prot_M-pyrifera_M_contig11426.2972.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig11426.2972.1
Unique Nameprot_M-pyrifera_M_contig11426.2972.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length1066
Homology
BLAST of mRNA_M-pyrifera_M_contig11426.2972.1 vs. uniprot
Match: D8LKF7_ECTSI (TFIIS central domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKF7_ECTSI)

HSP 1 Score: 634 bits (1634), Expect = 5.050e-200
Identity = 589/1132 (52.03%), Postives = 656/1132 (57.95%), Query Frame = 0
Query:    1 MEPLATAGGALLLSSPAITASGGGNGASGVGXXXXXXXXXXAAMLTAVGIAPPDGVVPVATPGQPTEVPPPRLRLSDGPLSAFSTVEAVVRGVAACRQWIGGATDLTSGRG-----LDGASSFRLVQELQANRQLPYAV-----GGGLRTTLAHELSLKAPSNPELAHHLGRWACAAEAGGXXXXXXXXXXXGMAGAIDINDVDWASNSDAEVGGGSXXXXXXXXXXXXXXXXXXXSPPPALPPMINIAVEPTPAKVQRHAPSAAAVAAATGLSRT----GGGATSGVAXALATTSVARAVPPPLFTASTNSAAPSTRGSRNTRTSPFNLKACSACKKGRASPIKCRDRGPHGEKPGSPTNAATAAAAAVALEAAMANRPAGPRAKSAEA----APPVVSASSLLQRMLGTAALPAPVXXXXXXXXILAPRVAPGAPIVGGGGIKRPRCLAQGCSNAVGRDVAFCSDDCVVAVQKQAVVALIAYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAGATGSSLAANAADATAAAGAIADGPKWTEQDEQKFSKGLEAVRARAKPTAALRFRHKVMDRFRELFAEGMAELGLSSTDAVVMSGVLAWDLEHELHVFSRTNRGVYKEKAQSLRFNIKFAKNPELFKDLLTGGTSMKTLCGMSTDELASSHLKEERKRIRDESYAGHMRPEEEGNEIVYKDGALQKIDKVKSDAKKQGLAVAPASLAVAGGATGGGDKTSXXXXXXXXXXXSGTGGGAVGSRVKIELRGSGRNGGDXXXXXXXXXXXXXXXXXXXXXXXXGSGAGPVELKRRLSSSSDVGKDGGGEGGETSLTKRIKKLSA-GSPMTDDVPKLQFPSSPLPDXXXXXXXXXXXXXNLEFVGRTELEPVPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLDVPAADAERDGRDNATLQDVDNGH-LGGGGRIGSGGVGGD-----------------------------------NAGDDKD-GLRDSRFAVDDTDMXXXXXXXXXXXXXXXXXSPAAXXGSVGPGGAAGGRS----------LTPPPEVEGMTRIAPKMGRGGRAVKSENFAVNEPGREPFYVHAYHGGIPEQSADLQ 1066
            MEPLA  G  LLL            G +GV           A +L+AVGIAPP GVVP+     P  +    LRL DGPL+A STVEAV RGV ACRQW+ GAT L S  G     LDGASS RLVQELQANRQLPYAV     GGGLR TLAHELSLKAP +PELAHHLG    +                GMAGAID++DV WAS+SD +                        +PPPA  P +       P   ++H  S A  A + G         GG  S  A  L T SVARAVPPPLFT   N AAP+TRGSRN RTSPFNLKACSACKKGR S + C   GP GE+PGSP NA TAAAAA   +AA                   +P   SASSLL RMLGTAALP P         + APRVAPGAP +GG G+KR R L  GC   VGRDVAFCSDDCVV+ Q+QAV AL+AYH  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX         V                  ++G        T +DEQ F+KGLEAVRAR+  TA  RFRHKVMDRFRELFA+GMAELG+ + DA V+ G+LAWDLEHEL+ FSRTNRGVYKEKAQSLRFNIKFAKNPELFKDLL+GGTSMKTLCGMSTDELASSHLKEERKRIRDESYAGH+R E+EGNEIVYKDGALQKIDKVK++A KQ L          G  + GG K  XXXXXXXXXXX                         XXXXXXXXXXXXXXXXXXXXXXXX        LKRRLS+SSD+        G  S  KR+K+L A GSP+  DVPKL+FPS+PLP XXXXXXXXXXX                                                    P    + D  D+  L+  D G  +GGG  + S G  G                                    NA  D D GL + RF+  + D XXXXXXXXXXXXXXXXX    X   V P   +              +TPPPEVEGMTR+APK G+ GRA KSENF +NEPGREPFYVHA+HGG PE   DLQ
Sbjct:  514 MEPLAERGKTLLL------------GGTGV-----------ATLLSAVGIAPPAGVVPLLAAAPPAPL---SLRLGDGPLTALSTVEAVTRGVDACRQWVAGATALASPGGXXXXXLDGASSARLVQELQANRQLPYAVDGAGFGGGLRATLAHELSLKAPEHPELAHHLGSSVGSFGGVANGIVDDEDDAEGMAGAIDMSDVGWASSSDLD--------SAMAAIDVVGAATTTEAPPPAPAPAVY------PLAREQHRHSGATPAGSRGXXXXXXXRNGGTISARAAGLQTASVARAVPPPLFT---NPAAPTTRGSRNQRTSPFNLKACSACKKGRIS-VDC---GPDGERPGSPHNARTAAAAAAVRDAAXXXXXXXXXXXXXXXXXXRSPAAESASSLLDRMLGTAALPPPPPAPVVKAAVPAPRVAPGAPAIGGAGLKRTRKLTAGCDKPVGRDVAFCSDDCVVSAQRQAVHALVAYHQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGANGEEGVXXXXXXXXXXXXXXXXXXSSGGC------TAKDEQAFAKGLEAVRARSAQTAGQRFRHKVMDRFRELFADGMAELGVDAADAAVLCGMLAWDLEHELNAFSRTNRGVYKEKAQSLRFNIKFAKNPELFKDLLSGGTSMKTLCGMSTDELASSHLKEERKRIRDESYAGHLRQEDEGNEIVYKDGALQKIDKVKAEATKQMLE--------GGSKSKGGSKXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSELLKRRLSASSDLXXXXXXXXG--SAAKRMKRLLAVGSPIIGDVPKLEFPSAPLPXXXXXXXXXXXXP---------------------------------------------------PGPGDDSDDPDDGGLRTTDVGRGIGGGDGVESDGDEGSGNTAKRKXXXXXXXXXXXXXXXXXLPRLSSPPASPNADIDMDNGLSEPRFSATNEDXXXXXXXXXXXXXXXXXXXXXXXAKEVKPSRHSAXXXXXXXXXXXXPVTPPPEVEGMTRVAPKPGKAGRAAKSENFVINEPGREPFYVHAFHGGGPEHCVDLQ 1529          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11426.2972.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKF7_ECTSI5.050e-20052.03TFIIS central domain-containing protein (Fragment)... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003618Transcription elongation factor S-II, central domainSMARTSM00510mid_6coord: 568..670
e-value: 4.7E-8
score: 42.8
IPR003618Transcription elongation factor S-II, central domainPFAMPF07500TFIIS_Mcoord: 569..675
e-value: 7.9E-21
score: 74.6
IPR003618Transcription elongation factor S-II, central domainPROSITEPS51321TFIIS_CENTRALcoord: 570..687
score: 19.105
IPR036575Transcription elongation factor S-II, central domain superfamilyGENE3D1.10.472.30coord: 554..681
e-value: 3.3E-14
score: 55.2
IPR036575Transcription elongation factor S-II, central domain superfamilySUPERFAMILY46942Elongation factor TFIIS domain 2coord: 567..662
NoneNo IPR availablePANTHERPTHR11477TRANSCRIPTION ELONGATION FACTOR S-IIcoord: 595..685
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..1066
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig11426contigM-pyrifera_M_contig11426:268..8781 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig11426.2972.1mRNA_M-pyrifera_M_contig11426.2972.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig11426 268..8808 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig11426.2972.1 ID=prot_M-pyrifera_M_contig11426.2972.1|Name=mRNA_M-pyrifera_M_contig11426.2972.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=1066bp
MEPLATAGGALLLSSPAITASGGGNGASGVGAGGGRGGLGVAAMLTAVGI
APPDGVVPVATPGQPTEVPPPRLRLSDGPLSAFSTVEAVVRGVAACRQWI
GGATDLTSGRGLDGASSFRLVQELQANRQLPYAVGGGLRTTLAHELSLKA
PSNPELAHHLGRWACAAEAGGGWGNGEDDDDDGMAGAIDINDVDWASNSD
AEVGGGSTGSGGGIGAAGIAGAGATASPPPALPPMINIAVEPTPAKVQRH
APSAAAVAAATGLSRTGGGATSGVAAALATTSVARAVPPPLFTASTNSAA
PSTRGSRNTRTSPFNLKACSACKKGRASPIKCRDRGPHGEKPGSPTNAAT
AAAAAVALEAAMANRPAGPRAKSAEAAPPVVSASSLLQRMLGTAALPAPV
PAPPPPVPILAPRVAPGAPIVGGGGIKRPRCLAQGCSNAVGRDVAFCSDD
CVVAVQKQAVVALIAYHSKQQRVAGGGGGGGGSSAAAAGRITSGGGGGGA
GGAGGGAMMVEAGATGSSLAANAADATAAAGAIADGPKWTEQDEQKFSKG
LEAVRARAKPTAALRFRHKVMDRFRELFAEGMAELGLSSTDAVVMSGVLA
WDLEHELHVFSRTNRGVYKEKAQSLRFNIKFAKNPELFKDLLTGGTSMKT
LCGMSTDELASSHLKEERKRIRDESYAGHMRPEEEGNEIVYKDGALQKID
KVKSDAKKQGLAVAPASLAVAGGATGGGDKTSGKGSKKARKGSSGTGGGA
VGSRVKIELRGSGRNGGDDDDDDEEEEGEAGGGRGGGGRGRRGSGAGPVE
LKRRLSSSSDVGKDGGGEGGETSLTKRIKKLSAGSPMTDDVPKLQFPSSP
LPDFPSSPLPDFPSSPNLEFVGRTELEPVPSPPGPEDDDDDDSEGDGSSP
GEGRGGEGGRGEGLDVPAADAERDGRDNATLQDVDNGHLGGGGRIGSGGV
GGDNAGDDKDGLRDSRFAVDDTDMDLDEDEPTAAAKAAGSGSPAAAAGSV
GPGGAAGGRSLTPPPEVEGMTRIAPKMGRGGRAVKSENFAVNEPGREPFY
VHAYHGGIPEQSADLQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003618TFIIS_cen_dom
IPR036575TFIIS_cen_dom_sf