mRNA_M-pyrifera_M_contig115305.3185.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115305.3185.1
Unique NamemRNA_M-pyrifera_M_contig115305.3185.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig115305.3185.1 vs. uniprot
Match: A0A5N5TN12_9CRUS (Centrin-2 n=2 Tax=Armadillidium TaxID=13346 RepID=A0A5N5TN12_9CRUS)

HSP 1 Score: 80.1 bits (196), Expect = 1.390e-16
Identity = 44/112 (39.29%), Postives = 70/112 (62.50%), Query Frame = 1
Query:    4 GRIDAKEVQFALSALGWYPEKEKVQQLLNKAKKKGHATLSYDDFLDVARPLLVEQKERERMEHAFRLF---SGGKDRITATDLKRVADTCGEDLDSEELHEMIGCADPTAKG 330
            G ID+KE++ A+ ALG+ P+KE+++++L +   +G   + Y+DF  +    + ++  +E +  AF+LF   S GK  I+  +LKRVA+T GE+L  EEL EMI  AD    G
Sbjct:   46 GSIDSKELKVAMRALGFEPKKEEIKKILGEVDSQGSGRIKYEDFTRIMADKMADKDVKEEILKAFKLFDNDSTGK--ISFKNLKRVAETLGENLTDEELQEMIDEADRDGDG 155          
BLAST of mRNA_M-pyrifera_M_contig115305.3185.1 vs. uniprot
Match: K8YSR4_NANGC (Caltractin (Fragment) n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8YSR4_NANGC)

HSP 1 Score: 79.7 bits (195), Expect = 1.460e-16
Identity = 43/102 (42.16%), Postives = 63/102 (61.76%), Query Frame = 1
Query:    4 GRIDAKEVQFALSALGWYPEKEKVQQLLNKAKKKGHATLSYDDFLDVARPLLVEQKERERMEHAFRLFSG-GKDRITATDLKRVADTCGEDLDSEELHEMIG 306
            G ID +E++ A  ALG+  +K +++  L    K+  AT++YD+FLD+A P +  + ERE ++  F LF   G   I+  +LKRVA   GE+L  EEL EMIG
Sbjct:   54 GTIDVRELKAAFRALGFQVKKAEIRTFLQTIDKEMAATVTYDEFLDMAAPKVANRDEREEIQKVFALFDDDGTGAISFRNLKRVATELGENLTDEELQEMIG 155          
BLAST of mRNA_M-pyrifera_M_contig115305.3185.1 vs. uniprot
Match: A0A7S2DRM7_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DRM7_9EUKA)

HSP 1 Score: 77.8 bits (190), Expect = 1.560e-15
Identity = 40/110 (36.36%), Postives = 67/110 (60.91%), Query Frame = 1
Query:    4 GRIDAKEVQFALSALGWYPEKEKVQQLLNKAKKKGHATLSYDDFLDVARPLLVEQKERERMEHAFRLF-SGGKDRITATDLKRVADTCGEDLDSEELHEMIGCADPTAKG 330
            G IDA+E+   + ALG  P KE +++L+  + K     L +D +L++    + E+  +E ++ AFRLF S GK  + A+DL+R+AD  GE ++ +E+ +MI  AD +  G
Sbjct:   58 GTIDAEELLVVMRALGHEPRKEDLKRLVTDSDKHNTGQLDFDGYLNIILNKMAERPSQEDLQKAFRLFDSQGKKTVDASDLRRIADQIGEQIEDDEIADMIYNADTSGTG 167          
BLAST of mRNA_M-pyrifera_M_contig115305.3185.1 vs. uniprot
Match: A0A5S6QRW7_TRIMR (Uncharacterized protein n=1 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QRW7_TRIMR)

HSP 1 Score: 70.9 bits (172), Expect = 4.430e-13
Identity = 41/112 (36.61%), Postives = 63/112 (56.25%), Query Frame = 1
Query:    1 AGRIDAKEVQFALSALGWYPEKEKVQQLLNKAKKKGHATLSYDDFLDVARPLLVEQKERERMEHAFRLFSGGK-DRITATDLKRVADTCGEDLDSEELHEMIGCADPTAKGF 333
            +G++D K ++FA+ ALG+ P+ E+V+ +L++   +G   +S  +FLD+      E   R  +  A+ +F GG   +IT  DLKRVA   GE +  EEL EMI   D    G 
Sbjct:   39 SGKMDVKNLKFAMRALGFEPKAEEVKVVLSEFNIEGE--ISSAEFLDIVAAKFAENGSRNEIMKAYTMFIGGSCGKITFDDLKRVAKELGESISDEELREMIEEGDYNKDGM 148          
BLAST of mRNA_M-pyrifera_M_contig115305.3185.1 vs. uniprot
Match: L7MG57_RHIPC (Putative centrin-1 (Fragment) n=2 Tax=Ixodidae TaxID=6939 RepID=L7MG57_RHIPC)

HSP 1 Score: 70.5 bits (171), Expect = 1.030e-12
Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = 1
Query:    1 AGRIDAKEVQFALSALGWYPEKEKVQQLLNKAKKKGHATLSYDDFLDVARPLLVEQKERERMEHAFRLFS-GGKDRITATDLKRVADTCGEDLDSEELHEMIGCADPTAKG 330
            +G ++AK+++FA+ ALG+ P KE+V++LL +  K+    ++ +DF++V    L E+   E +  AF+LF      +I+  +LK VA    E+L  EEL EMI  AD    G
Sbjct:   63 SGFMEAKDLKFAMRALGFEPRKEEVKKLLAEIDKQETGKIAREDFMNVMATRLAEKDINEEIMKAFQLFDEDNTGKISFKNLKSVAKQLSENLSDEELQEMINEADRDGDG 173          
BLAST of mRNA_M-pyrifera_M_contig115305.3185.1 vs. uniprot
Match: A0A224YV35_9ACAR (Centrin-1 n=1 Tax=Rhipicephalus zambeziensis TaxID=60191 RepID=A0A224YV35_9ACAR)

HSP 1 Score: 70.5 bits (171), Expect = 1.030e-12
Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = 1
Query:    1 AGRIDAKEVQFALSALGWYPEKEKVQQLLNKAKKKGHATLSYDDFLDVARPLLVEQKERERMEHAFRLFS-GGKDRITATDLKRVADTCGEDLDSEELHEMIGCADPTAKG 330
            +G ++AK+++FA+ ALG+ P KE+V++LL +  K+    ++ +DF++V    L E+   E +  AF+LF      +I+  +LK VA    E+L  EEL EMI  AD    G
Sbjct:   63 SGFMEAKDLKFAMRALGFEPRKEEVKKLLAEIDKQETGKIAREDFMNVMATRLAEKDINEEIMKAFQLFDEDNTGKISFKNLKSVAKQLSENLSDEELQEMINEADRDGDG 173          
BLAST of mRNA_M-pyrifera_M_contig115305.3185.1 vs. uniprot
Match: L7LV92_RHIPC (Putative centrin-1 n=11 Tax=Ixodidae TaxID=6939 RepID=L7LV92_RHIPC)

HSP 1 Score: 70.5 bits (171), Expect = 1.320e-12
Identity = 41/111 (36.94%), Postives = 66/111 (59.46%), Query Frame = 1
Query:    1 AGRIDAKEVQFALSALGWYPEKEKVQQLLNKAKKKGHATLSYDDFLDVARPLLVEQKERERMEHAFRLFS-GGKDRITATDLKRVADTCGEDLDSEELHEMIGCADPTAKG 330
            +G ++AK+++FA+ ALG+ P KE+V++LL +  K+    ++ +DF++V    L E+   E +  AF+LF      +I+  +LK VA    E+L  EEL EMI  AD    G
Sbjct:   41 SGFMEAKDLKFAMRALGFEPRKEEVKKLLAEIDKQETGKIAREDFMNVMATRLAEKDINEEIMKAFQLFDEDNTGKISFKNLKSVAKQLSENLSDEELQEMINEADRDGDG 151          
BLAST of mRNA_M-pyrifera_M_contig115305.3185.1 vs. uniprot
Match: A0A7M7KGR3_VARDE (Uncharacterized protein n=2 Tax=Varroa TaxID=62624 RepID=A0A7M7KGR3_VARDE)

HSP 1 Score: 62.0 bits (149), Expect = 1.170e-9
Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = 1
Query:   10 IDAKEVQFALSALGWYPEKEKVQQLLNKAKKKG--HATLSYDDFLDVARPLLVEQKERERMEHAFRLFSG-GKDRITATDLKRVADTCGEDLDSEELHEMIGCADPTAKGF 333
            + AKE++FA+ ALG  P KE+V++LL +  K+    A L+  +F +V R  L E    E ++ AF+LF       I+  DL+RVA+  G ++  EEL +MI  AD    G 
Sbjct:   41 LPAKELKFAMRALGLEPRKEEVKKLLTELGKQDSPQARLTLTEFEEVIRTRLREDPNDETLK-AFKLFDERNTGMISLEDLQRVANELGAEISEEELRQMIEEADNDGDGL 150          
BLAST of mRNA_M-pyrifera_M_contig115305.3185.1 vs. uniprot
Match: A0A482SIZ7_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SIZ7_9ARCH)

HSP 1 Score: 60.8 bits (146), Expect = 3.910e-9
Identity = 35/98 (35.71%), Postives = 58/98 (59.18%), Query Frame = 1
Query:    4 GRIDAKEVQFALSALGWYPEKEKVQQL-LNKAKKKGHATLSYDDFLDVARPLLVEQKERERMEHAFRLFSGGKD-RITATDLKRVADTCGEDLDSEEL 291
            G ID +E++ A  ALG+  +K +++QL ++  K    AT+++D+F+++  P ++ +  RE +   F LF       IT  +LKRVA   GE+L  EEL
Sbjct:   53 GNIDVRELKAAFRALGFQVKKAEIRQLFIDMDKDLSSATVTFDEFVEMVTPRMLNRDSREEILKVFALFDDDNSGSITFKNLKRVAAELGENLTDEEL 150          
BLAST of mRNA_M-pyrifera_M_contig115305.3185.1 vs. uniprot
Match: A0A0L0HPV9_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HPV9_SPIPD)

HSP 1 Score: 61.6 bits (148), Expect = 4.620e-9
Identity = 37/136 (27.21%), Postives = 64/136 (47.06%), Query Frame = 1
Query:    1 AGRIDAKEVQFALSALGWYPEKEKVQQLLNKAKKKGHATLSYDDFLDVARPLLVEQKERERMEHAFRLFSGG--------------------------KDRITATDLKRVADTCGEDLDSEELHEMIGCADPTAKG 330
            +G I  KE + A+ ALG+ P  ++V+++L +    G  T+ +++FL +    + ++  RE M   F LF+                              RI+A+D++RVA+  GE L  +E+ EM+  AD    G
Sbjct:   90 SGEISGKEWRVAMRALGFEPSNDEVKRMLKEMDDNGSGTIDFEEFLGLMERRMADKYAREEMRKVFELFTKPDLSIQRSRSTARTSPLRTGTGVAKHPNQRISASDIRRVANLVGERLTEDEIKEMLEEADRDGDG 225          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115305.3185.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A5N5TN12_9CRUS1.390e-1639.29Centrin-2 n=2 Tax=Armadillidium TaxID=13346 RepID=... [more]
K8YSR4_NANGC1.460e-1642.16Caltractin (Fragment) n=3 Tax=Monodopsidaceae TaxI... [more]
A0A7S2DRM7_9EUKA1.560e-1536.36Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A5S6QRW7_TRIMR4.430e-1336.61Uncharacterized protein n=1 Tax=Trichuris muris Ta... [more]
L7MG57_RHIPC1.030e-1236.94Putative centrin-1 (Fragment) n=2 Tax=Ixodidae Tax... [more]
A0A224YV35_9ACAR1.030e-1236.94Centrin-1 n=1 Tax=Rhipicephalus zambeziensis TaxID... [more]
L7LV92_RHIPC1.320e-1236.94Putative centrin-1 n=11 Tax=Ixodidae TaxID=6939 Re... [more]
A0A7M7KGR3_VARDE1.170e-937.84Uncharacterized protein n=2 Tax=Varroa TaxID=62624... [more]
A0A482SIZ7_9ARCH3.910e-935.71Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A0L0HPV9_SPIPD4.620e-927.21Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115305contigM-pyrifera_M_contig115305:161..493 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score84.7
Seed ortholog evalue2.9e-14
Seed eggNOG ortholog109478.XP_005861674.1
Preferred nameCETN1
KEGG koko:K16465
Hectar predicted targeting categoryother localisation
GOsGO:0000922,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005819,GO:0005856,GO:0005929,GO:0006950,GO:0008017,GO:0008092,GO:0008150,GO:0009266,GO:0009408,GO:0009628,GO:0009987,GO:0015630,GO:0015631,GO:0031683,GO:0032391,GO:0032795,GO:0033554,GO:0034605,GO:0035869,GO:0042995,GO:0043005,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044877,GO:0050896,GO:0051716,GO:0097458,GO:0097730,GO:0097731,GO:0097733,GO:0120025,GO:0120038
EggNOG free text desc.EF-hand domain
EggNOG OGs38C1B@33154,3BB2J@33208,3D0FW@33213,3JA19@40674,482AE@7711,48XNM@7742,4KPQK@9397,COG5126@1,KOG0028@2759
COG Functional cat.T
Best tax levelChiroptera
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size333
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815669.3248515-CDS-M-pyrifera_M_contig115305:160..4931622815669.3248515-CDS-M-pyrifera_M_contig115305:160..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115305 161..493 -
1692277513.5140502-CDS-M-pyrifera_M_contig115305:160..4931692277513.5140502-CDS-M-pyrifera_M_contig115305:160..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115305 161..493 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115305.3185.1prot_M-pyrifera_M_contig115305.3185.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115305 161..493 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115305.3185.1

>prot_M-pyrifera_M_contig115305.3185.1 ID=prot_M-pyrifera_M_contig115305.3185.1|Name=mRNA_M-pyrifera_M_contig115305.3185.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=111bp
AGRIDAKEVQFALSALGWYPEKEKVQQLLNKAKKKGHATLSYDDFLDVAR
PLLVEQKERERMEHAFRLFSGGKDRITATDLKRVADTCGEDLDSEELHEM
IGCADPTAKGF
back to top

mRNA from alignment at M-pyrifera_M_contig115305:161..493-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115305.3185.1 ID=mRNA_M-pyrifera_M_contig115305.3185.1|Name=mRNA_M-pyrifera_M_contig115305.3185.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=333bp|location=Sequence derived from alignment at M-pyrifera_M_contig115305:161..493- (Macrocystis pyrifera P11B4 male)
GCAGGGCGGATTGATGCCAAGGAGGTACAGTTTGCTCTGAGTGCGCTCGG TTGGTACCCCGAGAAGGAGAAAGTACAGCAGCTGCTCAACAAGGCCAAGA AGAAGGGCCATGCAACGCTCTCCTACGATGACTTCCTCGACGTTGCTCGC CCTCTTCTCGTGGAGCAGAAGGAGAGAGAGAGAATGGAGCATGCCTTTAG GCTTTTCAGCGGTGGGAAGGACAGGATCACTGCCACCGATCTGAAACGGG TGGCGGACACTTGTGGAGAGGACCTCGATAGCGAAGAGCTCCATGAAATG ATTGGGTGTGCCGACCCAACCGCAAAGGGCTTT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig115305:161..493-

>mRNA_M-pyrifera_M_contig115305.3185.1 ID=mRNA_M-pyrifera_M_contig115305.3185.1|Name=mRNA_M-pyrifera_M_contig115305.3185.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=666bp|location=Sequence derived from alignment at M-pyrifera_M_contig115305:161..493- (Macrocystis pyrifera P11B4 male)
GCAGGGCGGATTGATGCCAAGGAGGTACAGTTTGCTCTGAGTGCGCTCGG
TTGGTACCCCGAGAAGGAGAAAGTACAGCAGCTGCTCAACAAGGCCAAGA
AGAAGGGCCATGCAACGCTCTCCTACGATGACTTCCTCGACGTTGCTCGC
CCTCTTCTCGTGGAGCAGAAGGAGAGAGAGAGAATGGAGCATGCCTTTAG
GCTTTTCAGCGGTGGGAAGGACAGGATCACTGCCACCGATCTGAAACGGG
TGGCGGACACTTGTGGAGAGGACCTCGATAGCGAAGAGCTCCATGAAATG
ATTGGGTGTGCCGACCCAACCGCAAAGGGCTTTGCAGGGCGGATTGATGC
CAAGGAGGTACAGTTTGCTCTGAGTGCGCTCGGTTGGTACCCCGAGAAGG
AGAAAGTACAGCAGCTGCTCAACAAGGCCAAGAAGAAGGGCCATGCAACG
CTCTCCTACGATGACTTCCTCGACGTTGCTCGCCCTCTTCTCGTGGAGCA
GAAGGAGAGAGAGAGAATGGAGCATGCCTTTAGGCTTTTCAGCGGTGGGA
AGGACAGGATCACTGCCACCGATCTGAAACGGGTGGCGGACACTTGTGGA
GAGGACCTCGATAGCGAAGAGCTCCATGAAATGATTGGGTGTGCCGACCC
AACCGCAAAGGGCTTT
back to top