mRNA_M-pyrifera_M_contig101583.329.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101583.329.1
Unique NamemRNA_M-pyrifera_M_contig101583.329.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101583.329.1 vs. uniprot
Match: A0A7V8V2M6_9BACT (Uncharacterized protein n=1 Tax=Bremerella alba TaxID=980252 RepID=A0A7V8V2M6_9BACT)

HSP 1 Score: 147 bits (371), Expect = 1.200e-43
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 1
Query:    1 MADALYISATFLNPQFHGRAAGGDAEWPPLPLRLFQDLIAGSADEIAETSDLTEALTRLEQQPPPAIVDPRV 216
            MADALYISATFLNPQFHGRAAGGDAEWPPLPLRLFQDLIAGSADEIAETSDLTEALTRLEQQPPPAIVDPRV
Sbjct:    1 MADALYISATFLNPQFHGRAAGGDAEWPPLPLRLFQDLIAGSADEIAETSDLTEALTRLEQQPPPAIVDPRV 72          
BLAST of mRNA_M-pyrifera_M_contig101583.329.1 vs. uniprot
Match: A0A7C4UKF7_9BACT (Type I-U CRISPR-associated protein Cas5/Cas6 n=1 Tax=Gemmataceae bacterium TaxID=2052164 RepID=A0A7C4UKF7_9BACT)

HSP 1 Score: 66.2 bits (160), Expect = 5.010e-11
Identity = 37/73 (50.68%), Postives = 44/73 (60.27%), Query Frame = 1
Query:    1 MADALYISATFLNPQFHGRAAGGDAEWPPLPLRLFQDLIAGSADEIAE---TSDLTEALTRLEQQPPPAIVDP 210
            M   L +S TF + +FHGR  GG  EWPP PLRLFQ L+A +   +     T D T+AL  LEQQ  PAIV P
Sbjct:    1 MPAYLCLSVTFHDERFHGRRDGGQPEWPPSPLRLFQALVAAAEAAVRAGGLTDDPTDALRWLEQQGSPAIVAP 73          
BLAST of mRNA_M-pyrifera_M_contig101583.329.1 vs. uniprot
Match: A0A2T6DGL1_9BACT (Type I-U CRISPR-associated protein Cas5/Cas6 n=1 Tax=Verrucomicrobia bacterium LW23 TaxID=2161867 RepID=A0A2T6DGL1_9BACT)

HSP 1 Score: 63.9 bits (154), Expect = 3.300e-10
Identity = 36/75 (48.00%), Postives = 42/75 (56.00%), Query Frame = 1
Query:    1 MADALYISATFLNPQFHGRAAGGDAEWPPLPLRLFQDLIAGSADEIAETSDLTE---ALTRLEQQPPPAIVDPRV 216
            M   L I+  FL   +HGRA GG+ EWPP PLRLFQ L+A +A    E   L     AL  LE Q PP IV P +
Sbjct:    1 MTKYLSIAVRFLQGMYHGRADGGEPEWPPSPLRLFQALVAAAAARANERELLQSGAPALLWLEDQAPPLIVAPAI 75          
BLAST of mRNA_M-pyrifera_M_contig101583.329.1 vs. uniprot
Match: A0A3A4JXW0_9DELT (Type I-U CRISPR-associated protein Cas5/Cas6 n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A3A4JXW0_9DELT)

HSP 1 Score: 59.3 bits (142), Expect = 1.400e-8
Identity = 30/70 (42.86%), Postives = 39/70 (55.71%), Query Frame = 1
Query:    1 MADALYISATFLNPQFHGRAAGGDAEWPPLPLRLFQDLIAGSADEIAETSDLTEALTRLEQQPPPAIVDP 210
            M    Y++  FLNP FHGR  GG+ EWPP P+R+FQ L+A  A    + +     L  LE   PP I+ P
Sbjct:    1 MPSHFYLTIRFLNPAFHGRKDGGEPEWPPSPMRMFQALVA--AAHRTDATLFVSVLEWLENLYPPIILAP 68          
BLAST of mRNA_M-pyrifera_M_contig101583.329.1 vs. uniprot
Match: D5STD6_PLAL2 (CRISPR-associated protein, GSU0054 family n=1 Tax=Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 / Mu 290) TaxID=521674 RepID=D5STD6_PLAL2)

HSP 1 Score: 57.8 bits (138), Expect = 4.890e-8
Identity = 28/67 (41.79%), Postives = 41/67 (61.19%), Query Frame = 1
Query:   13 LYISATFLNPQFHGRAAGGDAEWPPLPLRLFQDLIAGSADEIAETSDLT---EALTRLEQQPPPAIV 204
            L ++     P FHG+  GG+ EWPP PLRL+Q L+A +A +  +   +    +AL  LE+QP PAI+
Sbjct:    4 LCLTVRLHQPLFHGQRDGGEPEWPPSPLRLYQSLVAAAAAQTPDGDPMAVAGDALQWLERQPAPAII 70          
BLAST of mRNA_M-pyrifera_M_contig101583.329.1 vs. uniprot
Match: A0A8E6B2R3_9BACT (Type I-U CRISPR-associated protein Cas5/Cas6 n=1 Tax=Telmatocola sphagniphila TaxID=1123043 RepID=A0A8E6B2R3_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 6.660e-8
Identity = 33/71 (46.48%), Postives = 40/71 (56.34%), Query Frame = 1
Query:    1 MADALYISATFLNPQFHGRAAGGDAEWPPLPLRLFQDLIAGSADEIAETSDLT---EALTRLEQQPPPAIV 204
            M   L ++  +L P  HGR AGG+ EWPP PLRLFQ L+A +A    E   L     AL  LE +P P IV
Sbjct:    1 MKTQLCVTIRYLQPLSHGRGAGGEPEWPPTPLRLFQALVAAAAARWNERMVLAYAVPALRWLEGRPFPIIV 71          
BLAST of mRNA_M-pyrifera_M_contig101583.329.1 vs. uniprot
Match: A0A225D8L2_9BACT (CRISPR-associated protein Csb2 n=1 Tax=Fimbriiglobus ruber TaxID=1908690 RepID=A0A225D8L2_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 5.970e-7
Identity = 25/45 (55.56%), Postives = 32/45 (71.11%), Query Frame = 1
Query:    1 MADALYISATFLNPQ--FHGRAAGGDAEWPPLPLRLFQDLIAGSA 129
            M+D L  +  FL+P+  FHG+  GG+AEWPP PLRLFQ LI  +A
Sbjct:    1 MSDVLNFTVRFLDPEPSFHGKRDGGEAEWPPSPLRLFQALIDAAA 45          
BLAST of mRNA_M-pyrifera_M_contig101583.329.1 vs. uniprot
Match: A0A6P2D2E0_9BACT (Uncharacterized protein n=1 Tax=Gemmata massiliana TaxID=1210884 RepID=A0A6P2D2E0_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 8.180e-7
Identity = 31/67 (46.27%), Postives = 40/67 (59.70%), Query Frame = 1
Query:   19 ISATFLNPQFHGRAAGGDAEWPPLPLRLFQDLIAGSA-----DEIAETSDLTEALTRLEQQPPPAIV 204
            I+  FL P  HGR  GG+ EWPP PLR+FQ L+A SA      ++AE +    AL  L +QP P +V
Sbjct:    7 ITIRFLQPFSHGRGDGGEPEWPPSPLRVFQALVAASAAYWRDHQLAEYAG--PALEWLAKQPAPVLV 71          
BLAST of mRNA_M-pyrifera_M_contig101583.329.1 vs. uniprot
Match: A0A142XGY4_9BACT (CRISPR-associated protein n=1 Tax=Gemmata sp. SH-PL17 TaxID=1630693 RepID=A0A142XGY4_9BACT)

HSP 1 Score: 53.5 bits (127), Expect = 1.530e-6
Identity = 23/50 (46.00%), Postives = 31/50 (62.00%), Query Frame = 1
Query:    1 MADALYISATFLNPQFHGRAAGGDAEWPPLPLRLFQDLIAGSADEIAETS 150
            M + L ++  F +P F GR  GG+ EWPP PLR+FQ L+A SA    + S
Sbjct:    1 MPNYLCVTIRFADPTFRGRGDGGEPEWPPSPLRVFQALVAASAARFGDPS 50          
BLAST of mRNA_M-pyrifera_M_contig101583.329.1 vs. uniprot
Match: UPI001C84A6B6 (type I-U CRISPR-associated protein Csb2 n=1 Tax=Desulfuromonas versatilis TaxID=2802975 RepID=UPI001C84A6B6)

HSP 1 Score: 52.0 bits (123), Expect = 5.350e-6
Identity = 30/70 (42.86%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   13 LYISAT--FLNPQFHGRAAGGDAEWPPLPLRLFQDLIAGSA--DEIAETSDLTEALTRLEQQPPPAIVDP 210
            +Y + T  FL+ +FHGR  GG+ EWPP PLR+FQ L+A +A  +  A +   + AL  L+ Q  P I+ P
Sbjct:    3 MYFALTIDFLDCRFHGRRDGGEPEWPPSPLRVFQALVAAAARMNGGALSDGDSAALQWLQAQTAPVIIAP 72          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101583.329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A7V8V2M6_9BACT1.200e-43100.00Uncharacterized protein n=1 Tax=Bremerella alba Ta... [more]
A0A7C4UKF7_9BACT5.010e-1150.68Type I-U CRISPR-associated protein Cas5/Cas6 n=1 T... [more]
A0A2T6DGL1_9BACT3.300e-1048.00Type I-U CRISPR-associated protein Cas5/Cas6 n=1 T... [more]
A0A3A4JXW0_9DELT1.400e-842.86Type I-U CRISPR-associated protein Cas5/Cas6 n=1 T... [more]
D5STD6_PLAL24.890e-841.79CRISPR-associated protein, GSU0054 family n=1 Tax=... [more]
A0A8E6B2R3_9BACT6.660e-846.48Type I-U CRISPR-associated protein Cas5/Cas6 n=1 T... [more]
A0A225D8L2_9BACT5.970e-755.56CRISPR-associated protein Csb2 n=1 Tax=Fimbriiglob... [more]
A0A6P2D2E0_9BACT8.180e-746.27Uncharacterized protein n=1 Tax=Gemmata massiliana... [more]
A0A142XGY4_9BACT1.530e-646.00CRISPR-associated protein n=1 Tax=Gemmata sp. SH-P... [more]
UPI001C84A6B65.350e-642.86type I-U CRISPR-associated protein Csb2 n=1 Tax=De... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101583contigM-pyrifera_M_contig101583:452..667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score61.6
Seed ortholog evalue1.7e-07
Seed eggNOG ortholog243231.GSU0054
KEGG koko:K19132
Hectar predicted targeting categoryother localisation
EggNOG free text desc.CRISPR-associated protein, GSU0054 family (Cas_GSU0054)
EggNOG OGs1RD13@1224,2DBHK@1,2Z9AT@2
COG Functional cat.S
Best tax levelProteobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02048
Exons1
Model size216
Cds size216
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815514.436127-CDS-M-pyrifera_M_contig101583:451..6671622815514.436127-CDS-M-pyrifera_M_contig101583:451..667Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101583 452..667 +
1692277445.5388224-CDS-M-pyrifera_M_contig101583:451..6671692277445.5388224-CDS-M-pyrifera_M_contig101583:451..667Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101583 452..667 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101583.329.1prot_M-pyrifera_M_contig101583.329.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101583 452..667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101583.329.1

>prot_M-pyrifera_M_contig101583.329.1 ID=prot_M-pyrifera_M_contig101583.329.1|Name=mRNA_M-pyrifera_M_contig101583.329.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=72bp
MADALYISATFLNPQFHGRAAGGDAEWPPLPLRLFQDLIAGSADEIAETS
DLTEALTRLEQQPPPAIVDPRV
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mRNA from alignment at M-pyrifera_M_contig101583:452..667+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101583.329.1 ID=mRNA_M-pyrifera_M_contig101583.329.1|Name=mRNA_M-pyrifera_M_contig101583.329.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=216bp|location=Sequence derived from alignment at M-pyrifera_M_contig101583:452..667+ (Macrocystis pyrifera P11B4 male)
ATGGCTGACGCGCTTTATATTTCGGCGACCTTTCTCAATCCCCAATTTCA TGGACGGGCCGCTGGTGGTGATGCCGAATGGCCTCCTTTGCCACTGCGGC TATTTCAGGACTTGATTGCCGGCAGTGCTGACGAAATTGCCGAGACTTCT GATTTGACCGAGGCATTGACCAGGTTAGAGCAGCAACCACCACCGGCAAT TGTCGATCCACGCGTA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101583:452..667+

>mRNA_M-pyrifera_M_contig101583.329.1 ID=mRNA_M-pyrifera_M_contig101583.329.1|Name=mRNA_M-pyrifera_M_contig101583.329.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=432bp|location=Sequence derived from alignment at M-pyrifera_M_contig101583:452..667+ (Macrocystis pyrifera P11B4 male)
ATGGCTGACGCGCTTTATATTTCGGCGACCTTTCTCAATCCCCAATTTCA
TGGACGGGCCGCTGGTGGTGATGCCGAATGGCCTCCTTTGCCACTGCGGC
TATTTCAGGACTTGATTGCCGGCAGTGCTGACGAAATTGCCGAGACTTCT
GATTTGACCGAGGCATTGACCAGGTTAGAGCAGCAACCACCACCGGCAAT
TGTCGATCCACGCGTAATGGCTGACGCGCTTTATATTTCGGCGACCTTTC
TCAATCCCCAATTTCATGGACGGGCCGCTGGTGGTGATGCCGAATGGCCT
CCTTTGCCACTGCGGCTATTTCAGGACTTGATTGCCGGCAGTGCTGACGA
AATTGCCGAGACTTCTGATTTGACCGAGGCATTGACCAGGTTAGAGCAGC
AACCACCACCGGCAATTGTCGATCCACGCGTA
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