mRNA_M-pyrifera_M_contig101580.326.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101580.326.1
Unique NamemRNA_M-pyrifera_M_contig101580.326.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101580.326.1 vs. uniprot
Match: A0A6B1AWD2_9ACTN (ComEA family DNA-binding protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1AWD2_9ACTN)

HSP 1 Score: 174 bits (440), Expect = 5.060e-52
Identity = 98/152 (64.47%), Postives = 111/152 (73.03%), Query Frame = 1
Query:   19 SAESAATIVVHVDGAVARPGVHELPTGARVVDAIEAGGGLAGDADRERLNLAAPLSDGQRAWVPWLGEEEPAVVVPESGAGAD-GSSTSGPVNLNTADQAALETLPGIGPSIATAIMEHRAREGPFARVEDLLEVAGIGPTRLAQLEPLVAV 471
            ++E++  IVVH++GAVA PGVHEL  G+RV DAI+A  GL  DADR R+NLAA L+DGQR WVP LGE EPAVV     A AD G S   PVNLNT D  ALETLPGIGPSIA AI+ HR   G F+RVE LLEV GIG  +L QLEPLV V
Sbjct:   73 ASEASGRIVVHIEGAVALPGVHELAAGSRVHDAIDAADGLTADADRSRINLAAQLADGQRVWVPALGEPEPAVV--NMAAAADPGGSGGAPVNLNTGDLQALETLPGIGPSIAAAIIRHRREHGAFSRVEALLEVPGIGQAKLEQLEPLVTV 222          
BLAST of mRNA_M-pyrifera_M_contig101580.326.1 vs. uniprot
Match: A0A6N9EVN7_9ACTN (Uncharacterized protein n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6N9EVN7_9ACTN)

HSP 1 Score: 172 bits (435), Expect = 3.670e-51
Identity = 91/160 (56.88%), Postives = 111/160 (69.38%), Query Frame = 1
Query:    1 PSPGPTSAESAATIVVHVDGAVARPGVHELPTGARVVDAIEAGGGLAGDADRERLNLAAPLSDGQRAWVPWLGEEEPAVVVPESGAGADGS---STSGPVNLNTADQAALETLPGIGPSIATAIMEHRAREGPFARVEDLLEVAGIGPTRLAQLEPLVAV 471
            P PGP+       IVV V GAVARPG+HELP  +RV DA+EA GGL  +ADR RLNLA PLSDG R WVP +GE     +VP +    DGS   +   P+N+N AD AALE LPGIGP++A AI+EHR R GPFA V++L+EV+GIGP +L Q+ PL  V
Sbjct:   68 PVPGPSPMPDPGRIVVDVVGAVARPGLHELPATSRVADAVEAAGGLTAEADRMRLNLAEPLSDGSRLWVPAVGESAGPEIVPVTAGAGDGSRAGAAGAPLNVNIADAAALEELPGIGPALAVAIVEHRRRSGPFATVDELVEVSGIGPVKLEQIRPLATV 227          
BLAST of mRNA_M-pyrifera_M_contig101580.326.1 vs. uniprot
Match: A0A6N8YBX8_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6N8YBX8_9ACTN)

HSP 1 Score: 169 bits (429), Expect = 3.640e-50
Identity = 93/164 (56.71%), Postives = 110/164 (67.07%), Query Frame = 1
Query:    1 PSPGPTSAESAATIVVHVDGAVARPGVHELPTGARVVDAIEAGGGLAGDADRERLNLAAPLSDGQRAWVPWLGEEEPAVVVPESGA-------GADGSSTSGPVNLNTADQAALETLPGIGPSIATAIMEHRAREGPFARVEDLLEVAGIGPTRLAQLEPLVAV 471
            P P P S    A IVV V GAVARPG+HELP  +R+ DA+EA GGL  DADR RLNLA PLSDG R WVP +GE     VVP +         GA G      +N+NTAD  ALE LPGIGP++A AI+EHR R GPFA V++L+EV+GIGPT+L Q+ PL  V
Sbjct:   71 PIPAPLSVPDPARIVVDVVGAVARPGLHELPAASRIADAVEAAGGLTADADRMRLNLAEPLSDGSRLWVPAVGEGAGPEVVPLTAGTSDAGRVGAGGGRAGARLNVNTADAVALEELPGIGPALAGAIVEHRRRSGPFATVDELVEVSGIGPTKLEQIRPLATV 234          
BLAST of mRNA_M-pyrifera_M_contig101580.326.1 vs. uniprot
Match: A0A7K2AUN1_9ACTN (Uncharacterized protein n=3 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2AUN1_9ACTN)

HSP 1 Score: 167 bits (424), Expect = 1.740e-49
Identity = 91/160 (56.88%), Postives = 110/160 (68.75%), Query Frame = 1
Query:    1 PSPGPTSAESAATIVVHVDGAVARPGVHELPTGARVVDAIEAGGGLAGDADRERLNLAAPLSDGQRAWVPWLGEEEPAVVVPESGAGADGS---STSGPVNLNTADQAALETLPGIGPSIATAIMEHRAREGPFARVEDLLEVAGIGPTRLAQLEPLVAV 471
            P PGP+     A IVV V GAV RPG+HELP  +RV DA+EA GGL  +ADR RLNLA PL DG R WVP +GE     VVP +    DGS   +    +N+NTAD AALE LPGIGP++A AI+EHR R GPFA V++L+EV+GIGP +L Q+ PL  V
Sbjct:   69 PVPGPSXMPDPARIVVDVVGAVVRPGLHELPATSRVADAVEAAGGLTAEADRMRLNLAEPLLDGARLWVPEVGESAGPEVVPVTAGTGDGSRAGAAGARLNVNTADAAALEELPGIGPALAVAIVEHRRRSGPFATVDELVEVSGIGPVKLEQIRPLATV 228          
BLAST of mRNA_M-pyrifera_M_contig101580.326.1 vs. uniprot
Match: A0A3M2GBG5_ACTSX (Uncharacterized protein n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GBG5_ACTSX)

HSP 1 Score: 165 bits (418), Expect = 1.720e-48
Identity = 87/157 (55.41%), Postives = 110/157 (70.06%), Query Frame = 1
Query:    1 PSPGPTSAESAATIVVHVDGAVARPGVHELPTGARVVDAIEAGGGLAGDADRERLNLAAPLSDGQRAWVPWLGEEEPAVVVPESGAGADGSSTSGPVNLNTADQAALETLPGIGPSIATAIMEHRAREGPFARVEDLLEVAGIGPTRLAQLEPLVAV 471
            P+  P ++     +VVHVDGAV RPG+HELP G+RV DA+ A GGL  DADR R+NLAAP+ DG R W+P  GEE    V+  + AG   + ++GPV++NTAD A LE+LPGIGP+IA AI+E R   G FA V++L+EV GIGPTRL  L  LV V
Sbjct:   81 PTIAPPTSTRPPALVVHVDGAVNRPGLHELPAGSRVADAVRAAGGLTDDADRTRINLAAPVLDGSRVWIPTRGEEAAPPVLTGATAGTGAAGSAGPVDVNTADPATLESLPGIGPTIAAAIVETRTDRGGFASVDELVEVPGIGPTRLEALRDLVTV 237          
BLAST of mRNA_M-pyrifera_M_contig101580.326.1 vs. uniprot
Match: A0A7K2E3I4_9ACTN (ComEA family DNA-binding protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K2E3I4_9ACTN)

HSP 1 Score: 164 bits (414), Expect = 6.740e-48
Identity = 90/162 (55.56%), Postives = 113/162 (69.75%), Query Frame = 1
Query:    7 PGPTSAESAATIVVHVDGAVARPGVHELPTGARVVDAIEAGGGLAGDADRERLNLAAPLSDGQRAWVPWLGEEE-PAVVVPESGAGADGSSTSG------PVNLNTADQAALETLPGIGPSIATAIMEHRAREGPFARVEDLLEVAGIGPTRLAQLEPLVAV 471
            P P+    +  IVV V GAVARPG+HELP  +RV DA+EA GGL  +ADR RLNLA PLSDG R WVP +G+   P VV   +GAG  G + +G      P+N+NTAD AALE LPGIGP++A AI+EHR + GPF  VE+L+EV+GIGP +L ++ PL  V
Sbjct:   73 PAPSPMPDSGRIVVDVVGAVARPGLHELPATSRVADAVEAAGGLTAEADRLRLNLAEPLSDGARLWVPEVGQPAGPEVVAVTAGAGDGGRAGAGGGRPGAPLNVNTADAAALEELPGIGPALAAAIVEHRRQSGPFTTVEELVEVSGIGPAKLERIRPLATV 234          
BLAST of mRNA_M-pyrifera_M_contig101580.326.1 vs. uniprot
Match: A0A6B1E9E8_9ACTN (ComEA family DNA-binding protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1E9E8_9ACTN)

HSP 1 Score: 160 bits (406), Expect = 1.250e-46
Identity = 89/155 (57.42%), Postives = 109/155 (70.32%), Query Frame = 1
Query:   16 TSAESAATIVVHVDGAVARPGVHELPTGARVVDAIEAGGGLAGDADRERLNLAAPLSDGQRAWVPWLGEEEPAVVVPE-SGAGADG------SSTSGPVNLNTADQAALETLPGIGPSIATAIMEHRAREGPFARVEDLLEVAGIGPTRLAQLEP 459
            T+A   A IVV V GAV RPGVHELP G+RV DAI+A GG    ADR RLNLA P++DG R WVP +GE     +VP   G+G  G       S SG V++NTAD A+LE+LPGIGPS+A AI+EHR R GPFA V+DL++V+GIGP +L Q+ P
Sbjct:   81 TTASEPARIVVDVVGAVVRPGVHELPAGSRVTDAIDAAGGFTTGADRIRLNLAQPVADGSRVWVPAIGEPTGPDLVPVIGGSGGTGVAEGGRESGSGTVDINTADAASLESLPGIGPSLAAAIVEHRKRHGPFAAVDDLIDVSGIGPAKLEQIRP 235          
BLAST of mRNA_M-pyrifera_M_contig101580.326.1 vs. uniprot
Match: A0A7X7D834_9ACTN (ComEA family DNA-binding protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7X7D834_9ACTN)

HSP 1 Score: 150 bits (380), Expect = 3.200e-42
Identity = 87/160 (54.37%), Postives = 107/160 (66.88%), Query Frame = 1
Query:    7 PGPTSAESAATIVVHVDGAVARPGVHELPTGARVVDAIEAGGGLAGDADRERLNLAAPLSDGQRAWVPWLGEEEPAVVVPESGAGA------DGSSTSGPV--NLNTADQAALETLPGIGPSIATAIMEHRAREGPFARVEDLLEVAGIGPTRLAQLEPL 462
            P  TSAE+ A +VVH  GAVA PGV+ +P G+RV D I A GGLA DAD +R+NLAAPL DG+R WVP  GE E   VV     GA      +G+  SG V  +LNTA    LE+LPG+GP+ A AI++HR R GPFA V+DL+EV GIG  +L Q+ PL
Sbjct:  122 PAETSAETPAELVVHASGAVASPGVYRVPAGSRVDDLIRAAGGLALDADVDRVNLAAPLVDGERIWVPRRGEVEVPDVVAGGAGGATGPGAPNGADQSGDVVIDLNTATAEELESLPGVGPATAAAILDHRERNGPFASVDDLIEVRGIGEAKLEQIRPL 281          
BLAST of mRNA_M-pyrifera_M_contig101580.326.1 vs. uniprot
Match: A0A3C2AZR5_9ACTN (Competence protein ComEA n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A3C2AZR5_9ACTN)

HSP 1 Score: 149 bits (377), Expect = 3.300e-42
Identity = 82/151 (54.30%), Postives = 104/151 (68.87%), Query Frame = 1
Query:   40 IVVHVDGAVARPGVHELPTGARVVDAIEAGGGLAGDADRERLNLAAPLSDGQRAWVPWLGEEEPAVV------VPESGAGADGS-STSGPVNLNTADQAALETLPGIGPSIATAIMEHRAREGPFARVEDLLEVAGIGPTRLAQLEPLVAV 471
            +VVHV GAV  PGV+ +  GARVVDAIE  GGLA DAD + +NLAAP+ DG+R +VP +G+  P+VV      VP    G DGS + SGP+N+NTA  A LE LPG+GP+ A AI+ HR   GPF+ V+DL +VAGIGP +L  +  LV V
Sbjct:   96 LVVHVAGAVVAPGVYRVSDGARVVDAIEVAGGLAADADLDAVNLAAPIRDGERLYVPRVGQPVPSVVTGGGGGVPPGEGGGDGSVAPSGPININTATAAELEALPGVGPATAAAIVAHRDEHGPFSTVDDLTDVAGIGPAKLEAVRGLVTV 246          
BLAST of mRNA_M-pyrifera_M_contig101580.326.1 vs. uniprot
Match: A0A349B4N1_9ACTN (Competence protein ComEA n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A349B4N1_9ACTN)

HSP 1 Score: 146 bits (369), Expect = 2.580e-41
Identity = 81/152 (53.29%), Postives = 100/152 (65.79%), Query Frame = 1
Query:   16 TSAESAATIVVHVDGAVARPGVHELPTGARVVDAIEAGGGLAGDADRERLNLAAPLSDGQRAWVPWLGEEEPAVVVPESGAGADGSSTSGPVNLNTADQAALETLPGIGPSIATAIMEHRAREGPFARVEDLLEVAGIGPTRLAQLEPLVAV 471
            T+  +A  +VVHV GAV  PGVH+LP G+RV+DA++A GGL  DAD   +NLAA + DG + +VP +GE     V P    G DG+   GPV+LN AD   LETLPGIGP+ A AI+EHR R GPF  V+ LL V GIG  +LA L  LV V
Sbjct:   74 TTTTTAGPVVVHVAGAVVAPGVHQLPPGSRVIDAVDASGGLTPDADAGAVNLAAEVVDGSQVYVPRVGE-----VPPPXXXGPDGAVDDGPVDLNAADATLLETLPGIGPATAAAIVEHRERHGPFTTVDGLLAVRGIGEAKLAALRDLVRV 220          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101580.326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B1AWD2_9ACTN5.060e-5264.47ComEA family DNA-binding protein n=1 Tax=Acidimicr... [more]
A0A6N9EVN7_9ACTN3.670e-5156.88Uncharacterized protein n=3 Tax=Acidimicrobiaceae ... [more]
A0A6N8YBX8_9ACTN3.640e-5056.71Uncharacterized protein n=2 Tax=Acidimicrobiaceae ... [more]
A0A7K2AUN1_9ACTN1.740e-4956.88Uncharacterized protein n=3 Tax=Acidimicrobiaceae ... [more]
A0A3M2GBG5_ACTSX1.720e-4855.41Uncharacterized protein n=1 Tax=Actinomyces sp. Ta... [more]
A0A7K2E3I4_9ACTN6.740e-4855.56ComEA family DNA-binding protein n=1 Tax=Acidimicr... [more]
A0A6B1E9E8_9ACTN1.250e-4657.42ComEA family DNA-binding protein n=1 Tax=Acidimicr... [more]
A0A7X7D834_9ACTN3.200e-4254.38ComEA family DNA-binding protein n=1 Tax=Acidimicr... [more]
A0A3C2AZR5_9ACTN3.300e-4254.30Competence protein ComEA n=1 Tax=Acidimicrobiaceae... [more]
A0A349B4N1_9ACTN2.580e-4153.29Competence protein ComEA n=1 Tax=Acidimicrobiaceae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101580contigM-pyrifera_M_contig101580:53..526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score139.8
Seed ortholog evalue1.1e-30
Seed eggNOG ortholog1123065.ATWL01000007_gene3261
Preferred namecomEA
KEGG koko:K02237
KEGG TC3.A.11.1,3.A.11.2
KEGG ModuleM00429
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Competence protein ComEA
EggNOG OGs2IQDC@201174,COG1555@1,COG1555@2
COG Functional cat.L
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko02044
Exons1
Model size474
Cds size474
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815514.3202982-CDS-M-pyrifera_M_contig101580:52..5261622815514.3202982-CDS-M-pyrifera_M_contig101580:52..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101580 53..526 +
1692277445.5026693-CDS-M-pyrifera_M_contig101580:52..5261692277445.5026693-CDS-M-pyrifera_M_contig101580:52..526Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101580 53..526 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101580.326.1prot_M-pyrifera_M_contig101580.326.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101580 53..526 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101580.326.1

>prot_M-pyrifera_M_contig101580.326.1 ID=prot_M-pyrifera_M_contig101580.326.1|Name=mRNA_M-pyrifera_M_contig101580.326.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=158bp
PSPGPTSAESAATIVVHVDGAVARPGVHELPTGARVVDAIEAGGGLAGDA
DRERLNLAAPLSDGQRAWVPWLGEEEPAVVVPESGAGADGSSTSGPVNLN
TADQAALETLPGIGPSIATAIMEHRAREGPFARVEDLLEVAGIGPTRLAQ
LEPLVAV*
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mRNA from alignment at M-pyrifera_M_contig101580:53..526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101580.326.1 ID=mRNA_M-pyrifera_M_contig101580.326.1|Name=mRNA_M-pyrifera_M_contig101580.326.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=474bp|location=Sequence derived from alignment at M-pyrifera_M_contig101580:53..526+ (Macrocystis pyrifera P11B4 male)
CCTTCGCCCGGGCCGACATCGGCCGAGAGCGCAGCCACGATCGTCGTCCA CGTCGATGGCGCAGTGGCGCGTCCCGGCGTGCACGAGCTCCCCACCGGGG CTCGTGTCGTCGATGCGATCGAGGCCGGCGGTGGGTTGGCCGGCGACGCC GACCGAGAGCGACTCAATCTGGCGGCGCCGCTCAGCGACGGGCAGCGGGC GTGGGTGCCGTGGTTGGGCGAGGAAGAGCCGGCGGTGGTCGTGCCCGAGA GCGGTGCCGGCGCCGACGGGTCATCGACGTCTGGTCCCGTCAATCTCAAC ACCGCTGACCAAGCGGCGCTCGAGACCCTGCCCGGGATCGGGCCGAGCAT TGCGACGGCGATAATGGAGCACCGAGCGCGCGAGGGCCCGTTCGCCCGGG TCGAAGATCTTCTCGAAGTGGCGGGGATCGGGCCCACCCGGTTGGCCCAG CTCGAACCCCTGGTCGCGGTATGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101580:53..526+

>mRNA_M-pyrifera_M_contig101580.326.1 ID=mRNA_M-pyrifera_M_contig101580.326.1|Name=mRNA_M-pyrifera_M_contig101580.326.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=948bp|location=Sequence derived from alignment at M-pyrifera_M_contig101580:53..526+ (Macrocystis pyrifera P11B4 male)
CCTTCGCCCGGGCCGACATCGGCCGAGAGCGCAGCCACGATCGTCGTCCA
CGTCGATGGCGCAGTGGCGCGTCCCGGCGTGCACGAGCTCCCCACCGGGG
CTCGTGTCGTCGATGCGATCGAGGCCGGCGGTGGGTTGGCCGGCGACGCC
GACCGAGAGCGACTCAATCTGGCGGCGCCGCTCAGCGACGGGCAGCGGGC
GTGGGTGCCGTGGTTGGGCGAGGAAGAGCCGGCGGTGGTCGTGCCCGAGA
GCGGTGCCGGCGCCGACGGGTCATCGACGTCTGGTCCCGTCAATCTCAAC
ACCGCTGACCAAGCGGCGCTCGAGACCCTGCCCGGGATCGGGCCGAGCAT
TGCGACGGCGATAATGGAGCACCGAGCGCGCGAGGGCCCGTTCGCCCGGG
TCGAAGATCTTCTCGAAGTGGCGGGGATCGGGCCCACCCGGTTGGCCCAG
CTCGAACCCCTGGTCGCGGTATGACCTTCGCCCGGGCCGACATCGGCCGA
GAGCGCAGCCACGATCGTCGTCCACGTCGATGGCGCAGTGGCGCGTCCCG
GCGTGCACGAGCTCCCCACCGGGGCTCGTGTCGTCGATGCGATCGAGGCC
GGCGGTGGGTTGGCCGGCGACGCCGACCGAGAGCGACTCAATCTGGCGGC
GCCGCTCAGCGACGGGCAGCGGGCGTGGGTGCCGTGGTTGGGCGAGGAAG
AGCCGGCGGTGGTCGTGCCCGAGAGCGGTGCCGGCGCCGACGGGTCATCG
ACGTCTGGTCCCGTCAATCTCAACACCGCTGACCAAGCGGCGCTCGAGAC
CCTGCCCGGGATCGGGCCGAGCATTGCGACGGCGATAATGGAGCACCGAG
CGCGCGAGGGCCCGTTCGCCCGGGTCGAAGATCTTCTCGAAGTGGCGGGG
ATCGGGCCCACCCGGTTGGCCCAGCTCGAACCCCTGGTCGCGGTATGA
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