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Homology
BLAST of mRNA_M-pyrifera_M_contig11450.3024.1 vs. uniprot
Match: A0A6H5J5T1_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5T1_9PHAE) HSP 1 Score: 151 bits (381), Expect = 7.170e-41 Identity = 73/103 (70.87%), Postives = 83/103 (80.58%), Query Frame = 1
Query: 1 RAGELVLQIPPALWLPYCAEAAVRKAEAGAPDVLARVNNVCASFRGASASTMVRVTCLALEILFTLERDVREPYLGLLWDASRSAASLPHPLLMGPRHLDHLQ 309
R GE +L++PPA+WLPYCAEAAVRKAEAGAPD LAR++N CA G A + V CLALE+LFTLERD REPYLGLLW+AS S +LPHPLLMGP HLD LQ
Sbjct: 80 RVGEELLRVPPAVWLPYCAEAAVRKAEAGAPDFLARLSNTCAKIGGGDALEVAPVACLALELLFTLERDAREPYLGLLWEASTSEDALPHPLLMGPDHLDLLQ 182
BLAST of mRNA_M-pyrifera_M_contig11450.3024.1 vs. uniprot
Match: D7G0R8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R8_ECTSI) HSP 1 Score: 140 bits (353), Expect = 1.200e-38 Identity = 75/132 (56.82%), Postives = 85/132 (64.39%), Query Frame = 1
Query: 1 RAGELVLQIPPALWLPYCAEAAVRKAEAGAPDVLARVNNVCASFRGASASTMVRVTCLALEILFTLER-----------------------------DVREPYLGLLWDASRSAASLPHPLLMGPRHLDHLQ 309
RAGE +L++PPA+WLPYCAEAAVRKAEAGAPD LAR++N CA G AS + V CLALE+LFTLER D REPYLGLLW+AS S +LPHPLLMGP HLD LQ
Sbjct: 66 RAGEELLRVPPAVWLPYCAEAAVRKAEAGAPDFLARLSNTCAKIGGGDASKVAPVACLALELLFTLERIAKIVFTPQYSIEKEAGETFEKRHDNGARDAREPYLGLLWEASASEDALPHPLLMGPEHLDLLQ 197
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 309 |
| Cds size | 309 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622815661.4340763-CDS-M-pyrifera_M_contig11450:354..429 | 1622815661.4340763-CDS-M-pyrifera_M_contig11450:354..429 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig11450 355..429 + |
| 1692277509.930215-CDS-M-pyrifera_M_contig11450:354..429 | 1692277509.930215-CDS-M-pyrifera_M_contig11450:354..429 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig11450 355..429 + |
| 1622815661.446766-CDS-M-pyrifera_M_contig11450:5282..5410 | 1622815661.446766-CDS-M-pyrifera_M_contig11450:5282..5410 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig11450 5283..5410 + |
| 1692277509.9381335-CDS-M-pyrifera_M_contig11450:5282..5410 | 1692277509.9381335-CDS-M-pyrifera_M_contig11450:5282..5410 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig11450 5283..5410 + |
| 1622815661.46014-CDS-M-pyrifera_M_contig11450:7407..7513 | 1622815661.46014-CDS-M-pyrifera_M_contig11450:7407..7513 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig11450 7408..7513 + |
| 1692277509.9527354-CDS-M-pyrifera_M_contig11450:7407..7513 | 1692277509.9527354-CDS-M-pyrifera_M_contig11450:7407..7513 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig11450 7408..7513 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig11450.3024.1 >prot_M-pyrifera_M_contig11450.3024.1 ID=prot_M-pyrifera_M_contig11450.3024.1|Name=mRNA_M-pyrifera_M_contig11450.3024.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
RAGELVLQIPPALWLPYCAEAAVRKAEAGAPDVLARVNNVCASFRGASAS TMVRVTCLALEILFTLERDVREPYLGLLWDASRSAASLPHPLLMGPRHLD HLQ back to topmRNA from alignment at M-pyrifera_M_contig11450:355..7513+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig11450.3024.1 ID=mRNA_M-pyrifera_M_contig11450.3024.1|Name=mRNA_M-pyrifera_M_contig11450.3024.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=7159bp|location=Sequence derived from alignment at M-pyrifera_M_contig11450:355..7513+ (Macrocystis pyrifera P11B4 male) AGGGCGGGAGAGTTGGTGCTGCAAATCCCTCCCGCGCTGTGGCTGCCATA
CTGTGCTGAGGCGGCAGTGCGAAAGGTAGCCGACAGATGGACTGTGCATG
AAGAAGAATGTAGCCGAAAGCAAGATGCGTTGTGTAACCGAAACATGTTG
TTGCGGTGTAACCGCCACATGAGTCGTGCACCCGAAAACTGTGCGGTGTA
ACCGAAAAATATGTTGTTTAAACGACCCTGGGCGTTGGTGTAATTAACCA
TGGTAAGGTCTAAACCTTCAAAGCAAGGATAGTAGTAACGAATATATAGC
TGAACCAATACATATTCACCACTAAACACGTACCGGCTTTCAACGTTTGA
TGATACCCACCAGCATATAACCGCAAACCCGGGGATTATATTTTACCGTC
CCCGGGGTCTCTACGAGTCCTATACTGCGGGTCCGTGATATGTTTGCCTC
CGTTAGTACGTACAGTACCTGGTACCGTTCCATGCCTACCATTTTTTGCT
GTAGGTTTCCTTGAATATGGAGGCGTTTTTACCCCGGGGACATAGAGGGC
TTACAAAAAACATTCCGGAGGTTTGAACTTACCCACCCGGCAGGTTCTGC
ATGGTTATCAACTGCTGTTGCATTATTCGGTACAGCATCAACCCTGCTTC
AAAGGTGATTGTATACATGTATGTGTTAATTGTGTAACCGCCGAATGTGT
CGTGTAACCGCCAAACCGACCAACCGGAGGCTGAAACCGGGAGATTGCGT
TGTTGTAACCGACAGGAGTGGCGCATGTAGGACAAATAACCGATCGATTC
CCACTTAATACCCATGATATTTCAGATCAGATGTATACCTGATCTGTAGC
AGGGTATGGTTTAGCTCATGTTGCTGCGTGGGAGTTGCAACATCTGCGCG
ATCCAGGGCATCTTTCTTGACTTGGATCTCTACTGAACAGGTAGACCGTG
CACAAAATGTCATAACGGCAGGTTGTGTTAGGATCTAGTCTAGATGATCT
AGATCGCGATCTATCCGACGCGTGAAATGTTGTCATGTAACCGTTTGTAA
CCGCCAAACGCGTCGTGTGACCGAATAACTACTGCTGTGTTCGTGTGCCC
GAAAAATGAGCTGTGTGAGCGGAAACCGTCTCATGTATTCGACACATGTG
TATTGGTTGCTGCGGGTCGGCTGCCACGACTTAACTCACCAACTCAAAGT
ACTTGTTGGTCGGACTGCTATAGTTAACAGGACCTATGGTGCACATAAAA
ACCTATATATTATCCTATTTTTACTAACAAAATTTGGTCCCGCTAACTAT
GGACCCCCGTAACAGTTAGTCTTTTCCCGGAGGCGTCGACTGTCCGACTT
TTTGGTATTACGGGGATCCATAGTTAACGGGACTAAATTTTGTTAGTAAA
AATAGGTAAATATATAGCTTTTTATGTATACCATAGGTCCTGTTAACTAT
AGACCCCCGTAATAGTAGGAAGGATTAATGAGTACGGGACTCCCATTTTC
CTTTTTTGGGGGCGAGGGCCCCCTCGGCCGGCCCTGACTTGCTCCGCTCG
CATGCTTCAGGTCGGCAAAATAAAGTCGGCTTGCCGGCTGAAAGACAGTT
TGTTGGCTGTATCGGCACCTACGGATTAATTATCGCCCAGTTAATCTCTA
CAAACACCATCTGACGACGCGGGCTACGATGGCGGTAGGTACAGTAGCAC
TGTGTTTGGCCAAACTGCCACTGGGACCTACGGGGATCCTTAACCTCTTT
GGTACTGCAGTCCCGTGATGGGGACAATCCAGTCTAATTCCGAGTGGTTT
GTCCCCAAAACAGAACTGCAGTCCTAAAAAGGGTTAAGCCACTGGGACCA
AACGGGGATCCTTAAGCAAGAGCTACCCGACAATAAGTATCGTATTTTTT
TTGGTTTTGAAAAAAAACCTCCCGAGTATATTTTTGGTGATGCATCTAAA
AGGGCACACACGCTTCGTCGGGTTGGCCTTACGTTCTTCCTCAGAGTCAG
TTTTTAGCGTGGTCGCGAGAAGACCATCGAATGTGAGGAACTTCAGAAAA
AAAAAATCCCGGTGCACCCTTACCTTGAAGCGGGTATATCTGATACGCCT
TCTGCGACAGGGATGTGTGTATGCAGCACATTCTTCCTTCGGAGGAAAAT
CTCTAAATCATGAAATAGGGATCTGAGACGCGTTCTACGATACATATTAT
TATAGAGGTAGCACGTTCAGAGACGAAGCGTTGTTTACTGCCGGGGCTTC
TTGGCCCAGTATTGTTCGAATCTCGTTCTGCGTTTTTTTTTTTTTTTCGG
TATTTTTCGTGCGATACATAAGCCAAGCCATGTGATTTTTTTTGTTCGGG
TTAAGCGTACGTTTTTTTTTTTTTCGTCTCAGAAAATCTGTGTTGTTAAT
AGGACGAGTTGTGGAGCTCCAAAAGTGAGGAAGGCCCCATGAAACGTTAG
GTGATGACTCCCCCCTGGTCGCTGTCTCCACCGCACCTGTCCCTCTCGGG
GGCCAGTCAGGTCGGGTCAACGTGCCCGAACACCAGTGGTAACAGAAGCA
GCCTGCTCTCATGCTGCAACTGGCTGGAGCTCATTGGCTAAATCGACACA
CGACACGAAATTCGAACGTGGAAGTGTGGTGAGCTTAAGCTTTATTTTTT
ACCGATCCGCCGGTGGATTGAAAAAAAAAAAGAGGTAAAAATTAGGTGCA
TCCCTGCCGTAGCATGCATCCTGATCTGACCTGTCCCACGGGTGAACACT
TCCACACCTCAGATAGATCATCGACAGATCATCGACAGATCATCTAGGTC
ATCCATTCCCATTTCACGATCTAGATCTTTCAGGGCAGGACGCTGTTCCT
GCTCTGTATGACCTCGGTCATGTTGCCGTTATTTTTTTGGGGGGGTAGAC
GTATAAATCTGCATTATCAATGCGCAGGACATGTTTCCCGGGTTGGGGCC
TGTACTACGGTATGCAGCTGGGACCTGGATGATCTACTGTAGATCATGAT
CTATCTGATCTATCTGATGTGTCCGACGACGCGTGTGCTACGACCGGGGC
TTGCGTATGGCACGTTCGGCCCCGCAAGACAAGTGTGCCAGACTGGAGAG
GTTTCCTCAACTGAAGAACTAGCCAGGAAGGCATGCCTGATTGTCGTGAA
CCCTTCTCGGACTTGAGCCCCGTTTTCGGGACAAAACACTCCAATCTTAA
CCCTAATTTGTCCCCACAAAGGGTCTGCAGTCCTAAAATGATAAAATCCA
TTGTTGTTTTTACAGTAATACAGCGATTTCGAACCGTTCCTCTATACTAC
GACAGGCCACCGAGGAGGTTATCCCTTTTAGCGCAAACTGCAGTCCCGCT
CTGGGGACAAATTACTTAGGATTTGAGTGGTTTGTCCACTGCTGCTGTAG
TCGTAAAAGAGATGAGCGTCCATTGTTTTCTGATGAAAAATGTTTTTTTT
TTGGGTGTACCGTGAGCGGAGATCCTATGCTGTAAGCAAGTGATGGGCCT
CAGAAAGAGGTGCCGCTACTACCCGTGCCGTGGCACACGGCTGACTGACT
GACTGACTGACTGACTGACGTTCTGACTGGCTGATTGACTGAGTGGCTGA
GTGACTGAGTGACTGAGTGACTGAGTGAGTGAGTGAGTGAGTGACTGACT
GACTGACTGACTGACTGACTGACTGACTGGCTAGCTGATTGACGTACTGA
CTGACTAACGTACTGACGCACTGACTGATTACCTGACTGACTGACTAAGG
TACTGACGTTCTGACTGATAGACTGACGTACTGGCTGATTGACTAACGTA
CCGACTAACTGATTGATTGAGGAGGCGTGTTTCGATAAGGGTTAGGGGTT
GGACGTTTTCACCCCAATCAAAATCAGTAGAGCTCACCACTTACCTGGTG
TTCGAGATCTGGTGTGATTGGCTCAGGGTCAGGATTGAGGTGAGGTGGCT
TATTGGCTTAGGGCTATAGACTTAAGGGTTAGTTTCATTCGTCTCTTACA
CAGTGCGTGTCAACCAGTTTCTCGGATATGTGGTTTCAACCCTCGGAGCG
GTTTGTCACTTACCGAGCTGTTATCCTGAGGTGTCAGGCACTCAACATCA
TTGAATCCAAGGTGGAATTAATCAAGATTATCCGATATATGCCGCAGTAA
GAGTCCGTGACAGTGCTGTTTATCGGATTTTTATAGGTTAAAACGTTTCT
CTCGAAGGTCTGTTGCTGGTCTTGTCAAAAGCCAGGAACCTCAGAACGTT
CGGGTGCTGTACCTCCCCCCCGAACAGCACGCATAGTAAAACCCATTGCT
GTCTCTGGAACTGGCCACACCAGAAATTAAATCAATTCATTGACGCTGGC
ATCCATACGTAAGAAAATCTGCCCCATAGGCGGTTCTTGTAGTAGGATAC
AGCTCACCCTTTTTGCGACTCGTCCAACACCTCACGGCGCTTCGCGCTTG
GTGTGAGAAATGTCTGCCTGGTCGGTGAAAACCCGACGGACTCCCTCCGC
CCCGGCATTGTAGGGATGCGAGGGTCTATGGTCATGCGACTACGGCCATG
CATGGTGATGAGTACACCCCCCCCCCCCCCCCCCCCCCCCCCCCAACACG
CCAGGCCCGGCGCGCACATGCACCCCCCCCCCCCCCCCCCCCCCACCCAC
CCCCGCCCCACACNNNNNNNNNNGGGTAGACCCACGGGCCCCCCCCCGCC
CCGCCGGCGGCGCGCGGGGGGGGCCGGCGGCCCGGCGCCCACGGCGCGGC
ATGGGGCTAGGATCACCCCCCCCCCCCCCCCTCCCCCCAGCACAAACGGC
TACGGCCGTGCATGACAATGAGTACACCCCCCCCGCGCCACAGCCATAGC
ACGCGTCTGACACTGCTGAATCTCTGCTTGCTTGCTTGCTTGGCGCCGGG
ATGTGTGTACGTGCGCCTTGCGTTTCAGGCGGAAGCCGGTGCTCCGGATG
TCCTCGCCCGGGTCAACAACGTCTGCGCCAGCTTTCGGGGTGCGAGCGCG
TCTACGATGGTCCGGGTGACTTGCCTCGCCCTCGAGATCCTCTTTACGCT
CGAAAGGTTTGTAGCGGTGCGGAGGCGTTTGCGCTTAGGGTAGGGGTATT
GCCACTTTTCCGCCGGGGTGTTTTATGTTTGGAGAGGCTCCTCCACCTGG
GAACTAACTATAGCTACCAGGTAGCTTTTACCGGGGGGTCATGGTGGTGA
GGACCCATCACATACACACAAAAACTATACATTCCAGTATTTTTACTATT
TCGGGGGTACACAGTTAACAGGACCTATGGTATACATAAAATACTATAAA
TTTACCTATTTTTACTAACAAAATTTGGTCCCGTTAACTATGGACCCCCG
TAATAGGTATATTTGGTCGCGACTACTATTACGGGGGGCCACAGTAAATA
GGACCAAATATTTTTAGTGAACATAAGTAAATATATAGGATTTTATGTAT
ACCATAGGTCCTGTTAACTATGGACCCCCGTAGTATGTTCTTCCGTCATT
GTTGTCGTTGAAATCCCGTTCGCGTTTTTATTTTTCAAAAGCCCTCAATG
TGTCCATCTCAGGTAGAGCTGCGAGTGGGCACGGCTTGAGACACCAACTA
GATATTAGTCGGAAAAGTTGTTGCTCGTTTCATGGAGGTGCCGGCTACCC
GACTTACTGGGTTTCCATACTTGTAGGAAGGGATGTTGAATACGGGTAGA
AATACATATTTGGGTGCCCCCCCCCCCCCGGCTGATTTGGCTCGGTTTTG
CTCGCCTCACTTGAGGCGTCAACTCGTCTGGCCATCAGCTGGCTTCGCTA
GCCGACGCACCGACTAAAACCAGTCATTAGGCTAACGGCACCCACCGATA
GTTCGATGGTTGATGCATGGTTGTCAAGATGCGATGGTTATATTATATGA
ATGATGCCAATGCGATGGTTCTCATGCTTTTGAAATCCTGCCGCGTCACA
GGTCTACTTGTAGGGAAAGGGCTTGTTCCACGAGCGGGACAGATCATCTG
CAGATAGATGATGATCTGTCTAAATCATGTAGACCCTAAGCTTCCGTTGT
GAGATGTTGTGCAGTACGGGCGCATATATAGGGGTATGCACTTTTTGGGC
CCATCTATTTCTGTTCGAAAGGGCTCCTCTACCCCTCCACTGCGGAGAGC
TACAGCAGCTGCCCGGTGATGCTGGTTTTCATATTCGTGTTTTTTTCCAG
TGTTTTTTTTTCATCGGACAGATCATATAACAGATCATTGATTCCTGCAG
TTCATGATCTAAATTCTTAAGGGAAGATATATTACTGATCTGCATGATCT
AGCTCATGCTGCGTGGCAGCCGAACCATCTAATTATTCTGGCACAGATTT
CCTGGGTTGGAATTTGACCCCTCGAGGTGTGGTTCGGCACGAGTTAAGCC
ACCAGCTAGTTGCTTGTCGGACTAATACTGTAGTTAGTCGCTTTCTGGAG
GTACTGGCCATCCGACTAATTGTGTTCCATGCCAGTAAGTGTTGACTGCG
GGATATATTTTTTGTCTGTGACGAGCCAACCATGAGGCAGTTACGTAGCA
CCCCCGCTGCTTTCTCTGGAAGTGGCTACCCCGGAAATTAAATTACCTCA
TTGAAGCTGTCATCCATATGAAAGTCCGCCTCACAAGCGGTTCTTAGTAG
NNNNNNNNNNGCGCTTCGCGCTTGGTGCAAGCAATGTCTGCCTCGTCGGT
AAAAACGCGACGTTCTCCGTCCCGGCATTGTAGGGATGCGAGGTTCTATG
GTCATACGACTACGGACATGCATAATATCGAGTACACGCCCCCCGCTACC
CTAGAAGTATTATTTCGATTCCGTTTCGGTTTTCAACCTTAAGGTCAGGA
GCTATTAATACGTCATCCCGCGAAACCTATATCCATATCGCCCACTACTT
CTGTGTACTGCGAGACGACCCAGGCTCCTCTGTACCTGCCCCGTGTGCCT
TTCGTAAAGATCGTTCGAACGATCGGTGAAAATCCAAACCGTGGCGGCCC
GTTCAAACCCCTAGCATTTTTTTAAAAATCGTTGTGCTCGGCTGCGCGGG
CAGAGACGTCAGGGAGCCGTACCTGGGCCTTCTCTGGGATGCTTCGCGGT
CGGCTGCATCTCTGCCACACCCGCTCCTTATGGGTCCAAGGCACTTGGAT
CATCTTCAG back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig11450:355..7513+ >mRNA_M-pyrifera_M_contig11450.3024.1 ID=mRNA_M-pyrifera_M_contig11450.3024.1|Name=mRNA_M-pyrifera_M_contig11450.3024.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig11450:355..7513+ (Macrocystis pyrifera P11B4 male) AGGGCGGGAGAGTTGGTGCTGCAAATCCCTCCCGCGCTGTGGCTGCCATA CTGTGCTGAGGCGGCAGTGCGAAAGAGGGCGGGAGAGTTGGTGCTGCAAA TCCCTCCCGCGCTGTGGCTGCCATACTGTGCTGAGGCGGCAGTGCGAAAG GCGGAAGCCGGTGCTCCGGATGTCCTCGCCCGGGTCAACAACGTCTGCGC CAGCTTTCGGGGTGCGAGCGCGTCTACGATGGTCCGGGTGACTTGCCTCG CCCTCGAGATCCTCTTTACGCTCGAAAGGCGGAAGCCGGTGCTCCGGATG TCCTCGCCCGGGTCAACAACGTCTGCGCCAGCTTTCGGGGTGCGAGCGCG TCTACGATGGTCCGGGTGACTTGCCTCGCCCTCGAGATCCTCTTTACGCT CGAAAGAGACGTCAGGGAGCCGTACCTGGGCCTTCTCTGGGATGCTTCGC GGTCGGCTGCATCTCTGCCACACCCGCTCCTTATGGGTCCAAGGCACTTG GATCATCTTCAGAGACGTCAGGGAGCCGTACCTGGGCCTTCTCTGGGATG CTTCGCGGTCGGCTGCATCTCTGCCACACCCGCTCCTTATGGGTCCAAGG CACTTGGATCATCTTCAG back to top
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