mRNA_M-pyrifera_M_contig101431.299.1 (mRNA) Macrocystis pyrifera P11B4 male
Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig101431.299.1 vs. uniprot
Match: UPI001E38DB48 (tRNA pseudouridine(38-40) synthase TruA n=2 Tax=Rhabdothermincola sp. EGI L10124 TaxID=2903142 RepID=UPI001E38DB48) HSP 1 Score: 257 bits (656), Expect = 5.680e-83 Identity = 129/211 (61.14%), Postives = 148/211 (70.14%), Query Frame = 1 Query: 10 HP-DIVMSGRTDAGVHAWGQVLSFDVPEAKADPERITRVINVGMQPEVVCRDARIVPDDFSARFSAIGRRYRFQVLNTPMPSPFLSETMWWVGDPLDLASMRLACDPLIGEHDFSSFCRRPKSGDGPEVSLVRRVTRAHWSDLGDGVLRFEIDGTAFCHQMVRSIVGFHVAVGRGRRSAGELRGVLAARDRNASVSPAPPHGLTLWAVDYP 639 HP + ++GRTD GVHA GQV+S DV + D + R +N PE+ R A IV DDF ARFSA R YR+ VLN P P PFL+ T WWV +PLDL ++RL CDPLIG HDFSSFCRRPK G GPEV+LVRRV A W DLGDGVLRF+I AFCHQMVRSIVG V VGRGRR AG++ G+ A DR + APPHGL LW V YP Sbjct: 61 HPVTLSVAGRTDKGVHAHGQVVSLDVADPLVDLGALARAVNGICGPEISVRAATIVADDFDARFSATWRAYRYTVLNRPDPDPFLARTAWWVPEPLDLNALRLGCDPLIGSHDFSSFCRRPK-GAGPEVTLVRRVLDARWHDLGDGVLRFDIRANAFCHQMVRSIVGLLVDVGRGRRRAGQVAGIRRAGDRAGVPTVAPPHGLCLWEVGYP 270
BLAST of mRNA_M-pyrifera_M_contig101431.299.1 vs. uniprot
Match: A0A5Q2RGF6_9ACTN (tRNA pseudouridine synthase A n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RGF6_9ACTN) HSP 1 Score: 253 bits (645), Expect = 2.400e-81 Identity = 121/211 (57.35%), Postives = 148/211 (70.14%), Query Frame = 1 Query: 1 LGYHPDIVMSGRTDAGVHAWGQVLSFDVPEAKADPERITRVINVGMQPEVVCRDARIVPDDFSARFSAIGRRYRFQVLNTPMPSPFLSETMWWVGDPLDLASMRLACDPLIGEHDFSSFCRRPKSGDGPEVSLVRRVTRAHWSDLGDGVLRFEIDGTAFCHQMVRSIVGFHVAVGRGRRSAGELRGVLAARDRNASVSPAPPHGLTLWAVD 633 LG ++ ++GRTD GVHA G V+SFD P DP+ + +N +QP V R A + PD F ARFSA R YR+ VLN +P P L++ W+V PLDLA+MRLACDPLIGEHDF+SFCR+PK DG + +VRRV A W DLGDG+LRFEI AFCHQMVRSIVG V VG GRR AG++ GV+ ARDR+A+ APP GL LW V+ Sbjct: 64 LGRTVELTVAGRTDKGVHAHGNVVSFDAPAEGLDPQALRDALNKMLQPHVAVRHAAVAPDGFDARFSATARTYRYTVLNRDVPDPLLADRSWFVDAPLDLAAMRLACDPLIGEHDFTSFCRKPKRTDGADPVMVRRVRSARWDDLGDGLLRFEIRANAFCHQMVRSIVGLLVEVGLGRRHAGDVLGVIRARDRHAAGRLAPPQGLVLWHVE 274
BLAST of mRNA_M-pyrifera_M_contig101431.299.1 vs. uniprot
Match: UPI001AA06E5F (tRNA pseudouridine(38-40) synthase TruA n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA06E5F) HSP 1 Score: 251 bits (642), Expect = 6.420e-81 Identity = 127/217 (58.53%), Postives = 148/217 (68.20%), Query Frame = 1 Query: 10 HP-DIVMSGRTDAGVHAWGQVLSFDVPEAKADPERITRVINVGMQPEVVCRDARIVPDDFSARFSAIGRRYRFQVLNTPMPSPFLSETMWWVGDPLDLASMRLACDPLIGEHDFSSFCRRPKS------GDG-PEVSLVRRVTRAHWSDLGDGVLRFEIDGTAFCHQMVRSIVGFHVAVGRGRRSAGELRGVLAARDRNASVSPAPPHGLTLWAVDY 636 HP ++ +GRTD GVHAWGQV+SFD P A D + R IN +V R+A + P DF ARFSA R YR+ ++N P+P PFL+ T WWV PLD+A+MRL CDPLIGEHDFSSFCRRPK DG P SLVRRV A W D GDGVLRF I+ TAFCHQMVRSIVG V VG GR+ AGE+ G+L RDR+ + APP GL LW V Y Sbjct: 63 HPVELTGAGRTDRGVHAWGQVVSFDAPAAGLDLGALQRSINKLCGGTIVVREAAVAPPDFDARFSARSRTYRYTIVNRPVPDPFLAATSWWVDQPLDVAAMRLGCDPLIGEHDFSSFCRRPKDRMIGTEDDGDPGPSLVRRVIDARWDDEGDGVLRFTIEATAFCHQMVRSIVGTLVDVGLGRKRAGEVAGILRGRDRSLAGPVAPPQGLCLWRVTY 279
BLAST of mRNA_M-pyrifera_M_contig101431.299.1 vs. uniprot
Match: A0A6I3F3W4_9ACTN (tRNA pseudouridine synthase A n=2 Tax=root TaxID=1 RepID=A0A6I3F3W4_9ACTN) HSP 1 Score: 251 bits (640), Expect = 1.030e-80 Identity = 118/210 (56.19%), Postives = 150/210 (71.43%), Query Frame = 1 Query: 10 HPDIV-MSGRTDAGVHAWGQVLSFDVPEAKADPERITRVINVGMQPEVVCRDARIVPDDFSARFSAIGRRYRFQVLNTPMPSPFLSETMWWVGDPLDLASMRLACDPLIGEHDFSSFCRRPKSGDGPEVSLVRRVTRAHWSDLGDGVLRFEIDGTAFCHQMVRSIVGFHVAVGRGRRSAGELRGVLAARDRNASVSPAPPHGLTLWAVDY 636 HP I+ ++GRTDAGVHAWGQV+SFD+ +ADP + RV+N+ P +V R+ I DDF ARFSA R YR+ V+N P+P PFL+ T WWV P+D+ ++ L CDPLIG HDFSSFCR+PK+ E S++RRV A W +LGDG+LRF+I+ AFCHQMVRSIVG V +GRGR GE+ +LAARDR+ S AP GL LW V + Sbjct: 41 HPVIITIAGRTDAGVHAWGQVVSFDIRADRADPVALARVVNMACVPAIVVRECEIAADDFDARFSARSRSYRYTVINRPLPDPFLAPTTWWVPQPIDVKALHLGCDPLIGGHDFSSFCRKPKTD--LEFSMIRRVRDARWHELGDGILRFDIEANAFCHQMVRSIVGTLVDMGRGRLRPGEMATILAARDRSLSGVVAPAQGLCLWEVGF 248
BLAST of mRNA_M-pyrifera_M_contig101431.299.1 vs. uniprot
Match: A0A7Y2N713_9ACTN (tRNA pseudouridine synthase A n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2N713_9ACTN) HSP 1 Score: 248 bits (633), Expect = 6.640e-80 Identity = 130/217 (59.91%), Postives = 150/217 (69.12%), Query Frame = 1 Query: 1 LGYHPDIVMSGRTDAGVHAWGQVLSFDVPEAKADPERITRVINVGMQPEVVCRDARIVPDDFSARFSAIGRRYRFQVLNTPMPSPFLSETMWWVGDPLDLASMRLACDPLIGEHDFSSFCRRPK-SGDGPEVSLVRRVTRAHWS----DLGDGVLRFEIDGTAFCHQMVRSIVGFHVAVGRGRRSAGELRGVLAARDRNASVSPAPPHGLTLWAVDY 636 LG +I MSGRTDAGVHA QVLSFD + D R+ + IN + PEV+ + P F ARFSAIGRRYR+ VLN P PSPF + WWV PLDL +M+ AC P++GEHDF+SFCRRPK + DG +SLVRRV A WS D G LRFEI G AFCHQMVRSI G HVAVG+GRRS ++ VLAARDRNA+ SPAPP GL LW V Y Sbjct: 39 LGPISEIHMSGRTDAGVHARHQVLSFDT-DTTIDATRLAKSINSRLGPEVIATSVDVAPGSFHARFSAIGRRYRYTVLNHPHPSPFSAGFEWWVPGPLDLEAMQAACAPVVGEHDFASFCRRPKPNDDGQLISLVRRVDSAAWSEDTDDSGQRRLRFEIAGAAFCHQMVRSITGLHVAVGQGRRSPADVADVLAARDRNAAPSPAPPQGLMLWDVMY 254
BLAST of mRNA_M-pyrifera_M_contig101431.299.1 vs. uniprot
Match: A0A538B6R7_9ACTN (tRNA pseudouridine synthase A n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538B6R7_9ACTN) HSP 1 Score: 246 bits (628), Expect = 1.130e-78 Identity = 118/212 (55.66%), Postives = 149/212 (70.28%), Query Frame = 1 Query: 1 LGYHPDIVMSGRTDAGVHAWGQVLSFDVPEAKADPERITRVINVGMQPEVVCRDARIVPDDFSARFSAIGRRYRFQVLNTPMPSPFLSETMWWVGDPLDLASMRLACDPLIGEHDFSSFCRRPKSGDGPEVSLVRRVTRAHWSDLGDGVLRFEIDGTAFCHQMVRSIVGFHVAVGRGRRSAGELRGVLAARDRNASVSPAPPHGLTLWAVDY 636 LGY + +GRTD GVHAWGQV+SFD E D E + + +N + P +V RDA + F AR SA+ RRYR+ VLN P+P PFL+ T W V PLD ++ LACDP+IGEHDFSSFCR P+ P+VSLVR+V A W DLG+GVLRF+I+ AFCHQMVRS+VG V +GRGR++AG++ ++ A DR A+ PAPPHGL LW V Y Sbjct: 81 LGYPIGLTCAGRTDKGVHAWGQVVSFDAEEFGLDLEALQKSLNRMLGPAIVVRDAEKAHNSFDARRSAVARRYRYTVLNRPVPDPFLARTSWHVTAPLDCRALTLACDPVIGEHDFSSFCRLPE----PDVSLVRKVHDARWLDLGNGVLRFDIEAGAFCHQMVRSLVGTMVDIGRGRKTAGDMAAIIRAEDRAAASQPAPPHGLCLWEVVY 288
BLAST of mRNA_M-pyrifera_M_contig101431.299.1 vs. uniprot
Match: UPI001C62DF49 (tRNA pseudouridine(38-40) synthase TruA n=1 Tax=Iamia sp. SCSIO 61187 TaxID=2722752 RepID=UPI001C62DF49) HSP 1 Score: 244 bits (624), Expect = 3.120e-78 Identity = 125/217 (57.60%), Postives = 150/217 (69.12%), Query Frame = 1 Query: 1 LGYHPDIVMSGRTDAGVHAWGQVLSFDVPEAKA----DPERITRVINVGMQPEVVCRDARIVPDDFSARFSAIGRRYRFQVLNTPMPSPFLSETMWWVGDPLDLASMRLACDPLIGEHDFSSFCRRPKSGDGPEVSLVRRVTRAHWSDLGDGVLRFEIDGTAFCHQMVRSIVGFHVAVGRGRRSAGELRGVLAARDRNASVSPAPPHGLTLWAVDYP 639 LG+ +I +GRTD GVHA GQVL+ DV EA+ D + R +N PEV RD ++V D F ARFSA RRYR+++ N P P PF + W V PL LA++RLACDPLIG+HDFS+FCR+PK G E S+VRRVT A W GDG LRFEI+ +AFCH MVRSIVG VAVG GR +AG++RG LA+RDR S APPHGLTLW V YP Sbjct: 54 LGHEVEITCAGRTDRGVHAHGQVLTVDVAEARVARPGDLAALVRSVNKMCGPEVAVRDPQLVDDSFDARFSATARRYRYRIWNHPEPDPFTARQAWHVEKPLALAALRLACDPLIGQHDFSTFCRKPK-GREVEPSMVRRVTEARWIVEGDGHLRFEIEASAFCHHMVRSIVGTMVAVGVGRMTAGDVRGALASRDRARSGDMAPPHGLTLWTVRYP 269
BLAST of mRNA_M-pyrifera_M_contig101431.299.1 vs. uniprot
Match: A0A6N7FQ44_9ACTN (tRNA pseudouridine synthase A n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FQ44_9ACTN) HSP 1 Score: 242 bits (618), Expect = 2.610e-77 Identity = 118/213 (55.40%), Postives = 146/213 (68.54%), Query Frame = 1 Query: 1 LGYHPDIVMSGRTDAGVHAWGQVLSFDVPEAKADPERITRVINVGMQPEVVCRDARIVPDDFSARFSAIGRRYRFQVLNTPMPSPFLSETMWWVGDPLDLASMRLACDPLIGEHDFSSFCRRPKSGDG-PEVSLVRRVTRAHWSDLGDGVLRFEIDGTAFCHQMVRSIVGFHVAVGRGRRSAGELRGVLAARDRNASVSPAPPHGLTLWAVDY 636 L + + ++GRTDAGVHAWGQV+SFD EA D + + +N + P + R + DF ARFSA RRYR+ VLN +P PFL+ T W V LDLA++RL CD L GE DF+SFCRRP+ G G P SLVRRV A W ++ +GVLRFEI+ +AFCHQMVRSIVG V +GRGRR AGE+ G++ A DR A+ PAPPHGL LW V Y Sbjct: 65 LRHRVTLSVAGRTDAGVHAWGQVVSFDTNEAGFDATNLQQTLNKLLGPSIAVRATSVAAPDFDARFSARSRRYRYTVLNRAVPDPFLAATAWHVPAALDLAALRLGCDALYGEQDFASFCRRPREGQGHPPASLVRRVLDAGWGEVDEGVLRFEIEASAFCHQMVRSIVGTLVDMGRGRRRAGEMAGIIRAADRAAAGQPAPPHGLCLWLVRY 277
BLAST of mRNA_M-pyrifera_M_contig101431.299.1 vs. uniprot
Match: A0A7K0JT79_9ACTN (tRNA pseudouridine synthase (Fragment) n=1 Tax=Acidiferrimicrobium australe TaxID=2664430 RepID=A0A7K0JT79_9ACTN) HSP 1 Score: 240 bits (612), Expect = 1.540e-76 Identity = 119/207 (57.49%), Postives = 145/207 (70.05%), Query Frame = 1 Query: 16 DIVMSGRTDAGVHAWGQVLSFDVPEAKADPERITRVINVGMQPEVVCRDARIVPDDFSARFSAIGRRYRFQVLNTPMPSPFLSETMWWVGDPLDLASMRLACDPLIGEHDFSSFCRRPKSGDGPEVSLVRRVTRAHWSDLGDGVLRFEIDGTAFCHQMVRSIVGFHVAVGRGRRSAGELRGVLAARDRNASVSPAPPHGLTLWAVDY 636 ++V +GRTDAGVHAWGQV++ DV A AD + R +N + EVV R A F AR SA RRYR+ VLN P+ PF ++ W V PLDLA+MRLACDPL GEHDF+SFCRRP PE SLVRRV A W D GDGVLRFEI+ ++FCHQMVRS+VG V VG+G++ AGE+ G++ ARDR+A+ APP GL LW V Y Sbjct: 64 EMVCAGRTDAGVHAWGQVVTLDV-RAGADLRALVRSLNRALHGEVVVRAAAWAEPGFDARHSATSRRYRYSVLNRPVADPFRAQVTWHVERPLDLAAMRLACDPLFGEHDFASFCRRP----APEASLVRRVGDARWVDEGDGVLRFEIEASSFCHQMVRSVVGMMVEVGKGKKRAGEVAGIIGARDRSAAGGMAPPQGLCLWQVGY 265
BLAST of mRNA_M-pyrifera_M_contig101431.299.1 vs. uniprot
Match: A0A3M2GE01_ACTSX (tRNA pseudouridine synthase (Fragment) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2GE01_ACTSX) HSP 1 Score: 239 bits (611), Expect = 2.260e-76 Identity = 116/215 (53.95%), Postives = 148/215 (68.84%), Query Frame = 1 Query: 1 LGYHPDIVMSGRTDAGVHAWGQVLSFDVPEAKADPERITRVINVGMQPEVVCRDARIVPDDFSARFSAIGRRYRFQVLNTPMPSPFLSETMWWVGDPLDLASMRLACDPLIGEHDFSSFCRRPKSGDGPEVSLVRRVTRAHWSDLGDGVLRFEIDGTAFCHQMVRSIVGFHVAVGRGRRSAGELRGVLAARDRNASVSPAPPHGLTLWAVDYPDD 645 LG+ D+ +GRTD GVHA GQV+SFD ++ DP R+ + +N + P++ R DF AR S + R YR++VLNTP+ P L++ +W V PLDLA+MRLACDP+IGEHDFS+FCRR + D + SL R+V A W G GVLRF++ TAFCHQMVR++VG VAVG GRR AGE+R L ARDR+A SPAPP GL LW+ YP D Sbjct: 54 LGHEIDLSCAGRTDKGVHARGQVVSFDADASRLDPPRLAQALNRMLAPDIAVRSVAPAAPDFDARHSCVARSYRYRVLNTPVHDPLLADVVWHVARPLDLAAMRLACDPIIGEHDFSTFCRRRR--DRRDESLTRQVLAADWRREG-GVLRFDVTATAFCHQMVRALVGHMVAVGAGRRRAGEMRAALEARDRHAVASPAPPQGLVLWSAHYPPD 265 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101431.299.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig101431.299.1 >prot_M-pyrifera_M_contig101431.299.1 ID=prot_M-pyrifera_M_contig101431.299.1|Name=mRNA_M-pyrifera_M_contig101431.299.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=207bp MSGRTDAGVHAWGQVLSFDVPEAKADPERITRVINVGMQPEVVCRDARIVback to top mRNA from alignment at M-pyrifera_M_contig101431:22..666- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig101431.299.1 ID=mRNA_M-pyrifera_M_contig101431.299.1|Name=mRNA_M-pyrifera_M_contig101431.299.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=645bp|location=Sequence derived from alignment at M-pyrifera_M_contig101431:22..666- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig101431:22..666- >mRNA_M-pyrifera_M_contig101431.299.1 ID=mRNA_M-pyrifera_M_contig101431.299.1|Name=mRNA_M-pyrifera_M_contig101431.299.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1242bp|location=Sequence derived from alignment at M-pyrifera_M_contig101431:22..666- (Macrocystis pyrifera P11B4 male)back to top |