  + G    G A ++EIV+WRR+HQPGGQNAGSVFTNPEGDSAGRLID AG KG R+G+AEVS KHANFIQADPDG A DV A+M A++ RV E +G+ L  ET LVGF +
Sbjct:  176 QLAFGYRCSAIAAHHIVVQVQLELEVSGGGVEAGEAALSEIVRWRREHQPGGQNAGSVFTNPEGDSAGRLIDAAGGKGLRVGSAEVSTKHANFIQADPDGSADDVVALMRAIMTRVHEHSGVRLHPETVLVGFPE 310          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115887.3300.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X6ATV0_9ACTN2.500e-5969.18UDP-N-acetylenolpyruvoylglucosamine reductase n=1 ... [more]
A0A358A3T9_9ACTN1.220e-5465.07UDP-N-acetylmuramate dehydrogenase (Fragment) n=1 ... [more]
A0A2E8LAP6_9ACTN7.480e-5364.38UDP-N-acetylenolpyruvoylglucosamine reductase n=6 ... [more]
A0A7Y2DS79_9ACTN2.140e-5164.96UDP-N-acetylenolpyruvoylglucosamine reductase n=1 ... [more]
UPI001D1014CF1.750e-5064.66UDP-N-acetylmuramate dehydrogenase n=1 Tax=Aquihab... [more]
A0A7X7HRH5_9ACTN5.770e-5063.43UDP-N-acetylenolpyruvoylglucosamine reductase n=1 ... [more]
A0A3D5GK23_9ACTN1.260e-4859.29UDP-N-acetylenolpyruvoylglucosamine reductase n=1 ... [more]
A0A7Y2IG83_9ACTN3.080e-4861.81UDP-N-acetylenolpyruvoylglucosamine reductase n=1 ... [more]
A0A538HGK2_9ACTN3.120e-4858.87UDP-N-acetylenolpyruvoylglucosamine reductase n=1 ... [more]
A0A7Y2DB40_9ACTN3.330e-4862.22UDP-N-acetylenolpyruvoylglucosamine reductase n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115887contigM-pyrifera_M_contig115887:1..559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score135.6
Seed ortholog evalue1.3e-29
Seed eggNOG ortholog525909.Afer_1243
Preferred namemurB
KEGG rclassRC02639
KEGG koko:K00075
KEGG ReactionR03191,R03192
KEGG Pathwayko00520,ko00550,ko01100,map00520,map00550,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Cell wall formation
EggNOG OGs2HG0Y@201174,4CMXR@84992,COG0812@1,COG0812@2
EC1.3.1.98
COG Functional cat.M
Best tax levelAcidimicrobiia
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01011
Exons1
Model size559
Cds size303
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115887.3300.1prot_M-pyrifera_M_contig115887.3300.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115887 125..427 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815675.4996626-UTR-M-pyrifera_M_contig115887:0..1241622815675.4996626-UTR-M-pyrifera_M_contig115887:0..124Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115887 1..124 -
1692277516.416324-UTR-M-pyrifera_M_contig115887:0..1241692277516.416324-UTR-M-pyrifera_M_contig115887:0..124Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115887 1..124 -
1622815675.523069-UTR-M-pyrifera_M_contig115887:427..5591622815675.523069-UTR-M-pyrifera_M_contig115887:427..559Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115887 428..559 -
1692277516.4485-UTR-M-pyrifera_M_contig115887:427..5591692277516.4485-UTR-M-pyrifera_M_contig115887:427..559Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115887 428..559 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815675.5113404-CDS-M-pyrifera_M_contig115887:124..4271622815675.5113404-CDS-M-pyrifera_M_contig115887:124..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115887 125..427 -
1692277516.438154-CDS-M-pyrifera_M_contig115887:124..4271692277516.438154-CDS-M-pyrifera_M_contig115887:124..427Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115887 125..427 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115887.3300.1

>prot_M-pyrifera_M_contig115887.3300.1 ID=prot_M-pyrifera_M_contig115887.3300.1|Name=mRNA_M-pyrifera_M_contig115887.3300.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=101bp
MAEIVQWRRDHQPGGQNAGSVFTNPEGDSAGRLIDEAGLKGFRIGTAEVS
PKHANFIQADPDGRAADVRAVMDAVVQRVRERTGIELRAETHLVGFVDGD
*
back to top

mRNA from alignment at M-pyrifera_M_contig115887:1..559-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115887.3300.1 ID=mRNA_M-pyrifera_M_contig115887.3300.1|Name=mRNA_M-pyrifera_M_contig115887.3300.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=559bp|location=Sequence derived from alignment at M-pyrifera_M_contig115887:1..559- (Macrocystis pyrifera P11B4 male)
GGCTCGCGGGAAAACCGTACGGCAGCCGAACTGGCCTTCGGCTATCGCAC GTCCGCCCTCGGACCCGACGACCTCGTGCTCGGTGCGAGGCTCCAACTGG CACCCGGCGACCCCGCCGTCGGCCGGGCCGAGATGGCCGAGATCGTGCAG TGGCGCCGCGATCACCAACCCGGCGGTCAGAACGCCGGTTCGGTGTTCAC CAACCCGGAGGGCGACAGCGCGGGTCGACTGATCGACGAGGCAGGGCTCA AGGGATTCCGCATCGGCACCGCAGAGGTGTCGCCCAAGCACGCCAACTTC ATCCAGGCCGATCCCGACGGCCGCGCGGCCGACGTGCGCGCCGTCATGGA TGCCGTCGTGCAACGCGTGCGCGAGCGCACGGGAATCGAGCTGCGGGCCG AAACCCACCTCGTCGGGTTCGTCGATGGCGATTGACCCGCGCATCCGGGC TCGCCGGGTCGAGGTCCGCCGTGCCGAAGGTCGCCGCCGCCTCCGCTTCC TGATGGTCGCCGTGGGGATCGTCGGGTTGGCGGAGGGCGCATGGGGTCTC ACCCGCACC
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig115887:1..559-

>mRNA_M-pyrifera_M_contig115887.3300.1 ID=mRNA_M-pyrifera_M_contig115887.3300.1|Name=mRNA_M-pyrifera_M_contig115887.3300.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=606bp|location=Sequence derived from alignment at M-pyrifera_M_contig115887:1..559- (Macrocystis pyrifera P11B4 male)
ATGGCCGAGATCGTGCAGTGGCGCCGCGATCACCAACCCGGCGGTCAGAA
CGCCGGTTCGGTGTTCACCAACCCGGAGGGCGACAGCGCGGGTCGACTGA
TCGACGAGGCAGGGCTCAAGGGATTCCGCATCGGCACCGCAGAGGTGTCG
CCCAAGCACGCCAACTTCATCCAGGCCGATCCCGACGGCCGCGCGGCCGA
CGTGCGCGCCGTCATGGATGCCGTCGTGCAACGCGTGCGCGAGCGCACGG
GAATCGAGCTGCGGGCCGAAACCCACCTCGTCGGGTTCGTCGATGGCGAT
TGAATGGCCGAGATCGTGCAGTGGCGCCGCGATCACCAACCCGGCGGTCA
GAACGCCGGTTCGGTGTTCACCAACCCGGAGGGCGACAGCGCGGGTCGAC
TGATCGACGAGGCAGGGCTCAAGGGATTCCGCATCGGCACCGCAGAGGTG
TCGCCCAAGCACGCCAACTTCATCCAGGCCGATCCCGACGGCCGCGCGGC
CGACGTGCGCGCCGTCATGGATGCCGTCGTGCAACGCGTGCGCGAGCGCA
CGGGAATCGAGCTGCGGGCCGAAACCCACCTCGTCGGGTTCGTCGATGGC
GATTGA
back to top