mRNA_M-pyrifera_M_contig115061.3136.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig115061.3136.1
Unique NamemRNA_M-pyrifera_M_contig115061.3136.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig115061.3136.1 vs. uniprot
Match: UPI0014716911 (echinoderm microtubule-associated protein-like 6 n=1 Tax=Thalassophryne amazonica TaxID=390379 RepID=UPI0014716911)

HSP 1 Score: 55.1 bits (131), Expect = 1.720e-5
Identity = 61/198 (30.81%), Postives = 86/198 (43.43%), Query Frame = 1 
Query:    7 GWDGSVMLWDGDGEKVGEVR-------NPDGKALYL-----VRFSPDGH-HVLCGGNGGWTSPVILSVP-DLRVVGECRGGGGTVYGGAWMPDGETVVAGGADDVMRVWGKEGGY--VACEKRMRLGRVFSVDVHPDGREYAVGFDEGKNVVIFSVANHEELRRIAIPDEVRSARYSPDGGR-LAVAHYSGLVMVDSV 549
            G DG V LWD   ++  +         +P  K L L     +R    GH H+L G   G    +  + P  L V G   G    V+G A  P          D  +R+W     +  VA  K  R GR  +    PDG+E AVG ++G  +V+ +    + L      D V   R+SPD G+ LAVA + GLV + +V
Sbjct:  812 GKDGMVALWDDMFDRCLKTYAIKRAALSPTSKGLLLEDNPSIRAITLGHGHILVGTKNGEVLEIDKTGPMTLLVQGHMEG---EVWGVAAHPLLPVCATVSDDKTLRLWEISASHRMVAVRKLKRGGRCCAFS--PDGKELAVGLNDGGVIVVNADTLEDLLTFHHRRDTVSDVRFSPDSGKYLAVASHDGLVDIYNV 1004
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig115061.3136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00147169111.720e-530.81echinoderm microtubule-associated protein-like 6 n... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig115061contigM-pyrifera_M_contig115061:1..564 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size564
Cds size540
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815666.884475-UTR-M-pyrifera_M_contig115061:0..241622815666.884475-UTR-M-pyrifera_M_contig115061:0..24Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115061 1..24 +
1692277512.426024-UTR-M-pyrifera_M_contig115061:0..241692277512.426024-UTR-M-pyrifera_M_contig115061:0..24Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig115061 1..24 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815666.8952847-CDS-M-pyrifera_M_contig115061:24..5641622815666.8952847-CDS-M-pyrifera_M_contig115061:24..564Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115061 25..564 +
1692277512.4357145-CDS-M-pyrifera_M_contig115061:24..5641692277512.4357145-CDS-M-pyrifera_M_contig115061:24..564Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig115061 25..564 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig115061.3136.1prot_M-pyrifera_M_contig115061.3136.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig115061 25..564 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig115061.3136.1

>prot_M-pyrifera_M_contig115061.3136.1 ID=prot_M-pyrifera_M_contig115061.3136.1|Name=mRNA_M-pyrifera_M_contig115061.3136.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=180bp
MLWDGDGEKVGEVRNPDGKALYLVRFSPDGHHVLCGGNGGWTSPVILSVP
DLRVVGECRGGGGTVYGGAWMPDGETVVAGGADDVMRVWGKEGGYVACEK
RMRLGRVFSVDVHPDGREYAVGFDEGKNVVIFSVANHEELRRIAIPDEVR
SARYSPDGGRLAVAHYSGLVMVDSVSGEEL
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mRNA from alignment at M-pyrifera_M_contig115061:1..564+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig115061.3136.1 ID=mRNA_M-pyrifera_M_contig115061.3136.1|Name=mRNA_M-pyrifera_M_contig115061.3136.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=564bp|location=Sequence derived from alignment at M-pyrifera_M_contig115061:1..564+ (Macrocystis pyrifera P11B4 male)
TCATGTGGGTGGGATGGTAGTGTGATGCTGTGGGATGGTGATGGTGAGAA
GGTGGGGGAGGTGAGGAATCCAGATGGAAAGGCTCTGTACCTCGTTCGTT
TCTCTCCTGATGGTCATCATGTGTTATGTGGTGGGAATGGAGGTTGGACA
TCTCCAGTGATTCTGTCAGTGCCTGATTTGAGGGTGGTGGGAGAGTGTCG
TGGAGGAGGTGGGACTGTGTATGGTGGTGCTTGGATGCCTGATGGTGAGA
CAGTTGTTGCTGGTGGTGCTGATGATGTGATGCGTGTTTGGGGCAAGGAA
GGTGGTTACGTGGCGTGTGAGAAGAGGATGCGGTTGGGAAGGGTGTTTAG
TGTGGATGTGCATCCTGATGGGAGGGAGTATGCAGTGGGGTTTGATGAAG
GTAAGAATGTAGTGATTTTCTCTGTGGCGAATCATGAGGAGTTGCGTCGT
ATCGCCATTCCTGACGAAGTGCGCAGTGCCCGTTACAGTCCTGATGGTGG
TAGATTGGCAGTGGCACATTACTCTGGATTGGTGATGGTGGATAGTGTGA
GTGGTGAGGAGTTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig115061:1..564+

>mRNA_M-pyrifera_M_contig115061.3136.1 ID=mRNA_M-pyrifera_M_contig115061.3136.1|Name=mRNA_M-pyrifera_M_contig115061.3136.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1080bp|location=Sequence derived from alignment at M-pyrifera_M_contig115061:1..564+ (Macrocystis pyrifera P11B4 male)
ATGCTGTGGGATGGTGATGGTGAGAAGGTGGGGGAGGTGAGGAATCCAGA
TGGAAAGGCTCTGTACCTCGTTCGTTTCTCTCCTGATGGTCATCATGTGT
TATGTGGTGGGAATGGAGGTTGGACATCTCCAGTGATTCTGTCAGTGCCT
GATTTGAGGGTGGTGGGAGAGTGTCGTGGAGGAGGTGGGACTGTGTATGG
TGGTGCTTGGATGCCTGATGGTGAGACAGTTGTTGCTGGTGGTGCTGATG
ATGTGATGCGTGTTTGGGGCAAGGAAGGTGGTTACGTGGCGTGTGAGAAG
AGGATGCGGTTGGGAAGGGTGTTTAGTGTGGATGTGCATCCTGATGGGAG
GGAGTATGCAGTGGGGTTTGATGAAGGTAAGAATGTAGTGATTTTCTCTG
TGGCGAATCATGAGGAGTTGCGTCGTATCGCCATTCCTGACGAAGTGCGC
AGTGCCCGTTACAGTCCTGATGGTGGTAGATTGGCAGTGGCACATTACTC
TGGATTGGTGATGGTGGATAGTGTGAGTGGTGAGGAGTTGATGCTGTGGG
ATGGTGATGGTGAGAAGGTGGGGGAGGTGAGGAATCCAGATGGAAAGGCT
CTGTACCTCGTTCGTTTCTCTCCTGATGGTCATCATGTGTTATGTGGTGG
GAATGGAGGTTGGACATCTCCAGTGATTCTGTCAGTGCCTGATTTGAGGG
TGGTGGGAGAGTGTCGTGGAGGAGGTGGGACTGTGTATGGTGGTGCTTGG
ATGCCTGATGGTGAGACAGTTGTTGCTGGTGGTGCTGATGATGTGATGCG
TGTTTGGGGCAAGGAAGGTGGTTACGTGGCGTGTGAGAAGAGGATGCGGT
TGGGAAGGGTGTTTAGTGTGGATGTGCATCCTGATGGGAGGGAGTATGCA
GTGGGGTTTGATGAAGGTAAGAATGTAGTGATTTTCTCTGTGGCGAATCA
TGAGGAGTTGCGTCGTATCGCCATTCCTGACGAAGTGCGCAGTGCCCGTT
ACAGTCCTGATGGTGGTAGATTGGCAGTGGCACATTACTCTGGATTGGTG
ATGGTGGATAGTGTGAGTGGTGAGGAGTTG
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