mRNA_M-pyrifera_M_contig114056.2929.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig114056.2929.1
Unique NamemRNA_M-pyrifera_M_contig114056.2929.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig114056.2929.1 vs. uniprot
Match: A0A3C2A2J3_9BACT (Uncharacterized protein n=3 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3C2A2J3_9BACT)

HSP 1 Score: 192 bits (487), Expect = 1.230e-58
Identity = 90/187 (48.13%), Postives = 124/187 (66.31%), Query Frame = 1
Query:    1 IPLLSRKKRAPRQIIDESWSTRDAILDSDVNLFCWKRSMETTISGYLEQLLEKELSPI-IFHTTIGELDKKVANERLSWDQSSLQTGTLFWQDVSRLIADFLAYSSDQSGTVHLKVIEDNACTKFHTDGYPLRLFTTYLGKGTEWLPERAVNRSRLGKSNDQIVRDVSKIRRMDTCEVGILKGEVPN 558
            + LLS K   PRQ++ + W  R+ IL   VNL+CW+R M   I  +L Q + ++L  I     T   +  ++   R +W+      G  FWQD+  +  DFLA+S + SG +HLKV+ D+AC KFHTDGY LRLFTTY G+GTEWLPERA NR+ LGK+N++IV+D + ++RM+  +VGILKGEVPN
Sbjct:    7 LSLLSGKTLPPRQVLSDRWEDRETILQPQVNLYCWQRPMNPAILAHLGQQMRQDLPAISCLRVTQKHIAAQLGEARTAWEPEPSHGGDSFWQDLIMITRDFLAFSKNGSGQIHLKVVRDDACRKFHTDGYRLRLFTTYYGRGTEWLPERATNRAALGKNNEKIVKDPALVKRMEPFQVGILKGEVPN 193          
BLAST of mRNA_M-pyrifera_M_contig114056.2929.1 vs. uniprot
Match: UPI00162495DE (DUF1826 domain-containing protein n=1 Tax=Fulvivirga aurantia TaxID=2529383 RepID=UPI00162495DE)

HSP 1 Score: 180 bits (457), Expect = 3.920e-54
Identity = 86/186 (46.24%), Postives = 120/186 (64.52%), Query Frame = 1
Query:    1 IPLLSRKKRAPRQIIDESWSTRDAILDSDVNLFCWKRSMETTISGYLEQLLEKELSPIIFHTTIGELDKKVANERLSWDQSSLQTGTLFWQDVSRLIADFLAYSSDQSGTVHLKVIEDNACTKFHTDGYPLRLFTTYLGKGTEWLPERAVNRSRLGKSNDQIVRDVSKIRRMDTCEVGILKGEVPN 558
            IP   R   AP+Q+    W  R+ IL   VNLFCWKRS++ +IS Y+++    E  PI  +     L +++   +L W  S +     FWQDV +++ DFL +S  ++GT+HLKVI+++AC KFH DGY LRLF TY G GTEWLPE AVNRS LG  N++IV++   ++R+ T  V ILKG++PN
Sbjct:    7 IPFYKRSTNAPKQVTSSKWFHRNTILTDQVNLFCWKRSLDPSISQYIKKTAALEPEPIRRYVDRNNLHEQIEAAKLEW--SHIPDSQPFWQDVYKIVNDFLGFSKTETGTLHLKVIDNDACRKFHVDGYALRLFVTYHGPGTEWLPEGAVNRSALGTVNERIVKNKEAVQRIPTGHVAILKGQLPN 190          
BLAST of mRNA_M-pyrifera_M_contig114056.2929.1 vs. uniprot
Match: A0A3B8ISH0_9BACT (Uncharacterized protein n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3B8ISH0_9BACT)

HSP 1 Score: 149 bits (375), Expect = 1.190e-42
Identity = 66/117 (56.41%), Postives = 88/117 (75.21%), Query Frame = 1
Query:  208 KVANERLSWDQSSLQTGTLFWQDVSRLIADFLAYSSDQSGTVHLKVIEDNACTKFHTDGYPLRLFTTYLGKGTEWLPERAVNRSRLGKSNDQIVRDVSKIRRMDTCEVGILKGEVPN 558
            ++   R +W+      G  FWQD+  +  DFLA+S + SG +HLKV+ D+AC KFHTDGY LRLFTTY G+GTEWLPERA NR+ LGK+N++IV+D + ++RM+  +VGILKGEVPN
Sbjct:    4 QLGEARTAWEPEPSHGGDSFWQDLIMITRDFLAFSKNGSGQIHLKVVRDDACRKFHTDGYRLRLFTTYYGRGTEWLPERATNRAALGKNNEKIVKDPALVKRMEPFQVGILKGEVPN 120          
BLAST of mRNA_M-pyrifera_M_contig114056.2929.1 vs. uniprot
Match: UPI000D6E97C9 (DUF1826 domain-containing protein n=1 Tax=Reichenbachiella versicolor TaxID=1821036 RepID=UPI000D6E97C9)

HSP 1 Score: 147 bits (372), Expect = 3.000e-41
Identity = 73/186 (39.25%), Postives = 105/186 (56.45%), Query Frame = 1
Query:    1 IPLLSRKKRAPRQIIDESWSTRDAILDSDVNLFCWKRSMETTISGYLEQLLEKELSPIIFHTTIGELDKKVANERLSWDQ---SSLQTGTLFWQDVSRLIADFLAYSSDQSGTVHLKVIEDNACTKFHTDGYPLRLFTTYLGKGTEWLPERAVNRSRLGKSNDQIVRDVSKIRRMDTCEVGILKGE 549
            IP L      P Q+  +SW     I  SDVNLFCW R  + +IS Y+ + +   +S I        ++  +      W+    +S  +G  FW D+  L  DFL  +      +HL +++D  CT+FH D +  +LF TY G G EWLPE+AVNR  LGKSN+ I++D S+I++M+T EVGILKG+
Sbjct:    7 IPSLDSILGGPVQVSSKSWENHQIIKQSDVNLFCWTRDYDQSISSYIYEAVINNVSEINVKVETASIEDILITASNQWNSIISTSNTSGNDFWNDILFLTTDFLKLTEKPGCNLHLGIVDDETCTQFHIDQFDYKLFCTYYGSGIEWLPEKAVNREGLGKSNELIIKDSSEIQKMETFEVGILKGD 192          
BLAST of mRNA_M-pyrifera_M_contig114056.2929.1 vs. uniprot
Match: A0A385SSQ1_9BACT (DUF1826 domain-containing protein n=2 Tax=Chryseolinea soli TaxID=2321403 RepID=A0A385SSQ1_9BACT)

HSP 1 Score: 108 bits (270), Expect = 4.720e-26
Identity = 65/163 (39.88%), Postives = 92/163 (56.44%), Query Frame = 1
Query:   73 ILDSDVNLFCWKRSMETTISGYLEQLLEKELSPIIFHTTIGELDKKVANERLSWDQSSLQTGTLFWQDVSRLIADFLAYSSDQSGTVHLKVIEDNACTKFHTDGYPLRLFTTYLGKGTEWLPERAVNRSRLGK-SNDQIVRDVSKIRRMDTCEVGILKGEVPN 558
            I D  VN   +KR ++  I  ++  L+E + + I    T   + K +A  RLS D + L     F QD+  +   F   +  Q   + LKV+ D+AC KFHTD Y LRL  TY G GTEW+ +R VN+ +L   SN  I+RD SK+++ +  EV ILKGEVP+
Sbjct:   27 IHDPYVNFVYYKRPIDDDIELFIWYLIENDFNGISESVTPHNVAKTLA-ARLSNDDAHLLWKRKFMQDILNITQVFFNITKAQQIQLILKVVSDDACRKFHTDAYDLRLLCTYQGSGTEWIEDRYVNQKKLVTGSNKDIIRDFSKVKQTEPFEVAILKGEVPS 188          
BLAST of mRNA_M-pyrifera_M_contig114056.2929.1 vs. uniprot
Match: A0A6N4EAA0_9RHOO (Uncharacterized protein n=1 Tax=Azospira oryzae TaxID=146939 RepID=A0A6N4EAA0_9RHOO)

HSP 1 Score: 108 bits (269), Expect = 1.720e-25
Identity = 62/166 (37.35%), Postives = 93/166 (56.02%), Query Frame = 1
Query:   73 ILDSDVNLFCWKRSMETTISGYLEQLLEKELSPIIFHTTIGELDKKVANERLSWDQSSLQTGTLFWQDVSRLIADFLAYSSDQSGTVHLKVIEDNACTKFHTDGYPLRLFTTYLGKGTEWLPERAVNRSRLGKS-NDQIVRDVSKIRRMDTCEVGILKGEVPNGSN 567
            IL  +VNL  +KR+ +  I  Y+  L+++    I        L   ++N+ +    +SL    +  +D+  + + F   +      + LK++ D+AC KFHTD Y LRL  TY GKGTEW+ +R VNR +L +  N  I+RD +KIR M+  EV ILKGEVP+  N
Sbjct:   69 ILHPNVNLVYYKRTPDREIDSYIRLLMQRPFKGITTVINQQNLATVISNQLMDVGSTSLGKSRM-QEDIIAMASVFFKITGAAHLRLILKIVADDACRKFHTDAYDLRLLCTYSGKGTEWVNDRFVNRKKLFRGENKDIIRDATKIRCMEPFEVAILKGEVPSRPN 233          
BLAST of mRNA_M-pyrifera_M_contig114056.2929.1 vs. uniprot
Match: A0A7Y4R2N5_9BACT (DUF1826 domain-containing protein n=1 Tax=Cyclobacteriaceae bacterium TaxID=2099675 RepID=A0A7Y4R2N5_9BACT)

HSP 1 Score: 105 bits (263), Expect = 5.060e-25
Identity = 62/178 (34.83%), Postives = 95/178 (53.37%), Query Frame = 1
Query:   25 RAPRQIIDESWSTRDAILDSDVNLFCWKRSMETTISGYLEQLLEKELSPIIFHTTIGELDKKVANERLSWDQSSLQT--GTLFWQDVSRLIADFLAYSSDQSGTVHLKVIEDNACTKFHTDGYPLRLFTTYLGKGTEWLPERAVNRSRL-GKSNDQIVRDVSKIRRMDTCEVGILKGE 549
            R P  ++  +    + I D +VN   W+R  +  I  +   LL    +      T   + +++  E   +D+S++ T    L   D+  L   FL+ +      ++LK + D+AC KFHTD Y LRL  TY+G GTEW+ +R VNR RL G  N+ I++D SK++ M   EVGIL+GE
Sbjct:   10 RKPYSLLVPAMLDLEKISDPEVNFVHWQRLPDEDIHQFGNALLTSAFTGFSLTATAQTVREQLQEE---FDKSAIHTVGKLLLVDDMVALTCQFLSITGQPQTRLYLKAVSDDACRKFHTDRYDLRLLCTYVGAGTEWIDDRYVNRHRLMGGDNESIIKDFSKVKCMQPFEVGILRGE 184          
BLAST of mRNA_M-pyrifera_M_contig114056.2929.1 vs. uniprot
Match: A0A2T4DQG3_9BACT (Uncharacterized protein n=2 Tax=Marivirga lumbricoides TaxID=1046115 RepID=A0A2T4DQG3_9BACT)

HSP 1 Score: 104 bits (259), Expect = 2.130e-24
Identity = 63/187 (33.69%), Postives = 97/187 (51.87%), Query Frame = 1
Query:    7 LLSRKKRAPRQIIDESW-STRDAILDSDVNLFCWKRSMETTISGYLEQLLEKELSPIIFHTTIGELDKKVANERLSWDQSSLQTGTLFW-----QDVSRLIADFLAYSSDQSGTVHLKVIEDNACTKFHTDGYPLRLFTTYLGKGTEWLPERAVNRSRLGKSNDQIVRDVSKIRRMDTCEVGILKGE 549
            +L+  K+     IDE W +  +A  ++D NL  W+R +   I   ++ L       +     IG +++ +        +S+L T           D+  L   FL  +  ++  +HL+++ DNAC+KFH DGY  RL  TY G GT+WL +  V R  LGK+N  IV++ SKI +M   EVG+LKGE
Sbjct:    5 MLNILKKKLNYTIDEDWIAIEEAFHNADFNLVVWRRGINPNIVRLIKFLYTTNFRKLQQKINIGTIEEDLTFTL----KSNLPTSPFISYEDLKDDLCLLCYHFLQLTGKENVDMHLRIVTDNACSKFHVDGYESRLLCTYDGAGTQWLSDDNVRRHFLGKTNSDIVKNESKIMQMQPFEVGLLKGE 187          
BLAST of mRNA_M-pyrifera_M_contig114056.2929.1 vs. uniprot
Match: A0A395LZS2_9BACT (DUF1826 domain-containing protein n=1 Tax=Candidatus Thermochlorobacter aerophilum TaxID=1868324 RepID=A0A395LZS2_9BACT)

HSP 1 Score: 92.4 bits (228), Expect = 6.260e-20
Identity = 60/163 (36.81%), Postives = 88/163 (53.99%), Query Frame = 1
Query:   70 AILDSDVNLFCWKRSMETTISGYLEQLLEKELSPIIFHTTIGELDKKVANERLSWDQSSLQTGTLFWQDVSRLIADFLAYSSDQSGT-VHLKVIEDNACTKFHTDGYPLRLFTTYLGKGTEWLPERAVNRSRLGKSNDQIVRDVSKIRRMDTCEVGILKGEVP 555
            AI   + NL  WKR     I  +L +   +++   I         ++   + LS  +  +    L   D+++ IA+F A  +D +    +L+ I  + C KFH D YPLRL  TY+GKGTE+L    VNR   GK+ND+IVRD  K+RR++  +V ILKGE P
Sbjct:   22 AIFTPECNLAVWKRQPNKAIEAFLMKHRHEDIH--ICKVLSARDVEQTLRQELSAFEDDIGKEALI-ADIAQ-IANFFAELTDANELHFYLETIRTDQCRKFHRDFYPLRLLCTYIGKGTEYLENDNVNRD--GKTNDEIVRDWQKVRRLNAFDVAILKGEAP 178          
BLAST of mRNA_M-pyrifera_M_contig114056.2929.1 vs. uniprot
Match: A0A3B8WDV4_9BACT (DUF1826 domain-containing protein (Fragment) n=1 Tax=Cytophagales bacterium TaxID=2053541 RepID=A0A3B8WDV4_9BACT)

HSP 1 Score: 89.0 bits (219), Expect = 1.800e-19
Identity = 44/93 (47.31%), Postives = 60/93 (64.52%), Query Frame = 1
Query:  274 DVSRLIADFLAYSSDQSGTVHLKVIEDNACTKFHTDGYPLRLFTTYLGKGTEWLPERAVNRSRL-GKSNDQIVRDVSKIRRMDTCEVGILKGE 549
            D+S +   F+  +      + LKV+ D+AC +FHTD Y LRL  TY G GTEW P+  VNR +L G +ND+I+RD S+I R+   +V ILKGE
Sbjct:    1 DLSTITRAFIQITGRSKVKLILKVVSDDACERFHTDRYDLRLLCTYYGPGTEWTPDDNVNRKKLMGGTNDEIIRDWSRINRLQQFDVAILKGE 93          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig114056.2929.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3C2A2J3_9BACT1.230e-5848.13Uncharacterized protein n=3 Tax=Cytophagales bacte... [more]
UPI00162495DE3.920e-5446.24DUF1826 domain-containing protein n=1 Tax=Fulvivir... [more]
A0A3B8ISH0_9BACT1.190e-4256.41Uncharacterized protein n=1 Tax=Cytophagales bacte... [more]
UPI000D6E97C93.000e-4139.25DUF1826 domain-containing protein n=1 Tax=Reichenb... [more]
A0A385SSQ1_9BACT4.720e-2639.88DUF1826 domain-containing protein n=2 Tax=Chryseol... [more]
A0A6N4EAA0_9RHOO1.720e-2537.35Uncharacterized protein n=1 Tax=Azospira oryzae Ta... [more]
A0A7Y4R2N5_9BACT5.060e-2534.83DUF1826 domain-containing protein n=1 Tax=Cyclobac... [more]
A0A2T4DQG3_9BACT2.130e-2433.69Uncharacterized protein n=2 Tax=Marivirga lumbrico... [more]
A0A395LZS2_9BACT6.260e-2036.81DUF1826 domain-containing protein n=1 Tax=Candidat... [more]
A0A3B8WDV4_9BACT1.800e-1947.31DUF1826 domain-containing protein (Fragment) n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig114056contigM-pyrifera_M_contig114056:4..570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score83.6
Seed ortholog evalue1.1e-13
Seed eggNOG ortholog1151127.KB906327_gene1428
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF1826)
EggNOG OGs1N204@1224,1S2Z1@1236,1YPIJ@136843,297YV@1,2ZV50@2
COG Functional cat.S
Best tax levelPseudomonas fluorescens group
Best eggNOG OGNA|NA|NA
Exons1
Model size567
Cds size567
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815655.8619888-CDS-M-pyrifera_M_contig114056:3..5701622815655.8619888-CDS-M-pyrifera_M_contig114056:3..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114056 4..570 -
1692277507.2832804-CDS-M-pyrifera_M_contig114056:3..5701692277507.2832804-CDS-M-pyrifera_M_contig114056:3..570Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig114056 4..570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig114056.2929.1prot_M-pyrifera_M_contig114056.2929.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig114056 4..570 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig114056.2929.1

>prot_M-pyrifera_M_contig114056.2929.1 ID=prot_M-pyrifera_M_contig114056.2929.1|Name=mRNA_M-pyrifera_M_contig114056.2929.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=189bp
IPLLSRKKRAPRQIIDESWSTRDAILDSDVNLFCWKRSMETTISGYLEQL
LEKELSPIIFHTTIGELDKKVANERLSWDQSSLQTGTLFWQDVSRLIADF
LAYSSDQSGTVHLKVIEDNACTKFHTDGYPLRLFTTYLGKGTEWLPERAV
NRSRLGKSNDQIVRDVSKIRRMDTCEVGILKGEVPNGSN
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mRNA from alignment at M-pyrifera_M_contig114056:4..570-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig114056.2929.1 ID=mRNA_M-pyrifera_M_contig114056.2929.1|Name=mRNA_M-pyrifera_M_contig114056.2929.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=567bp|location=Sequence derived from alignment at M-pyrifera_M_contig114056:4..570- (Macrocystis pyrifera P11B4 male)
ATACCACTCCTGAGTCGCAAGAAAAGGGCCCCAAGACAGATCATAGATGA GTCATGGAGCACACGTGATGCTATCTTGGATTCTGACGTCAACCTATTCT GTTGGAAACGATCGATGGAAACGACCATTTCTGGTTACCTCGAGCAATTG CTAGAGAAAGAGTTATCACCAATCATTTTTCATACGACCATCGGGGAGCT AGATAAGAAAGTTGCCAACGAGAGACTTTCGTGGGATCAATCATCTCTAC AAACTGGAACATTGTTCTGGCAGGATGTTTCCAGGTTGATAGCTGACTTT CTTGCTTACTCATCGGATCAATCAGGAACGGTTCACTTGAAGGTGATAGA AGATAATGCCTGCACGAAATTTCATACAGACGGATATCCACTGAGATTAT TTACAACCTACCTTGGAAAAGGTACAGAGTGGCTACCTGAACGAGCGGTG AACCGATCACGTCTAGGCAAAAGCAATGATCAGATTGTGAGAGATGTCTC TAAAATACGAAGAATGGATACTTGCGAGGTGGGGATATTAAAAGGAGAAG TACCCAATGGATCCAAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig114056:4..570-

>mRNA_M-pyrifera_M_contig114056.2929.1 ID=mRNA_M-pyrifera_M_contig114056.2929.1|Name=mRNA_M-pyrifera_M_contig114056.2929.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1134bp|location=Sequence derived from alignment at M-pyrifera_M_contig114056:4..570- (Macrocystis pyrifera P11B4 male)
ATACCACTCCTGAGTCGCAAGAAAAGGGCCCCAAGACAGATCATAGATGA
GTCATGGAGCACACGTGATGCTATCTTGGATTCTGACGTCAACCTATTCT
GTTGGAAACGATCGATGGAAACGACCATTTCTGGTTACCTCGAGCAATTG
CTAGAGAAAGAGTTATCACCAATCATTTTTCATACGACCATCGGGGAGCT
AGATAAGAAAGTTGCCAACGAGAGACTTTCGTGGGATCAATCATCTCTAC
AAACTGGAACATTGTTCTGGCAGGATGTTTCCAGGTTGATAGCTGACTTT
CTTGCTTACTCATCGGATCAATCAGGAACGGTTCACTTGAAGGTGATAGA
AGATAATGCCTGCACGAAATTTCATACAGACGGATATCCACTGAGATTAT
TTACAACCTACCTTGGAAAAGGTACAGAGTGGCTACCTGAACGAGCGGTG
AACCGATCACGTCTAGGCAAAAGCAATGATCAGATTGTGAGAGATGTCTC
TAAAATACGAAGAATGGATACTTGCGAGGTGGGGATATTAAAAGGAGAAG
TACCCAATGGATCCAATATACCACTCCTGAGTCGCAAGAAAAGGGCCCCA
AGACAGATCATAGATGAGTCATGGAGCACACGTGATGCTATCTTGGATTC
TGACGTCAACCTATTCTGTTGGAAACGATCGATGGAAACGACCATTTCTG
GTTACCTCGAGCAATTGCTAGAGAAAGAGTTATCACCAATCATTTTTCAT
ACGACCATCGGGGAGCTAGATAAGAAAGTTGCCAACGAGAGACTTTCGTG
GGATCAATCATCTCTACAAACTGGAACATTGTTCTGGCAGGATGTTTCCA
GGTTGATAGCTGACTTTCTTGCTTACTCATCGGATCAATCAGGAACGGTT
CACTTGAAGGTGATAGAAGATAATGCCTGCACGAAATTTCATACAGACGG
ATATCCACTGAGATTATTTACAACCTACCTTGGAAAAGGTACAGAGTGGC
TACCTGAACGAGCGGTGAACCGATCACGTCTAGGCAAAAGCAATGATCAG
ATTGTGAGAGATGTCTCTAAAATACGAAGAATGGATACTTGCGAGGTGGG
GATATTAAAAGGAGAAGTACCCAATGGATCCAAT
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