mRNA_M-pyrifera_M_contig114202.2960.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114202.2960.1
Unique NamemRNA_M-pyrifera_M_contig114202.2960.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114202.2960.1 vs. uniprot
Match: A0A7S1GAV0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1GAV0_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.670e-20
Identity = 48/118 (40.68%), Postives = 76/118 (64.41%), Query Frame = 1
Query:    4 AFLQTPSGTSFDPEADTYFASLRTVANLKRFSILINSINCFLAFFKLTKFVSISPEYSMVTGTLSRASGPALRFLLIFLIVIFGFASAHMLAFGTNVEGFRNASSSTYTLIQSLLGDF 357
            AF   P   +   +AD ++   R  +  K  S+  NS+N FL +FKL +++S  P +++VTGTL +++     F ++F +V +GFA+AHM+ FG  V G+RN +SS YTL++SLLG+F
Sbjct:  407 AFFCLPDRDTIALDADVFY-QFRMASVYKSLSLYFNSLNAFLCWFKLVRYLSYIPRFALVTGTLVKSARGVSGFGVVFCVVFYGFAAAHMMTFGARVHGYRNLTSSVYTLLKSLLGEF 523          
BLAST of mRNA_M-pyrifera_M_contig114202.2960.1 vs. uniprot
Match: A0A7S1CC16_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CC16_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.480e-19
Identity = 44/105 (41.90%), Postives = 75/105 (71.43%), Query Frame = 1
Query:   43 EADTYFASLRTVANLKRFSILINSINCFLAFFKLTKFVSISPEYSMVTGTLSRASGPALRFLLIFLIVIFGFASAHMLAFGTNVEGFRNASSSTYTLIQSLLGDF 357
            ++DT++ S R+ A  K  S+  N+ N FLA+FKLT ++S  P +++VTGTL R+      F++IF ++ +GF++AHM+ FG ++EG+RN   + ++L+++LLGDF
Sbjct:  496 DSDTFY-SFRSAAVYKALSLYCNACNAFLAWFKLTSYLSYFPRFALVTGTLRRSLQAVGGFIVIFCVLFYGFSAAHMMTFGPSLEGYRNMMQTAFSLLRALLGDF 599          
BLAST of mRNA_M-pyrifera_M_contig114202.2960.1 vs. uniprot
Match: A0A813B7D7_9DINO (Pkd2 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813B7D7_9DINO)

HSP 1 Score: 89.4 bits (220), Expect = 2.290e-19
Identity = 46/114 (40.35%), Postives = 75/114 (65.79%), Query Frame = 1
Query:   16 TPSGTSFDPEADTYFASLRTVANLKRFSILINSINCFLAFFKLTKFVSISPEYSMVTGTLSRASGPALRFLLIFLIVIFGFASAHMLAFGTNVEGFRNASSSTYTLIQSLLGDF 357
            TP   S   ++D Y+      A  K  S+++N IN FL +F+L ++++  PE ++V GTL R++     F +IF++V +GFA+AHM+ FG  ++ FRN ++S +TLI+SLLG+F
Sbjct:   88 TPDAASVVVDSDVYY-DFYVAALWKSTSVMLNGINAFLCWFRLVRYLAHLPELALVIGTLERSARRLASFGVIFVVVFYGFAAAHMMTFGFKLKEFRNLTASGFTLIESLLGEF 200          
BLAST of mRNA_M-pyrifera_M_contig114202.2960.1 vs. uniprot
Match: A0A0L0DRG2_THETB (Polycystic kidney disease 2 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DRG2_THETB)

HSP 1 Score: 75.1 bits (183), Expect = 2.350e-13
Identity = 43/119 (36.13%), Postives = 69/119 (57.98%), Query Frame = 1
Query:    1 IAFLQTPSGTSFDPEADTYFASLRTVANLKRFSILINSINCFLAFFKLTKFVSISPEYSMVTGTLSRASGPALRFLLIFLIVIFGFASAHMLAFGTNVEGFRNASSSTYTLIQSLLGDF 357
            IA + T    + DP A T F + +T+  L      I + N F+ +FK+ K+    P    V+ T++R+    + F+ + + V+FGFA A +LAFG++VE FR+   + YTL++ LLGDF
Sbjct:  358 IALVATFEKMNLDPRATTRFYNFQTLVLLNSAENNILASNAFILWFKVYKYTKFFPPMRTVSDTIARSIQNTIGFVAVVMFVLFGFAQAGVLAFGSDVEDFRSFIDTFYTLLRLLLGDF 476          
BLAST of mRNA_M-pyrifera_M_contig114202.2960.1 vs. uniprot
Match: A0A0L0DI24_THETB (Polycystic kidney disease 2 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DI24_THETB)

HSP 1 Score: 67.8 bits (164), Expect = 8.630e-11
Identity = 39/119 (32.77%), Postives = 65/119 (54.62%), Query Frame = 1
Query:    1 IAFLQTPSGTSFDPEADTYFASLRTVANLKRFSILINSINCFLAFFKLTKFVSISPEYSMVTGTLSRASGPALRFLLIFLIVIFGFASAHMLAFGTNVEGFRNASSSTYTLIQSLLGDF 357
            IA L   +    DP     F + + ++ L      I ++N F+ +FK+ K+    P   ++  T+S++    + F+ +   V+FGFA A +LAFGT+V GF     + +TL++SLLGDF
Sbjct:  380 IAILIKLNNLEVDPTNTRKFYNFQPISLLNSAEQNILAVNAFILWFKVFKYTKFLPGMDIIAETVSKSIRNTVSFVAMMAFVLFGFAQAGVLAFGTDVPGFHTFIDTFFTLLRSLLGDF 498          
BLAST of mRNA_M-pyrifera_M_contig114202.2960.1 vs. uniprot
Match: A0A7S3DBA3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DBA3_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 1.570e-10
Identity = 39/105 (37.14%), Postives = 58/105 (55.24%), Query Frame = 1
Query:   43 EADTYFASLRTVANLKRFSILINSINCFLAFFKLTKFVSISPEYSMVTGTLSRASGPALRFLLIFLIVIFGFASAHMLAFGTNVEGFRNASSSTYTLIQSLLGDF 357
            EAD     L  + NL +    +N        FK  K+  I P  ++++ TL R++     F  +F +V+FGFA AH LA+G+N+  FRN   S +TL ++LLGDF
Sbjct:  310 EADIQLYQLSDLVNLAQ---NVNXXXXXXXXFKSFKYFRIYPRLTILSNTLYRSASDVATFSAMFCVVLFGFAVAHYLAYGSNIYEFRNWQQSAFTLFRALLGDF 411          
BLAST of mRNA_M-pyrifera_M_contig114202.2960.1 vs. uniprot
Match: A0A7S3DBS8_9EUKA (Hypothetical protein n=2 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DBS8_9EUKA)

HSP 1 Score: 67.0 bits (162), Expect = 1.590e-10
Identity = 39/105 (37.14%), Postives = 58/105 (55.24%), Query Frame = 1
Query:   43 EADTYFASLRTVANLKRFSILINSINCFLAFFKLTKFVSISPEYSMVTGTLSRASGPALRFLLIFLIVIFGFASAHMLAFGTNVEGFRNASSSTYTLIQSLLGDF 357
            EAD     L  + NL +    +N        FK  K+  I P  ++++ TL R++     F  +F +V+FGFA AH LA+G+N+  FRN   S +TL ++LLGDF
Sbjct:  493 EADIQLYQLSDLVNLAQ---NVNXXXXXXXXFKSFKYFRIYPRLTILSNTLYRSASDVATFSAMFCVVLFGFAVAHYLAYGSNIYEFRNWQQSAFTLFRALLGDF 594          
BLAST of mRNA_M-pyrifera_M_contig114202.2960.1 vs. uniprot
Match: A0A0L0D9F5_THETB (Polycystin 2 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D9F5_THETB)

HSP 1 Score: 62.4 bits (150), Expect = 6.750e-9
Identity = 35/105 (33.33%), Postives = 62/105 (59.05%), Query Frame = 1
Query:   43 EADTYFASLRTVANLKRFSILINSINCFLAFFKLTKFVSISPEYSMVTGTLSRASGPALRFLLIFLIVIFGFASAHMLAFGTNVEGFRNASSSTYTLIQSLLGDF 357
            +++  + +L+ VA +    I IN+IN  L + K  K+++       ++ TL RA+   + F+++FLI+ FG+A A  + F  +VEGFR    S  +L+ S+LG+F
Sbjct:  384 KSNAAYFNLQGVALMATQEININAINMLLCWIKTLKYLNHFDRIHQLSETLVRAAADTVLFMIMFLIIFFGYAQAGYMMFSADVEGFRTIFRSMESLVLSILGEF 488          
BLAST of mRNA_M-pyrifera_M_contig114202.2960.1 vs. uniprot
Match: A0A7S0N1G4_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N1G4_9CRYP)

HSP 1 Score: 50.4 bits (119), Expect = 9.830e-5
Identity = 31/83 (37.35%), Postives = 49/83 (59.04%), Query Frame = 1
Query:  109 NSINCFLAFFKLTKFVSISPEYSMVTGTLSRASGPALRFLLIFLIVIFGFASAHMLAFGTNVEGFRNASSSTYTLIQSLLGDF 357
            N+I  +L  F   K+VS   E + ++ TL+RA      FL+IF  VIF +A A  ++FGT++  +    S+ + L ++LLGDF
Sbjct:  165 NNIFVWLRAFAFLKYVS--KEVANLSYTLTRAGKDCALFLVIFCFVIFAYAQAFHISFGTDISDYSTLLSAIFGLFKTLLGDF 245          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114202.2960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A7S1GAV0_9STRA1.670e-2040.68Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S1CC16_9STRA1.480e-1941.90Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A813B7D7_9DINO2.290e-1940.35Pkd2 protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A0L0DRG2_THETB2.350e-1336.13Polycystic kidney disease 2 n=1 Tax=Thecamonas tra... [more]
A0A0L0DI24_THETB8.630e-1132.77Polycystic kidney disease 2 n=1 Tax=Thecamonas tra... [more]
A0A7S3DBA3_9EUKA1.570e-1037.14Hypothetical protein (Fragment) n=1 Tax=Palpitomon... [more]
A0A7S3DBS8_9EUKA1.590e-1037.14Hypothetical protein n=2 Tax=Palpitomonas bilix Ta... [more]
A0A0L0D9F5_THETB6.750e-933.33Polycystin 2 n=1 Tax=Thecamonas trahens ATCC 50062... [more]
A0A7S0N1G4_9CRYP9.830e-537.35Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114202contigM-pyrifera_M_contig114202:3..359 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue9.4e-11
Seed eggNOG ortholog529818.AMSG_10573T0
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.detection of mechanical stimulus
EggNOG OGsKOG3599@1,KOG3599@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815657.8614361-CDS-M-pyrifera_M_contig114202:2..3591622815657.8614361-CDS-M-pyrifera_M_contig114202:2..359Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114202 3..359 -
1692277508.2989547-CDS-M-pyrifera_M_contig114202:2..3591692277508.2989547-CDS-M-pyrifera_M_contig114202:2..359Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114202 3..359 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114202.2960.1prot_M-pyrifera_M_contig114202.2960.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114202 3..359 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114202.2960.1

>prot_M-pyrifera_M_contig114202.2960.1 ID=prot_M-pyrifera_M_contig114202.2960.1|Name=mRNA_M-pyrifera_M_contig114202.2960.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=119bp
IAFLQTPSGTSFDPEADTYFASLRTVANLKRFSILINSINCFLAFFKLTK
FVSISPEYSMVTGTLSRASGPALRFLLIFLIVIFGFASAHMLAFGTNVEG
FRNASSSTYTLIQSLLGDF
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mRNA from alignment at M-pyrifera_M_contig114202:3..359-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114202.2960.1 ID=mRNA_M-pyrifera_M_contig114202.2960.1|Name=mRNA_M-pyrifera_M_contig114202.2960.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=357bp|location=Sequence derived from alignment at M-pyrifera_M_contig114202:3..359- (Macrocystis pyrifera P11B4 male)
ATCGCCTTTCTCCAGACCCCATCTGGAACATCATTTGACCCCGAGGCAGA CACTTATTTTGCATCACTTCGAACGGTTGCAAACTTGAAGCGATTCTCAA TCTTGATCAACTCGATCAACTGCTTCTTGGCCTTTTTCAAGCTAACAAAA TTCGTCTCCATCTCTCCCGAATACTCCATGGTAACTGGAACTCTTTCCCG TGCAAGTGGACCTGCGCTTCGCTTCCTTCTCATTTTCCTCATTGTGATCT TTGGTTTTGCATCTGCTCATATGCTTGCATTTGGAACAAATGTCGAAGGC TTCCGAAATGCGTCTTCCTCTACATACACCCTCATCCAATCCTTGCTTGG AGATTTT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114202:3..359-

>mRNA_M-pyrifera_M_contig114202.2960.1 ID=mRNA_M-pyrifera_M_contig114202.2960.1|Name=mRNA_M-pyrifera_M_contig114202.2960.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=714bp|location=Sequence derived from alignment at M-pyrifera_M_contig114202:3..359- (Macrocystis pyrifera P11B4 male)
ATCGCCTTTCTCCAGACCCCATCTGGAACATCATTTGACCCCGAGGCAGA
CACTTATTTTGCATCACTTCGAACGGTTGCAAACTTGAAGCGATTCTCAA
TCTTGATCAACTCGATCAACTGCTTCTTGGCCTTTTTCAAGCTAACAAAA
TTCGTCTCCATCTCTCCCGAATACTCCATGGTAACTGGAACTCTTTCCCG
TGCAAGTGGACCTGCGCTTCGCTTCCTTCTCATTTTCCTCATTGTGATCT
TTGGTTTTGCATCTGCTCATATGCTTGCATTTGGAACAAATGTCGAAGGC
TTCCGAAATGCGTCTTCCTCTACATACACCCTCATCCAATCCTTGCTTGG
AGATTTTATCGCCTTTCTCCAGACCCCATCTGGAACATCATTTGACCCCG
AGGCAGACACTTATTTTGCATCACTTCGAACGGTTGCAAACTTGAAGCGA
TTCTCAATCTTGATCAACTCGATCAACTGCTTCTTGGCCTTTTTCAAGCT
AACAAAATTCGTCTCCATCTCTCCCGAATACTCCATGGTAACTGGAACTC
TTTCCCGTGCAAGTGGACCTGCGCTTCGCTTCCTTCTCATTTTCCTCATT
GTGATCTTTGGTTTTGCATCTGCTCATATGCTTGCATTTGGAACAAATGT
CGAAGGCTTCCGAAATGCGTCTTCCTCTACATACACCCTCATCCAATCCT
TGCTTGGAGATTTT
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