mRNA_M-pyrifera_M_contig101551.319.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101551.319.1
Unique NamemRNA_M-pyrifera_M_contig101551.319.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101551.319.1 vs. uniprot
Match: A0A7S4IP85_9EUKA (Hypothetical protein n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4IP85_9EUKA)

HSP 1 Score: 121 bits (303), Expect = 2.110e-32
Identity = 58/99 (58.59%), Postives = 78/99 (78.79%), Query Frame = 1
Query:    1 LVDKAVEQMQERISQLVADSIRDQLYEKAVDCLKALRTGCVREEEADAYNAYLRKLRASHEGKRRDAFWQLVVAAGLTLIHEEECEDSPVTKAEAEEFL 297
            LVDKA+EQM+ERI QL+ DS++DQLY KA  C++ALR GCV+EEE  A+N +LR +R+ HEGKR +AFW L+V   ++LIHE ECE+S +TK E+E+  
Sbjct:   36 LVDKAIEQMKERILQLLNDSVKDQLYPKAFGCVEALRVGCVQEEEPAAFNTFLRLMRSMHEGKRHNAFWMLIVDKKVSLIHEGECEESDITKEESEQVF 134          
BLAST of mRNA_M-pyrifera_M_contig101551.319.1 vs. uniprot
Match: A0A151ZH86_9MYCE (ATP-dependent DNA helicase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZH86_9MYCE)

HSP 1 Score: 122 bits (307), Expect = 6.080e-30
Identity = 60/128 (46.88%), Postives = 92/128 (71.88%), Query Frame = 1
Query:    1 LVDKAVEQMQERISQLVADSIRDQLYEKAVDCLKALRTGCVREEEADAYNAYLRKLRASHEGKRRDAFWQLVVAAGLTLIHEEECEDSPVTKAEAEEFLTAPS-QEAEDSVMEEAGTDEVDDLFDMVE 381
            LVDKA+  M+ RI QLV+DS++DQ Y+KA++C+K LR GC++E E+DA+N++L+++R  +E K++D FWQL+++  +TLI+EEE + S +T  E+ +FL   S Q+          TD VDDLFD +E
Sbjct:  614 LVDKAIALMRSRIQQLVSDSLKDQYYQKAIECIKELRVGCIKESESDAFNSFLKEIRQLYESKKKDDFWQLIMSNSITLINEEESDSSDITVEESIQFLDKKSKQQPISQPTTNQDTDSVDDLFDQIE 741          
BLAST of mRNA_M-pyrifera_M_contig101551.319.1 vs. uniprot
Match: A0A8J4PTU9_9MYCE (Ku domain-containing protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PTU9_9MYCE)

HSP 1 Score: 115 bits (288), Expect = 2.260e-27
Identity = 59/128 (46.09%), Postives = 87/128 (67.97%), Query Frame = 1
Query:    1 LVDKAVEQMQERISQLVADSIRDQLYEKAVDCLKALRTGCVREEEADAYNAYLRKLRASHEGKRRDAFWQLVVAAGLTLIHEEECEDSPVTKAEAEEFLTAPSQ-EAEDSVMEEAGTDEVDDLFDMVE 381
            LVDKA+  M+ERI QLV DS++DQ Y+KA+DC+K LR GC++E E D +N ++++L++S + K+RD FWQ++V   + LI  EE + S +T  EA  FL   S  ++    +  A TD +DDLFD +E
Sbjct:  621 LVDKAITLMKERILQLVNDSLKDQYYQKALDCVKELRLGCIKESEPDQFNTFIKELKSSFQSKKRDDFWQVLVEYNVNLISMEESDSSEITADEANSFLERKSSTQSIAQPVANANTDSIDDLFDQIE 748          
BLAST of mRNA_M-pyrifera_M_contig101551.319.1 vs. uniprot
Match: F1A270_DICPU (VWFA domain-containing protein n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F1A270_DICPU)

HSP 1 Score: 115 bits (287), Expect = 3.110e-27
Identity = 57/131 (43.51%), Postives = 87/131 (66.41%), Query Frame = 1
Query:    1 LVDKAVEQMQERISQLVADSIRDQLYEKAVDCLKALRTGCVREEEADAYNAYLRKLRASHEGKRRDAFWQLVVAA---GLTLIHEEECEDSPVTKAEAEEFLTAPSQEAED-SVMEEAGTDEVDDLFDMVE 381
            LVDKA+  M+ERI QLV DS+++Q Y+KA +C+K LR GC+RE EAD++N++++ +R+ +E K++D FW+ +       + LI E+EC+ S ++K EA EFL       +   +     TD VDDLFD +E
Sbjct:  639 LVDKAITLMKERIIQLVNDSLKEQYYQKAFECIKELRNGCIRESEADSFNSFIKDIRSLYENKKKDDFWKYITTNQPYAINLISEDECDSSSISKDEANEFLNRKQSNTQTPQINTNTNTDSVDDLFDQIE 769          
BLAST of mRNA_M-pyrifera_M_contig101551.319.1 vs. uniprot
Match: XRCC5_DICDI (X-ray repair cross-complementing protein 5 n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=XRCC5_DICDI)

HSP 1 Score: 115 bits (287), Expect = 3.130e-27
Identity = 59/135 (43.70%), Postives = 86/135 (63.70%), Query Frame = 1
Query:    1 LVDKAVEQMQERISQLVADSIRDQLYEKAVDCLKALRTGCVREEEADAYNAYLRKLRASHEGKRRDAFWQLVVA--------AGLTLIHEEECEDSPVTKAEAEEFLTAPSQEAEDSVMEEAGTDEVDDLFDMVE 381
            LVDKA+  M+ERI QLV DS+RDQ Y+KA +C+K LR GC+RE EA+ +N +L+ +R+  + K+RD FWQ + A          + LI ++EC+ S VT+ E ++FL    ++     +    TD VDDLFD +E
Sbjct:  662 LVDKAITLMKERILQLVNDSLRDQYYQKAFECIKELRVGCIRESEAEQFNGFLKDMRSLFQSKKRDDFWQYITADVTSILGEKSINLITQDECDSSEVTQEELDQFLDKKVKQFNPPPITNVNTDSVDDLFDQIE 796          
BLAST of mRNA_M-pyrifera_M_contig101551.319.1 vs. uniprot
Match: UPI000644DEE0 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644DEE0)

HSP 1 Score: 112 bits (279), Expect = 3.720e-26
Identity = 60/127 (47.24%), Postives = 87/127 (68.50%), Query Frame = 1
Query:    1 LVDKAVEQMQERISQLVADSIRDQLYEKAVDCLKALRTGCVREEEADAYNAYLRKLRASHEGKRRDAFWQLVVAAGLTLIHEEECEDSPVTKAEAEEFLTAPSQEAEDSVMEEAGTDEVDDLFDMVE 381
            LVDKAV  M++RI QLV DS++DQ Y+KA+DC+  LR GC++E E++ +N +L +LR  +EGKRRD FWQL+    +TLI   E +DS +++++A  FL +    A   V+    +D VDDLFD +E
Sbjct:  628 LVDKAVALMKQRIVQLVNDSLKDQFYQKALDCVVELRKGCIKESESEEFNTFLGELRDYYEGKRRDDFWQLLRVQSITLISTAESDDSGISESDALAFLGSKPTAAA-PVLSTPKSDSVDDLFDQIE 753          
BLAST of mRNA_M-pyrifera_M_contig101551.319.1 vs. uniprot
Match: D3BLJ3_POLPP (ATP-dependent DNA helicase n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BLJ3_POLPP)

HSP 1 Score: 111 bits (277), Expect = 6.770e-26
Identity = 57/127 (44.88%), Postives = 89/127 (70.08%), Query Frame = 1
Query:    1 LVDKAVEQMQERISQLVADSIRDQLYEKAVDCLKALRTGCVREEEADAYNAYLRKLRASHEGKRRDAFWQLVVAAGLTLIHEEECEDSPVTKAEAEEFLTAPSQEAEDSVMEEAGTDEVDDLFDMVE 381
            LVDKA+  M++RI QLV DS++DQ Y+KA++C+ ALR G ++E E+  +N +LR+LR  +E K+RD FWQL+V   + LI  +E +DS +T+ E++EFL +  +    +  + + +D VDDLFD +E
Sbjct:  573 LVDKAISLMKQRIVQLVNDSLKDQFYQKALECVVALRRGSIKESESLVFNQFLRELRDYYESKKRDDFWQLIVTNQIGLITNDESDDSEITEKESKEFLGSKRKTIAINNNQPSKSDSVDDLFDQIE 699          
BLAST of mRNA_M-pyrifera_M_contig101551.319.1 vs. uniprot
Match: F4PIU8_CAVFA (ATP-dependent DNA helicase n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PIU8_CAVFA)

HSP 1 Score: 110 bits (275), Expect = 1.290e-25
Identity = 58/128 (45.31%), Postives = 88/128 (68.75%), Query Frame = 1
Query:    1 LVDKAVEQMQERISQLVADSIRDQLYEKAVDCLKALRTGCVREEEADAYNAYLRKLRASHEGKRRDAFWQLVVAAGLTLIHEEECEDSPVTKAEAEEFLTAPSQEAED-SVMEEAGTDEVDDLFDMVE 381
            LVDKA+  M+ RI QLV DS++DQ Y+KA++C+ ALR GC++E E+DA+N +L++LR   E K+RD FWQL+V   +TLI+++E + S V++ E+++FL    +  +          D VDDLFD +E
Sbjct:  629 LVDKAINLMRSRIVQLVNDSLKDQFYQKALECVVALRQGCIKESESDAFNTFLQELRDYFESKKRDDFWQLLVTWKITLINDQESDTSSVSEEESKKFLGVKPKPVQPLQAPSNNKGDTVDDLFDQIE 756          
BLAST of mRNA_M-pyrifera_M_contig101551.319.1 vs. uniprot
Match: D2VUC7_NAEGR (Ku70/Ku80 beta-barrel domain-containing protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VUC7_NAEGR)

HSP 1 Score: 99.0 bits (245), Expect = 1.430e-21
Identity = 57/131 (43.51%), Postives = 87/131 (66.41%), Query Frame = 1
Query:    1 LVDKAVEQMQERISQLVADSIRDQLYEKAVDCLKALRTGCVREEEADAYNAYLRKLRASHEGKRRDAFW-QLVVAAGLTLIHEEECEDSPVTKAEAEEFLTAPSQEAEDSVMEEAGTDEV---DDLFDMVE 381
            +VDKA+++MQ  I +LV DSI DQ YEK + C+K LR GC+RE E + +N +L+KL+ S+   +R+ FW   +V   ++LI ++EC++S VT+ EA++FLT     A   V++E   DE    +DLFD +E
Sbjct:  646 MVDKAIQEMQVVIFKLVNDSIEDQYYEKVLACIKTLREGCIREAEPNQFNNFLKKLKQSYSKGKREDFWCSFIVQNNISLITQDECDESEVTEDEAKKFLTEAVIAA---VIQEESEDEKIGDNDLFDQLE 773          
BLAST of mRNA_M-pyrifera_M_contig101551.319.1 vs. uniprot
Match: A0A6A5C455_NAEFO (VWFA domain-containing protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5C455_NAEFO)

HSP 1 Score: 94.0 bits (232), Expect = 8.100e-20
Identity = 55/134 (41.04%), Postives = 86/134 (64.18%), Query Frame = 1
Query:    1 LVDKAVEQMQERISQLVADSIRDQLYEKAVDCLKALRTGCVREEEADAYNAYLRKLRASHEGKRRDAFWQ-LVVAAGLTLIHEEECEDSPVTKAEAEEFLT-----APSQE-AEDSVMEEAGTDEVDDLFDMVE 381
            LVDKA+++MQ  I +L+ DSI DQ YEK + C++ LR GC+RE E + +N +++ L+  +   +R+ FW+  +V   ++LI ++EC++S VT+ EA+ FLT     AP QE  ED  M +      +DLFD +E
Sbjct:  651 LVDKAIKEMQNVIFKLINDSIEDQYYEKVLSCVRVLREGCIRESEPELFNHFMKILKQQYSKGKREEFWKNYIVGNKISLITQDECDESEVTEEEAKNFLTQAVLAAPVQEEVEDEKMGD------NDLFDELE 778          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101551.319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S4IP85_9EUKA2.110e-3258.59Hypothetical protein n=1 Tax=Vannella sp. CB-2014 ... [more]
A0A151ZH86_9MYCE6.080e-3046.88ATP-dependent DNA helicase n=1 Tax=Tieghemostelium... [more]
A0A8J4PTU9_9MYCE2.260e-2746.09Ku domain-containing protein n=1 Tax=Polysphondyli... [more]
F1A270_DICPU3.110e-2743.51VWFA domain-containing protein n=1 Tax=Dictyosteli... [more]
XRCC5_DICDI3.130e-2743.70X-ray repair cross-complementing protein 5 n=1 Tax... [more]
UPI000644DEE03.720e-2647.24hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
D3BLJ3_POLPP6.770e-2644.88ATP-dependent DNA helicase n=1 Tax=Polysphondylium... [more]
F4PIU8_CAVFA1.290e-2545.31ATP-dependent DNA helicase n=1 Tax=Cavenderia fasc... [more]
D2VUC7_NAEGR1.430e-2143.51Ku70/Ku80 beta-barrel domain-containing protein n=... [more]
A0A6A5C455_NAEFO8.100e-2041.04VWFA domain-containing protein n=2 Tax=Naegleria T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101551contigM-pyrifera_M_contig101551:1..384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue7e-22
Seed eggNOG ortholog44689.DDB0232002
Preferred nameYKU80
KEGG koko:K10885
KEGG Pathwayko03450,map03450
KEGG ModuleM00297
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006325,GO:0006333,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007530,GO:0007531,GO:0007533,GO:0007535,GO:0008104,GO:0008150,GO:0008152,GO:0009266,GO:0009408,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0015074,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0022413,GO:0022414,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031503,GO:0031974,GO:0031981,GO:0032200,GO:0032502,GO:0032505,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034502,GO:0034613,GO:0034641,GO:0040029,GO:0042162,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043564,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045165,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051641,GO:0051716,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097695,GO:0098687,GO:1901360,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.Ku C terminal domain like
EggNOG OGs3XE5N@554915,KOG2326@1,KOG2326@2759
COG Functional cat.L
Best tax levelAmoebozoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Exons1
Model size384
Cds size360
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815513.8965771-UTR-M-pyrifera_M_contig101551:0..241622815513.8965771-UTR-M-pyrifera_M_contig101551:0..24Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig101551 1..24 +
1692277445.3386295-UTR-M-pyrifera_M_contig101551:0..241692277445.3386295-UTR-M-pyrifera_M_contig101551:0..24Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig101551 1..24 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815513.9080534-CDS-M-pyrifera_M_contig101551:24..3841622815513.9080534-CDS-M-pyrifera_M_contig101551:24..384Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101551 25..384 +
1692277445.359893-CDS-M-pyrifera_M_contig101551:24..3841692277445.359893-CDS-M-pyrifera_M_contig101551:24..384Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101551 25..384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101551.319.1prot_M-pyrifera_M_contig101551.319.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101551 25..384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101551.319.1

>prot_M-pyrifera_M_contig101551.319.1 ID=prot_M-pyrifera_M_contig101551.319.1|Name=mRNA_M-pyrifera_M_contig101551.319.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=120bp
MQERISQLVADSIRDQLYEKAVDCLKALRTGCVREEEADAYNAYLRKLRA
SHEGKRRDAFWQLVVAAGLTLIHEEECEDSPVTKAEAEEFLTAPSQEAED
SVMEEAGTDEVDDLFDMVE*
back to top

mRNA from alignment at M-pyrifera_M_contig101551:1..384+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101551.319.1 ID=mRNA_M-pyrifera_M_contig101551.319.1|Name=mRNA_M-pyrifera_M_contig101551.319.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig101551:1..384+ (Macrocystis pyrifera P11B4 male)
CTCGTGGATAAGGCAGTGGAGCAGATGCAGGAGAGAATCTCCCAGCTGGT CGCCGACTCCATCCGCGATCAGCTCTACGAGAAGGCAGTCGACTGCCTCA AGGCTCTGCGCACTGGCTGTGTTCGAGAGGAGGAGGCAGACGCATACAAC GCTTACCTGCGCAAGCTCCGAGCCTCGCATGAGGGCAAGCGTCGCGATGC CTTCTGGCAGTTGGTCGTCGCCGCTGGCCTCACGCTCATCCACGAGGAAG AATGCGAGGACAGCCCTGTCACCAAGGCAGAGGCAGAGGAGTTCCTCACT GCTCCCTCCCAGGAGGCAGAGGACTCTGTCATGGAGGAGGCGGGCACCGA CGAGGTGGACGACCTCTTCGACATGGTAGAGTAG
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig101551:1..384+

>mRNA_M-pyrifera_M_contig101551.319.1 ID=mRNA_M-pyrifera_M_contig101551.319.1|Name=mRNA_M-pyrifera_M_contig101551.319.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=720bp|location=Sequence derived from alignment at M-pyrifera_M_contig101551:1..384+ (Macrocystis pyrifera P11B4 male)
ATGCAGGAGAGAATCTCCCAGCTGGTCGCCGACTCCATCCGCGATCAGCT
CTACGAGAAGGCAGTCGACTGCCTCAAGGCTCTGCGCACTGGCTGTGTTC
GAGAGGAGGAGGCAGACGCATACAACGCTTACCTGCGCAAGCTCCGAGCC
TCGCATGAGGGCAAGCGTCGCGATGCCTTCTGGCAGTTGGTCGTCGCCGC
TGGCCTCACGCTCATCCACGAGGAAGAATGCGAGGACAGCCCTGTCACCA
AGGCAGAGGCAGAGGAGTTCCTCACTGCTCCCTCCCAGGAGGCAGAGGAC
TCTGTCATGGAGGAGGCGGGCACCGACGAGGTGGACGACCTCTTCGACAT
GGTAGAGTAGATGCAGGAGAGAATCTCCCAGCTGGTCGCCGACTCCATCC
GCGATCAGCTCTACGAGAAGGCAGTCGACTGCCTCAAGGCTCTGCGCACT
GGCTGTGTTCGAGAGGAGGAGGCAGACGCATACAACGCTTACCTGCGCAA
GCTCCGAGCCTCGCATGAGGGCAAGCGTCGCGATGCCTTCTGGCAGTTGG
TCGTCGCCGCTGGCCTCACGCTCATCCACGAGGAAGAATGCGAGGACAGC
CCTGTCACCAAGGCAGAGGCAGAGGAGTTCCTCACTGCTCCCTCCCAGGA
GGCAGAGGACTCTGTCATGGAGGAGGCGGGCACCGACGAGGTGGACGACC
TCTTCGACATGGTAGAGTAG
back to top