mRNA_M-pyrifera_M_contig11450.3024.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig11450.3024.1
Unique NamemRNA_M-pyrifera_M_contig11450.3024.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig11450.3024.1 vs. uniprot
Match: A0A6H5J5T1_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5T1_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 7.170e-41
Identity = 73/103 (70.87%), Postives = 83/103 (80.58%), Query Frame = 1
Query:    1 RAGELVLQIPPALWLPYCAEAAVRKAEAGAPDVLARVNNVCASFRGASASTMVRVTCLALEILFTLERDVREPYLGLLWDASRSAASLPHPLLMGPRHLDHLQ 309
            R GE +L++PPA+WLPYCAEAAVRKAEAGAPD LAR++N CA   G  A  +  V CLALE+LFTLERD REPYLGLLW+AS S  +LPHPLLMGP HLD LQ
Sbjct:   80 RVGEELLRVPPAVWLPYCAEAAVRKAEAGAPDFLARLSNTCAKIGGGDALEVAPVACLALELLFTLERDAREPYLGLLWEASTSEDALPHPLLMGPDHLDLLQ 182          
BLAST of mRNA_M-pyrifera_M_contig11450.3024.1 vs. uniprot
Match: D7G0R8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R8_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.200e-38
Identity = 75/132 (56.82%), Postives = 85/132 (64.39%), Query Frame = 1
Query:    1 RAGELVLQIPPALWLPYCAEAAVRKAEAGAPDVLARVNNVCASFRGASASTMVRVTCLALEILFTLER-----------------------------DVREPYLGLLWDASRSAASLPHPLLMGPRHLDHLQ 309
            RAGE +L++PPA+WLPYCAEAAVRKAEAGAPD LAR++N CA   G  AS +  V CLALE+LFTLER                             D REPYLGLLW+AS S  +LPHPLLMGP HLD LQ
Sbjct:   66 RAGEELLRVPPAVWLPYCAEAAVRKAEAGAPDFLARLSNTCAKIGGGDASKVAPVACLALELLFTLERIAKIVFTPQYSIEKEAGETFEKRHDNGARDAREPYLGLLWEASASEDALPHPLLMGPEHLDLLQ 197          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11450.3024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J5T1_9PHAE7.170e-4170.87SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0R8_ECTSI1.200e-3856.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11450contigM-pyrifera_M_contig11450:355..7513 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size309
Cds size309
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11450.3024.1prot_M-pyrifera_M_contig11450.3024.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig11450 355..7513 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815661.4340763-CDS-M-pyrifera_M_contig11450:354..4291622815661.4340763-CDS-M-pyrifera_M_contig11450:354..429Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11450 355..429 +
1692277509.930215-CDS-M-pyrifera_M_contig11450:354..4291692277509.930215-CDS-M-pyrifera_M_contig11450:354..429Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11450 355..429 +
1622815661.446766-CDS-M-pyrifera_M_contig11450:5282..54101622815661.446766-CDS-M-pyrifera_M_contig11450:5282..5410Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11450 5283..5410 +
1692277509.9381335-CDS-M-pyrifera_M_contig11450:5282..54101692277509.9381335-CDS-M-pyrifera_M_contig11450:5282..5410Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11450 5283..5410 +
1622815661.46014-CDS-M-pyrifera_M_contig11450:7407..75131622815661.46014-CDS-M-pyrifera_M_contig11450:7407..7513Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11450 7408..7513 +
1692277509.9527354-CDS-M-pyrifera_M_contig11450:7407..75131692277509.9527354-CDS-M-pyrifera_M_contig11450:7407..7513Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig11450 7408..7513 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig11450.3024.1

>prot_M-pyrifera_M_contig11450.3024.1 ID=prot_M-pyrifera_M_contig11450.3024.1|Name=mRNA_M-pyrifera_M_contig11450.3024.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
RAGELVLQIPPALWLPYCAEAAVRKAEAGAPDVLARVNNVCASFRGASAS
TMVRVTCLALEILFTLERDVREPYLGLLWDASRSAASLPHPLLMGPRHLD
HLQ
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mRNA from alignment at M-pyrifera_M_contig11450:355..7513+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig11450.3024.1 ID=mRNA_M-pyrifera_M_contig11450.3024.1|Name=mRNA_M-pyrifera_M_contig11450.3024.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7159bp|location=Sequence derived from alignment at M-pyrifera_M_contig11450:355..7513+ (Macrocystis pyrifera P11B4 male)
AGGGCGGGAGAGTTGGTGCTGCAAATCCCTCCCGCGCTGTGGCTGCCATA CTGTGCTGAGGCGGCAGTGCGAAAGGTAGCCGACAGATGGACTGTGCATG AAGAAGAATGTAGCCGAAAGCAAGATGCGTTGTGTAACCGAAACATGTTG TTGCGGTGTAACCGCCACATGAGTCGTGCACCCGAAAACTGTGCGGTGTA ACCGAAAAATATGTTGTTTAAACGACCCTGGGCGTTGGTGTAATTAACCA TGGTAAGGTCTAAACCTTCAAAGCAAGGATAGTAGTAACGAATATATAGC TGAACCAATACATATTCACCACTAAACACGTACCGGCTTTCAACGTTTGA TGATACCCACCAGCATATAACCGCAAACCCGGGGATTATATTTTACCGTC CCCGGGGTCTCTACGAGTCCTATACTGCGGGTCCGTGATATGTTTGCCTC CGTTAGTACGTACAGTACCTGGTACCGTTCCATGCCTACCATTTTTTGCT GTAGGTTTCCTTGAATATGGAGGCGTTTTTACCCCGGGGACATAGAGGGC TTACAAAAAACATTCCGGAGGTTTGAACTTACCCACCCGGCAGGTTCTGC ATGGTTATCAACTGCTGTTGCATTATTCGGTACAGCATCAACCCTGCTTC AAAGGTGATTGTATACATGTATGTGTTAATTGTGTAACCGCCGAATGTGT CGTGTAACCGCCAAACCGACCAACCGGAGGCTGAAACCGGGAGATTGCGT TGTTGTAACCGACAGGAGTGGCGCATGTAGGACAAATAACCGATCGATTC CCACTTAATACCCATGATATTTCAGATCAGATGTATACCTGATCTGTAGC AGGGTATGGTTTAGCTCATGTTGCTGCGTGGGAGTTGCAACATCTGCGCG ATCCAGGGCATCTTTCTTGACTTGGATCTCTACTGAACAGGTAGACCGTG CACAAAATGTCATAACGGCAGGTTGTGTTAGGATCTAGTCTAGATGATCT AGATCGCGATCTATCCGACGCGTGAAATGTTGTCATGTAACCGTTTGTAA CCGCCAAACGCGTCGTGTGACCGAATAACTACTGCTGTGTTCGTGTGCCC GAAAAATGAGCTGTGTGAGCGGAAACCGTCTCATGTATTCGACACATGTG TATTGGTTGCTGCGGGTCGGCTGCCACGACTTAACTCACCAACTCAAAGT ACTTGTTGGTCGGACTGCTATAGTTAACAGGACCTATGGTGCACATAAAA ACCTATATATTATCCTATTTTTACTAACAAAATTTGGTCCCGCTAACTAT GGACCCCCGTAACAGTTAGTCTTTTCCCGGAGGCGTCGACTGTCCGACTT TTTGGTATTACGGGGATCCATAGTTAACGGGACTAAATTTTGTTAGTAAA AATAGGTAAATATATAGCTTTTTATGTATACCATAGGTCCTGTTAACTAT AGACCCCCGTAATAGTAGGAAGGATTAATGAGTACGGGACTCCCATTTTC CTTTTTTGGGGGCGAGGGCCCCCTCGGCCGGCCCTGACTTGCTCCGCTCG CATGCTTCAGGTCGGCAAAATAAAGTCGGCTTGCCGGCTGAAAGACAGTT TGTTGGCTGTATCGGCACCTACGGATTAATTATCGCCCAGTTAATCTCTA CAAACACCATCTGACGACGCGGGCTACGATGGCGGTAGGTACAGTAGCAC TGTGTTTGGCCAAACTGCCACTGGGACCTACGGGGATCCTTAACCTCTTT GGTACTGCAGTCCCGTGATGGGGACAATCCAGTCTAATTCCGAGTGGTTT GTCCCCAAAACAGAACTGCAGTCCTAAAAAGGGTTAAGCCACTGGGACCA AACGGGGATCCTTAAGCAAGAGCTACCCGACAATAAGTATCGTATTTTTT TTGGTTTTGAAAAAAAACCTCCCGAGTATATTTTTGGTGATGCATCTAAA AGGGCACACACGCTTCGTCGGGTTGGCCTTACGTTCTTCCTCAGAGTCAG TTTTTAGCGTGGTCGCGAGAAGACCATCGAATGTGAGGAACTTCAGAAAA AAAAAATCCCGGTGCACCCTTACCTTGAAGCGGGTATATCTGATACGCCT TCTGCGACAGGGATGTGTGTATGCAGCACATTCTTCCTTCGGAGGAAAAT CTCTAAATCATGAAATAGGGATCTGAGACGCGTTCTACGATACATATTAT TATAGAGGTAGCACGTTCAGAGACGAAGCGTTGTTTACTGCCGGGGCTTC TTGGCCCAGTATTGTTCGAATCTCGTTCTGCGTTTTTTTTTTTTTTTCGG TATTTTTCGTGCGATACATAAGCCAAGCCATGTGATTTTTTTTGTTCGGG TTAAGCGTACGTTTTTTTTTTTTTCGTCTCAGAAAATCTGTGTTGTTAAT AGGACGAGTTGTGGAGCTCCAAAAGTGAGGAAGGCCCCATGAAACGTTAG GTGATGACTCCCCCCTGGTCGCTGTCTCCACCGCACCTGTCCCTCTCGGG GGCCAGTCAGGTCGGGTCAACGTGCCCGAACACCAGTGGTAACAGAAGCA GCCTGCTCTCATGCTGCAACTGGCTGGAGCTCATTGGCTAAATCGACACA CGACACGAAATTCGAACGTGGAAGTGTGGTGAGCTTAAGCTTTATTTTTT ACCGATCCGCCGGTGGATTGAAAAAAAAAAAGAGGTAAAAATTAGGTGCA TCCCTGCCGTAGCATGCATCCTGATCTGACCTGTCCCACGGGTGAACACT TCCACACCTCAGATAGATCATCGACAGATCATCGACAGATCATCTAGGTC ATCCATTCCCATTTCACGATCTAGATCTTTCAGGGCAGGACGCTGTTCCT GCTCTGTATGACCTCGGTCATGTTGCCGTTATTTTTTTGGGGGGGTAGAC GTATAAATCTGCATTATCAATGCGCAGGACATGTTTCCCGGGTTGGGGCC TGTACTACGGTATGCAGCTGGGACCTGGATGATCTACTGTAGATCATGAT CTATCTGATCTATCTGATGTGTCCGACGACGCGTGTGCTACGACCGGGGC TTGCGTATGGCACGTTCGGCCCCGCAAGACAAGTGTGCCAGACTGGAGAG GTTTCCTCAACTGAAGAACTAGCCAGGAAGGCATGCCTGATTGTCGTGAA CCCTTCTCGGACTTGAGCCCCGTTTTCGGGACAAAACACTCCAATCTTAA CCCTAATTTGTCCCCACAAAGGGTCTGCAGTCCTAAAATGATAAAATCCA TTGTTGTTTTTACAGTAATACAGCGATTTCGAACCGTTCCTCTATACTAC GACAGGCCACCGAGGAGGTTATCCCTTTTAGCGCAAACTGCAGTCCCGCT CTGGGGACAAATTACTTAGGATTTGAGTGGTTTGTCCACTGCTGCTGTAG TCGTAAAAGAGATGAGCGTCCATTGTTTTCTGATGAAAAATGTTTTTTTT TTGGGTGTACCGTGAGCGGAGATCCTATGCTGTAAGCAAGTGATGGGCCT CAGAAAGAGGTGCCGCTACTACCCGTGCCGTGGCACACGGCTGACTGACT GACTGACTGACTGACTGACGTTCTGACTGGCTGATTGACTGAGTGGCTGA GTGACTGAGTGACTGAGTGACTGAGTGAGTGAGTGAGTGAGTGACTGACT GACTGACTGACTGACTGACTGACTGACTGGCTAGCTGATTGACGTACTGA CTGACTAACGTACTGACGCACTGACTGATTACCTGACTGACTGACTAAGG TACTGACGTTCTGACTGATAGACTGACGTACTGGCTGATTGACTAACGTA CCGACTAACTGATTGATTGAGGAGGCGTGTTTCGATAAGGGTTAGGGGTT GGACGTTTTCACCCCAATCAAAATCAGTAGAGCTCACCACTTACCTGGTG TTCGAGATCTGGTGTGATTGGCTCAGGGTCAGGATTGAGGTGAGGTGGCT TATTGGCTTAGGGCTATAGACTTAAGGGTTAGTTTCATTCGTCTCTTACA CAGTGCGTGTCAACCAGTTTCTCGGATATGTGGTTTCAACCCTCGGAGCG GTTTGTCACTTACCGAGCTGTTATCCTGAGGTGTCAGGCACTCAACATCA TTGAATCCAAGGTGGAATTAATCAAGATTATCCGATATATGCCGCAGTAA GAGTCCGTGACAGTGCTGTTTATCGGATTTTTATAGGTTAAAACGTTTCT CTCGAAGGTCTGTTGCTGGTCTTGTCAAAAGCCAGGAACCTCAGAACGTT CGGGTGCTGTACCTCCCCCCCGAACAGCACGCATAGTAAAACCCATTGCT GTCTCTGGAACTGGCCACACCAGAAATTAAATCAATTCATTGACGCTGGC ATCCATACGTAAGAAAATCTGCCCCATAGGCGGTTCTTGTAGTAGGATAC AGCTCACCCTTTTTGCGACTCGTCCAACACCTCACGGCGCTTCGCGCTTG GTGTGAGAAATGTCTGCCTGGTCGGTGAAAACCCGACGGACTCCCTCCGC CCCGGCATTGTAGGGATGCGAGGGTCTATGGTCATGCGACTACGGCCATG CATGGTGATGAGTACACCCCCCCCCCCCCCCCCCCCCCCCCCCCAACACG CCAGGCCCGGCGCGCACATGCACCCCCCCCCCCCCCCCCCCCCCACCCAC CCCCGCCCCACACNNNNNNNNNNGGGTAGACCCACGGGCCCCCCCCCGCC CCGCCGGCGGCGCGCGGGGGGGGCCGGCGGCCCGGCGCCCACGGCGCGGC ATGGGGCTAGGATCACCCCCCCCCCCCCCCCTCCCCCCAGCACAAACGGC TACGGCCGTGCATGACAATGAGTACACCCCCCCCGCGCCACAGCCATAGC ACGCGTCTGACACTGCTGAATCTCTGCTTGCTTGCTTGCTTGGCGCCGGG ATGTGTGTACGTGCGCCTTGCGTTTCAGGCGGAAGCCGGTGCTCCGGATG TCCTCGCCCGGGTCAACAACGTCTGCGCCAGCTTTCGGGGTGCGAGCGCG TCTACGATGGTCCGGGTGACTTGCCTCGCCCTCGAGATCCTCTTTACGCT CGAAAGGTTTGTAGCGGTGCGGAGGCGTTTGCGCTTAGGGTAGGGGTATT GCCACTTTTCCGCCGGGGTGTTTTATGTTTGGAGAGGCTCCTCCACCTGG GAACTAACTATAGCTACCAGGTAGCTTTTACCGGGGGGTCATGGTGGTGA GGACCCATCACATACACACAAAAACTATACATTCCAGTATTTTTACTATT TCGGGGGTACACAGTTAACAGGACCTATGGTATACATAAAATACTATAAA TTTACCTATTTTTACTAACAAAATTTGGTCCCGTTAACTATGGACCCCCG TAATAGGTATATTTGGTCGCGACTACTATTACGGGGGGCCACAGTAAATA GGACCAAATATTTTTAGTGAACATAAGTAAATATATAGGATTTTATGTAT ACCATAGGTCCTGTTAACTATGGACCCCCGTAGTATGTTCTTCCGTCATT GTTGTCGTTGAAATCCCGTTCGCGTTTTTATTTTTCAAAAGCCCTCAATG TGTCCATCTCAGGTAGAGCTGCGAGTGGGCACGGCTTGAGACACCAACTA GATATTAGTCGGAAAAGTTGTTGCTCGTTTCATGGAGGTGCCGGCTACCC GACTTACTGGGTTTCCATACTTGTAGGAAGGGATGTTGAATACGGGTAGA AATACATATTTGGGTGCCCCCCCCCCCCCGGCTGATTTGGCTCGGTTTTG CTCGCCTCACTTGAGGCGTCAACTCGTCTGGCCATCAGCTGGCTTCGCTA GCCGACGCACCGACTAAAACCAGTCATTAGGCTAACGGCACCCACCGATA GTTCGATGGTTGATGCATGGTTGTCAAGATGCGATGGTTATATTATATGA ATGATGCCAATGCGATGGTTCTCATGCTTTTGAAATCCTGCCGCGTCACA GGTCTACTTGTAGGGAAAGGGCTTGTTCCACGAGCGGGACAGATCATCTG CAGATAGATGATGATCTGTCTAAATCATGTAGACCCTAAGCTTCCGTTGT GAGATGTTGTGCAGTACGGGCGCATATATAGGGGTATGCACTTTTTGGGC CCATCTATTTCTGTTCGAAAGGGCTCCTCTACCCCTCCACTGCGGAGAGC TACAGCAGCTGCCCGGTGATGCTGGTTTTCATATTCGTGTTTTTTTCCAG TGTTTTTTTTTCATCGGACAGATCATATAACAGATCATTGATTCCTGCAG TTCATGATCTAAATTCTTAAGGGAAGATATATTACTGATCTGCATGATCT AGCTCATGCTGCGTGGCAGCCGAACCATCTAATTATTCTGGCACAGATTT CCTGGGTTGGAATTTGACCCCTCGAGGTGTGGTTCGGCACGAGTTAAGCC ACCAGCTAGTTGCTTGTCGGACTAATACTGTAGTTAGTCGCTTTCTGGAG GTACTGGCCATCCGACTAATTGTGTTCCATGCCAGTAAGTGTTGACTGCG GGATATATTTTTTGTCTGTGACGAGCCAACCATGAGGCAGTTACGTAGCA CCCCCGCTGCTTTCTCTGGAAGTGGCTACCCCGGAAATTAAATTACCTCA TTGAAGCTGTCATCCATATGAAAGTCCGCCTCACAAGCGGTTCTTAGTAG NNNNNNNNNNGCGCTTCGCGCTTGGTGCAAGCAATGTCTGCCTCGTCGGT AAAAACGCGACGTTCTCCGTCCCGGCATTGTAGGGATGCGAGGTTCTATG GTCATACGACTACGGACATGCATAATATCGAGTACACGCCCCCCGCTACC CTAGAAGTATTATTTCGATTCCGTTTCGGTTTTCAACCTTAAGGTCAGGA GCTATTAATACGTCATCCCGCGAAACCTATATCCATATCGCCCACTACTT CTGTGTACTGCGAGACGACCCAGGCTCCTCTGTACCTGCCCCGTGTGCCT TTCGTAAAGATCGTTCGAACGATCGGTGAAAATCCAAACCGTGGCGGCCC GTTCAAACCCCTAGCATTTTTTTAAAAATCGTTGTGCTCGGCTGCGCGGG CAGAGACGTCAGGGAGCCGTACCTGGGCCTTCTCTGGGATGCTTCGCGGT CGGCTGCATCTCTGCCACACCCGCTCCTTATGGGTCCAAGGCACTTGGAT CATCTTCAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig11450:355..7513+

>mRNA_M-pyrifera_M_contig11450.3024.1 ID=mRNA_M-pyrifera_M_contig11450.3024.1|Name=mRNA_M-pyrifera_M_contig11450.3024.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig11450:355..7513+ (Macrocystis pyrifera P11B4 male)
AGGGCGGGAGAGTTGGTGCTGCAAATCCCTCCCGCGCTGTGGCTGCCATA
CTGTGCTGAGGCGGCAGTGCGAAAGAGGGCGGGAGAGTTGGTGCTGCAAA
TCCCTCCCGCGCTGTGGCTGCCATACTGTGCTGAGGCGGCAGTGCGAAAG
GCGGAAGCCGGTGCTCCGGATGTCCTCGCCCGGGTCAACAACGTCTGCGC
CAGCTTTCGGGGTGCGAGCGCGTCTACGATGGTCCGGGTGACTTGCCTCG
CCCTCGAGATCCTCTTTACGCTCGAAAGGCGGAAGCCGGTGCTCCGGATG
TCCTCGCCCGGGTCAACAACGTCTGCGCCAGCTTTCGGGGTGCGAGCGCG
TCTACGATGGTCCGGGTGACTTGCCTCGCCCTCGAGATCCTCTTTACGCT
CGAAAGAGACGTCAGGGAGCCGTACCTGGGCCTTCTCTGGGATGCTTCGC
GGTCGGCTGCATCTCTGCCACACCCGCTCCTTATGGGTCCAAGGCACTTG
GATCATCTTCAGAGACGTCAGGGAGCCGTACCTGGGCCTTCTCTGGGATG
CTTCGCGGTCGGCTGCATCTCTGCCACACCCGCTCCTTATGGGTCCAAGG
CACTTGGATCATCTTCAG
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