mRNA_M-pyrifera_M_contig11426.2972.1 (mRNA) Macrocystis pyrifera P11B4 male
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Overview
Homology
BLAST of mRNA_M-pyrifera_M_contig11426.2972.1 vs. uniprot
Match: D8LKF7_ECTSI (TFIIS central domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKF7_ECTSI) HSP 1 Score: 645 bits (1664), Expect = 2.900e-204 Identity = 594/1141 (52.06%), Postives = 663/1141 (58.11%), Query Frame = 1
Query: 1 SDSRPRLTDMEPLATAGGALLLSSPAITASGGGNGASGVGXXXXXXXXXXAAMLTAVGIAPPDGVVPVATPGQPTEVPPPRLRLSDGPLSAFSTVEAVVRGVAACRQWIGGATDLTSGRG-----LDGASSFRLVQELQANRQLPYAV-----GGGLRTTLAHELSLKAPSNPELAHHLGRWACAAEAGGXXXXXXXXXXXGMAGAIDINDVDWASNSDAEVGGGSXXXXXXXXXXXXXXXXXXXSPPPALPPMINIAVEPTPAKVQRHAPSAAAVAAATGLSRT----GGGATSGVAXALATTSVARAVPPPLFTASTNSAAPSTRGSRNTRTSPFNLKACSACKKGRASPIKCRDRGPHGEKPGSPTNAATAAAAAVALEAAMANRPAGPRAKSAEA----APPVVSASSLLQRMLGTAALPAPVXXXXXXXXILAPRVAPGAPIVGGGGIKRPRCLAQGCSNAVGRDVAFCSDDCVVAVQKQAVVALIAYHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVEAGATGSSLAANAADATAAAGAIADGPKWTEQDEQKFSKGLEAVRARAKPTAALRFRHKVMDRFRELFAEGMAELGLSSTDAVVMSGVLAWDLEHELHVFSRTNRGVYKEKAQSLRFNIKFAKNPELFKDLLTGGTSMKTLCGMSTDELASSHLKEERKRIRDESYAGHMRPEEEGNEIVYKDGALQKIDKVKSDAKKQGLAVAPASLAVAGGATGGGDKTSXXXXXXXXXXXSGTGGGAVGSRVKIELRGSGRNGGDXXXXXXXXXXXXXXXXXXXXXXXXGSGAGPVELKRRLSSSSDVGKDGGGEGGETSLTKRIKKLSA-GSPMTDDVPKLQFPSSPLPDXXXXXXXXXXXXXNLEFVGRTELEPVPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLDVPAADAERDGRDNATLQDVDNGH-LGGGGRIGSGGVGGD-----------------------------------NAGDDKD-GLRDSRFAVDDTDMXXXXXXXXXXXXXXXXXSPAAXXGSVGPGGAAGGRS----------LTPPPEVEGMTRIAPKMGRGGRAVKSENFAVNEPGREPFYVHAYHGGIPEQSADLQ 3225
++SRP TDMEPLA G LLL G +GV A +L+AVGIAPP GVVP+ P + LRL DGPL+A STVEAV RGV ACRQW+ GAT L S G LDGASS RLVQELQANRQLPYAV GGGLR TLAHELSLKAP +PELAHHLG + GMAGAID++DV WAS+SD + +PPPA P + P ++H S A A + G GG S A L T SVARAVPPPLFT N AAP+TRGSRN RTSPFNLKACSACKKGR S + C GP GE+PGSP NA TAAAAA +AA +P SASSLL RMLGTAALP P + APRVAPGAP +GG G+KR R L GC VGRDVAFCSDDCVV+ Q+QAV AL+AYH XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX V ++G T +DEQ F+KGLEAVRAR+ TA RFRHKVMDRFRELFA+GMAELG+ + DA V+ G+LAWDLEHEL+ FSRTNRGVYKEKAQSLRFNIKFAKNPELFKDLL+GGTSMKTLCGMSTDELASSHLKEERKRIRDESYAGH+R E+EGNEIVYKDGALQKIDKVK++A KQ L G + GG K XXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXX LKRRLS+SSD+ G S KR+K+L A GSP+ DVPKL+FPS+PLP XXXXXXXXXXX P + D D+ L+ D G +GGG + S G G NA D D GL + RF+ + D XXXXXXXXXXXXXXXXX X V P + +TPPPEVEGMTR+APK G+ GRA KSENF +NEPGREPFYVHA+HGG PE DLQ
Sbjct: 505 NESRPAFTDMEPLAERGKTLLL------------GGTGV-----------ATLLSAVGIAPPAGVVPLLAAAPPAPL---SLRLGDGPLTALSTVEAVTRGVDACRQWVAGATALASPGGXXXXXLDGASSARLVQELQANRQLPYAVDGAGFGGGLRATLAHELSLKAPEHPELAHHLGSSVGSFGGVANGIVDDEDDAEGMAGAIDMSDVGWASSSDLD--------SAMAAIDVVGAATTTEAPPPAPAPAVY------PLAREQHRHSGATPAGSRGXXXXXXXRNGGTISARAAGLQTASVARAVPPPLFT---NPAAPTTRGSRNQRTSPFNLKACSACKKGRIS-VDC---GPDGERPGSPHNARTAAAAAAVRDAAXXXXXXXXXXXXXXXXXXRSPAAESASSLLDRMLGTAALPPPPPAPVVKAAVPAPRVAPGAPAIGGAGLKRTRKLTAGCDKPVGRDVAFCSDDCVVSAQRQAVHALVAYHQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVGANGEEGVXXXXXXXXXXXXXXXXXXSSGGC------TAKDEQAFAKGLEAVRARSAQTAGQRFRHKVMDRFRELFADGMAELGVDAADAAVLCGMLAWDLEHELNAFSRTNRGVYKEKAQSLRFNIKFAKNPELFKDLLSGGTSMKTLCGMSTDELASSHLKEERKRIRDESYAGHLRQEDEGNEIVYKDGALQKIDKVKAEATKQMLE--------GGSKSKGGSKXXXXXXXXXXXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSELLKRRLSASSDLXXXXXXXXG--SAAKRMKRLLAVGSPIIGDVPKLEFPSAPLPXXXXXXXXXXXXP---------------------------------------------------PGPGDDSDDPDDGGLRTTDVGRGIGGGDGVESDGDEGSGNTAKRKXXXXXXXXXXXXXXXXXLPRLSSPPASPNADIDMDNGLSEPRFSATNEDXXXXXXXXXXXXXXXXXXXXXXXAKEVKPSRHSAXXXXXXXXXXXXPVTPPPEVEGMTRVAPKPGKAGRAAKSENFVINEPGREPFYVHAFHGGGPEHCVDLQ 1529 The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig11426.2972.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig11426.2972.1 >prot_M-pyrifera_M_contig11426.2972.1 ID=prot_M-pyrifera_M_contig11426.2972.1|Name=mRNA_M-pyrifera_M_contig11426.2972.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=1066bp MEPLATAGGALLLSSPAITASGGGNGASGVGAGGGRGGLGVAAMLTAVGIback to top mRNA from alignment at M-pyrifera_M_contig11426:268..8808- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_M-pyrifera_M_contig11426.2972.1 ID=mRNA_M-pyrifera_M_contig11426.2972.1|Name=mRNA_M-pyrifera_M_contig11426.2972.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=8541bp|location=Sequence derived from alignment at M-pyrifera_M_contig11426:268..8808- (Macrocystis pyrifera P11B4 male)back to top Coding sequence (CDS) from alignment at M-pyrifera_M_contig11426:268..8808- >mRNA_M-pyrifera_M_contig11426.2972.1 ID=mRNA_M-pyrifera_M_contig11426.2972.1|Name=mRNA_M-pyrifera_M_contig11426.2972.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=6396bp|location=Sequence derived from alignment at M-pyrifera_M_contig11426:268..8808- (Macrocystis pyrifera P11B4 male)back to top |