mRNA_M-pyrifera_M_contig114996.3116.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114996.3116.1
Unique NamemRNA_M-pyrifera_M_contig114996.3116.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114996.3116.1 vs. uniprot
Match: A0A815E3P1_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A815E3P1_9BILA)

HSP 1 Score: 92.4 bits (228), Expect = 2.680e-20
Identity = 39/68 (57.35%), Postives = 54/68 (79.41%), Query Frame = 1
Query:    1 IMQYPESFYCRLTHEVMRDPVIDPEGISYEREAILSWLSQEQTSPVTRSALTVAQLAPNRALLDTIRQ 204
            +++YP +F C +TH+VM DPV+DP+G SYER AI++WLS+E TSP+T+ +LTVA L PN+AL   I Q
Sbjct:    6 VVKYPATFICPITHDVMEDPVMDPDGNSYERGAIINWLSRESTSPITKKSLTVADLVPNQALAAAIEQ 73          
BLAST of mRNA_M-pyrifera_M_contig114996.3116.1 vs. uniprot
Match: A0A815MB58_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A815MB58_9BILA)

HSP 1 Score: 89.4 bits (220), Expect = 5.030e-20
Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 1
Query:    1 IMQYPESFYCRLTHEVMRDPVIDPEGISYEREAILSWLSQEQTSPVTRSALTVAQLAPNRALLDTIRQ 204
            +++YPE F C +THEVM DPV+DP+G SYER AI+  LS++ TSP+TR+ LTV  L PN+ LL+ I Q
Sbjct:    6 VVKYPERFICPITHEVMEDPVMDPDGNSYERRAIIHRLSRDSTSPITRNPLTVGDLVPNQILLEAIEQ 73          
BLAST of mRNA_M-pyrifera_M_contig114996.3116.1 vs. uniprot
Match: A0A6B2LVR3_9EUKA (U-box domain-containing protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LVR3_9EUKA)

HSP 1 Score: 82.0 bits (201), Expect = 5.030e-19
Identity = 36/66 (54.55%), Postives = 50/66 (75.76%), Query Frame = 1
Query:    7 QYPESFYCRLTHEVMRDPVIDPEGISYEREAILSWLSQEQTSPVTRSALTVAQLAPNRALLDTIRQ 204
            + PESF C +T E M+DPVIDP+G SYER AI +W+ Q+ TSP++R  L +A L PNRAL ++I++
Sbjct:   10 EVPESFLCPITQEPMKDPVIDPDGNSYERTAIEAWIRQKGTSPISRQPLALADLRPNRALRESIQE 75          
BLAST of mRNA_M-pyrifera_M_contig114996.3116.1 vs. uniprot
Match: L8H120_ACACA (von Willebrand factor type A domain containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H120_ACACA)

HSP 1 Score: 87.4 bits (215), Expect = 1.540e-18
Identity = 40/63 (63.49%), Postives = 47/63 (74.60%), Query Frame = 1
Query:   10 YPESFYCRLTHEVMRDPVIDPEGISYEREAILSWLSQEQTSPVTRSALTVAQLAPNRALLDTI 198
            +  SF C LTHEVM DPV+DPEG SYER AI +WL Q  TSP+TR+ L +A LAPNRAL + I
Sbjct:   18 FSASFICPLTHEVMTDPVVDPEGNSYERAAITAWLQQHDTSPITRAPLALADLAPNRALRNAI 80          
BLAST of mRNA_M-pyrifera_M_contig114996.3116.1 vs. uniprot
Match: A0A7S0QWT4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0QWT4_9CRYP)

HSP 1 Score: 81.3 bits (199), Expect = 1.780e-18
Identity = 40/66 (60.61%), Postives = 46/66 (69.70%), Query Frame = 1
Query:    7 QYPESFYCRLTHEVMRDPVIDPEGISYEREAILSWLSQEQTSPVTRSALTVAQLAPNRALLDTIRQ 204
            Q P SF C LT E+M DPVIDPEG S+EREAI  WL    TSP+TRS LT  +LA NRAL + I +
Sbjct:    5 QPPSSFTCPLTFEIMTDPVIDPEGNSFEREAIERWLRTHNTSPITRSRLTPDRLAANRALREAIEE 70          
BLAST of mRNA_M-pyrifera_M_contig114996.3116.1 vs. uniprot
Match: A0A820IK77_9BILA (Hypothetical protein n=1 Tax=Rotaria magnacalcarata TaxID=392030 RepID=A0A820IK77_9BILA)

HSP 1 Score: 84.7 bits (208), Expect = 7.620e-18
Identity = 38/64 (59.38%), Postives = 48/64 (75.00%), Query Frame = 1
Query:   13 PESFYCRLTHEVMRDPVIDPEGISYEREAILSWLSQEQTSPVTRSALTVAQLAPNRALLDTIRQ 204
            P SF C +THE+M DPVIDPEG SYER AI SWL Q++ SP+TR+ L ++ L PNRAL  +I +
Sbjct:    5 PSSFLCPITHELMTDPVIDPEGNSYERSAIESWLHQQRNSPITRTQLNMSDLRPNRALRASIEE 68          
BLAST of mRNA_M-pyrifera_M_contig114996.3116.1 vs. uniprot
Match: A0A816EXJ9_ADIRI (Hypothetical protein (Fragment) n=1 Tax=Adineta ricciae TaxID=249248 RepID=A0A816EXJ9_ADIRI)

HSP 1 Score: 80.1 bits (196), Expect = 1.630e-17
Identity = 39/68 (57.35%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    4 MQYPES-FYCRLTHEVMRDPVIDPEGISYEREAILSWLSQEQTSPVTRSALTVAQLAPNRALLDTIRQ 204
            M  P S F C +THE+M DPVIDP+G SYER AI +WLS   TSP+TR+ LTV  L PNRAL   + +
Sbjct:    1 MAEPSSTFICPITHELMNDPVIDPDGNSYERTAIEAWLSSHGTSPITRAPLTVTDLRPNRALKAAVSE 68          
BLAST of mRNA_M-pyrifera_M_contig114996.3116.1 vs. uniprot
Match: A0A820LET2_9BILA (Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820LET2_9BILA)

HSP 1 Score: 82.8 bits (203), Expect = 3.750e-17
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 1
Query:   13 PESFYCRLTHEVMRDPVIDPEGISYEREAILSWLSQEQTSPVTRSALTVAQLAPNRALLDTIRQ 204
            P SF C +THE+M DPVIDP+G SYER AI  WL Q  TSP+TR+ L +  L PNRAL ++I +
Sbjct:    5 PSSFLCPITHELMTDPVIDPDGNSYERSAIEDWLRQHSTSPITRTTLHLNDLRPNRALRESIEE 68          
BLAST of mRNA_M-pyrifera_M_contig114996.3116.1 vs. uniprot
Match: A0A819J6S0_9BILA (Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A819J6S0_9BILA)

HSP 1 Score: 82.8 bits (203), Expect = 6.470e-17
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 1
Query:   13 PESFYCRLTHEVMRDPVIDPEGISYEREAILSWLSQEQTSPVTRSALTVAQLAPNRALLDTIRQ 204
            P SF C +THE+M DPVIDP+G SYER AI  WL Q  TSP+TR+ L +  L PNRAL ++I +
Sbjct:    5 PSSFLCPITHELMTDPVIDPDGNSYERSAIEDWLRQHSTSPITRTTLHLNDLRPNRALRESIEE 68          
BLAST of mRNA_M-pyrifera_M_contig114996.3116.1 vs. uniprot
Match: A0A819MVC8_9BILA (Hypothetical protein n=3 Tax=Rotaria sordida TaxID=392033 RepID=A0A819MVC8_9BILA)

HSP 1 Score: 82.4 bits (202), Expect = 8.830e-17
Identity = 38/64 (59.38%), Postives = 47/64 (73.44%), Query Frame = 1
Query:    7 QYPESFYCRLTHEVMRDPVIDPEGISYEREAILSWLSQEQTSPVTRSALTVAQLAPNRALLDTI 198
            Q  E+F C +THE+MRDPVIDP+G SYER+AI  WL Q  TSP+TR+ L+ + L PNRAL   I
Sbjct:    3 QPSETFICPITHELMRDPVIDPDGNSYERQAIEGWLRQNGTSPITRTPLSASDLRPNRALKAAI 66          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114996.3116.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A815E3P1_9BILA2.680e-2057.35Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A815MB58_9BILA5.030e-2057.35Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A6B2LVR3_9EUKA5.030e-1954.55U-box domain-containing protein (Fragment) n=1 Tax... [more]
L8H120_ACACA1.540e-1863.49von Willebrand factor type A domain containing pro... [more]
A0A7S0QWT4_9CRYP1.780e-1860.61Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A820IK77_9BILA7.620e-1859.38Hypothetical protein n=1 Tax=Rotaria magnacalcarat... [more]
A0A816EXJ9_ADIRI1.630e-1757.35Hypothetical protein (Fragment) n=1 Tax=Adineta ri... [more]
A0A820LET2_9BILA3.750e-1757.81Hypothetical protein n=1 Tax=Rotaria sp. Silwood2 ... [more]
A0A819J6S0_9BILA6.470e-1757.81Hypothetical protein n=3 Tax=Rotaria sp. Silwood2 ... [more]
A0A819MVC8_9BILA8.830e-1759.38Hypothetical protein n=3 Tax=Rotaria sordida TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114996contigM-pyrifera_M_contig114996:307..510 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue5.3e-11
Seed eggNOG ortholog5762.XP_002676603.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Hint-domain
EggNOG OGs2REND@2759,COG2304@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size204
Cds size201
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.9096456-CDS-M-pyrifera_M_contig114996:306..5071622815665.9096456-CDS-M-pyrifera_M_contig114996:306..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114996 307..507 -
1692277511.94325-CDS-M-pyrifera_M_contig114996:306..5071692277511.94325-CDS-M-pyrifera_M_contig114996:306..507Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114996 307..507 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815665.9256673-UTR-M-pyrifera_M_contig114996:507..5101622815665.9256673-UTR-M-pyrifera_M_contig114996:507..510Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114996 508..510 -
1692277511.9557796-UTR-M-pyrifera_M_contig114996:507..5101692277511.9557796-UTR-M-pyrifera_M_contig114996:507..510Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig114996 508..510 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114996.3116.1prot_M-pyrifera_M_contig114996.3116.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114996 307..507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114996.3116.1

>prot_M-pyrifera_M_contig114996.3116.1 ID=prot_M-pyrifera_M_contig114996.3116.1|Name=mRNA_M-pyrifera_M_contig114996.3116.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=67bp
MQYPESFYCRLTHEVMRDPVIDPEGISYEREAILSWLSQEQTSPVTRSAL
TVAQLAPNRALLDTIRQ
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mRNA from alignment at M-pyrifera_M_contig114996:307..510-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114996.3116.1 ID=mRNA_M-pyrifera_M_contig114996.3116.1|Name=mRNA_M-pyrifera_M_contig114996.3116.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=204bp|location=Sequence derived from alignment at M-pyrifera_M_contig114996:307..510- (Macrocystis pyrifera P11B4 male)
ATAATGCAGTACCCAGAAAGTTTCTACTGTCGGCTCACCCACGAGGTGAT GCGCGACCCCGTCATCGACCCCGAGGGCATCAGTTACGAGCGAGAGGCCA TCTTGTCATGGCTTTCGCAAGAGCAGACTTCTCCTGTGACTCGTTCAGCC CTCACAGTGGCCCAGCTGGCTCCCAACCGAGCTCTCCTTGACACAATTCG TCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114996:307..510-

>mRNA_M-pyrifera_M_contig114996.3116.1 ID=mRNA_M-pyrifera_M_contig114996.3116.1|Name=mRNA_M-pyrifera_M_contig114996.3116.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=402bp|location=Sequence derived from alignment at M-pyrifera_M_contig114996:307..510- (Macrocystis pyrifera P11B4 male)
ATGCAGTACCCAGAAAGTTTCTACTGTCGGCTCACCCACGAGGTGATGCG
CGACCCCGTCATCGACCCCGAGGGCATCAGTTACGAGCGAGAGGCCATCT
TGTCATGGCTTTCGCAAGAGCAGACTTCTCCTGTGACTCGTTCAGCCCTC
ACAGTGGCCCAGCTGGCTCCCAACCGAGCTCTCCTTGACACAATTCGTCA
GATGCAGTACCCAGAAAGTTTCTACTGTCGGCTCACCCACGAGGTGATGC
GCGACCCCGTCATCGACCCCGAGGGCATCAGTTACGAGCGAGAGGCCATC
TTGTCATGGCTTTCGCAAGAGCAGACTTCTCCTGTGACTCGTTCAGCCCT
CACAGTGGCCCAGCTGGCTCCCAACCGAGCTCTCCTTGACACAATTCGTC
AG
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