mRNA_M-pyrifera_M_contig101364.292.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101364.292.1
Unique NamemRNA_M-pyrifera_M_contig101364.292.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101364.292.1 vs. uniprot
Match: A0A7S0D8H3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D8H3_9EUKA)

HSP 1 Score: 58.9 bits (141), Expect = 5.900e-8
Identity = 40/98 (40.82%), Postives = 54/98 (55.10%), Query Frame = 1
Query:   19 FGRSFAECRDRFLEAARCLPRCRLYSLAPFAGAVGPDGEPLVTDVAAV-DLGSRTLSSASSPLPTDSPTTFLHTSGVHGAEGYAGSAIQCALLSRLAK 309
            F  S+   R +FL+ AR     ++ SL    G  GPDGE L  D+A + D G++           D    FLH+SGVHGAEG+AGSAIQ   L R+++
Sbjct:   18 FSSSYRAARTKFLDVAR-EAHAKIISLE-LEGVRGPDGEVLTIDIAILGDHGTK-----------DPANVFLHSSGVHGAEGFAGSAIQIDFLRRVSR 102          
BLAST of mRNA_M-pyrifera_M_contig101364.292.1 vs. uniprot
Match: UPI001E4F24AE (M14 family metallopeptidase n=1 Tax=Streptomyces sp. UNOC14_S4 TaxID=2872340 RepID=UPI001E4F24AE)

HSP 1 Score: 57.4 bits (137), Expect = 2.010e-7
Identity = 40/95 (42.11%), Postives = 45/95 (47.37%), Query Frame = 1
Query:   13 GGFGRSFAECRDRFLEAARCLPRCRLYSLAPFAGAVGPDGEPLVTDVAAVDLGSRTLSSASSPLPTDSPTTFLHTSGVHGAEGYAGSAIQCALLS 297
            G F  S+AE R  FL   R   R    S      A GP GEPL TDVA +              P  +    L  SG HG EGYAGSA+QCALL+
Sbjct:    7 GFFSESYAEARSAFL--TRATARGAALSSHRNTRATGPGGEPLYTDVARIG-------------PPGARRVVLCVSGTHGIEGYAGSALQCALLA 86          
BLAST of mRNA_M-pyrifera_M_contig101364.292.1 vs. uniprot
Match: A0A813AEC1_9DINO (Hypothetical protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813AEC1_9DINO)

HSP 1 Score: 55.8 bits (133), Expect = 6.730e-7
Identity = 40/99 (40.40%), Postives = 48/99 (48.48%), Query Frame = 1
Query:    4 RERGGFGRSFAECRDRFLEAARCLPRCRLYSL--APFAGAVGPDGEPLVTDVAAVDLGSRTLSSASSPLPTDSPTTFLHTSGVHGAEGYAGSAIQCALL 294
            R+ G F  ++   R  FL AA+ +P CR  SL         GP GE L   +A V       S      P      FLHTSG+HG EGYAGSAIQ  +L
Sbjct:   21 RDDGYFHATYHTARQDFLAAAQTVPHCRTLSLRIGEEEDLRGPFGEELCITLAIV------RSPDDEEEPAQPSAVFLHTSGLHGVEGYAGSAIQIKML 113          
BLAST of mRNA_M-pyrifera_M_contig101364.292.1 vs. uniprot
Match: UPI001EE1705C (M14 family metallopeptidase n=1 Tax=Cupriavidus pauculus TaxID=82633 RepID=UPI001EE1705C)

HSP 1 Score: 54.7 bits (130), Expect = 1.790e-6
Identity = 40/94 (42.55%), Postives = 50/94 (53.19%), Query Frame = 1
Query:   19 FGRSFAECRDRFLEAAR-CLPRCRLYSLAPFAGAVGPDGEPLVTDVAAVDLGSRTLSSASSPLPTDSPTTFLHTSGVHGAEGYAGSAIQCALLS 297
            F RS+AE R +FL+AAR C      +   P    VG DGE L  DVA   LG++           D+P   L TSG HGAEG+ GS  Q A+L+
Sbjct:   16 FARSYAEARQKFLDAARGCGAALTEF---PHPTEVGRDGETLAMDVAW--LGAQ-----------DAPRVLLVTSGTHGAEGFCGSGAQVAMLA 93          
BLAST of mRNA_M-pyrifera_M_contig101364.292.1 vs. uniprot
Match: A0A535N536_9CHLR (DUF2817 domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A535N536_9CHLR)

HSP 1 Score: 54.3 bits (129), Expect = 2.440e-6
Identity = 40/92 (43.48%), Postives = 49/92 (53.26%), Query Frame = 1
Query:   19 FGRSFAECRDRFLEAARCLPRCRLYSLAPFAGAVGPDGEPLVTDVAAVDLGSRTLSSASSPLPTDSPTTFLHTSGVHGAEGYAGSAIQCALL 294
            F  S+ E R +FL AA    R  + SL P +GA GP GEPL+TDV  V  G           PT++    + TSGVHG EG+ GSA Q   L
Sbjct:   10 FSESYTEARQKFLAAADDA-RLAVESL-PNSGAQGPGGEPLLTDV--VRAG-----------PTEAERIVVATSGVHGVEGFCGSACQIGFL 86          
BLAST of mRNA_M-pyrifera_M_contig101364.292.1 vs. uniprot
Match: UPI00126A49AA (DUF2817 domain-containing protein n=1 Tax=Sphingomonas sp. ERG5 TaxID=1381597 RepID=UPI00126A49AA)

HSP 1 Score: 53.5 bits (127), Expect = 4.550e-6
Identity = 37/94 (39.36%), Postives = 48/94 (51.06%), Query Frame = 1
Query:   19 FGRSFAECRDRFLEAARCLPRCRLYSLAPFAGAVGPDGEPLVTDVAAVDLGSRTLSSASSPLPTDSPTTFLHTSGVHGAEGYAGSAIQCALLSR 300
            F  S+AE R+RFL AA+       +   P   A GP GE L+ DVA +                +SP   + +SGVHG EGYAGSA+Q   L+R
Sbjct:   15 FSASYAEARERFLAAAQASDATIAHFQCP---ANGPSGEALMMDVAYIK--------------GESPDIVVISSGVHGVEGYAGSAVQIDTLTR 91          
BLAST of mRNA_M-pyrifera_M_contig101364.292.1 vs. uniprot
Match: A0A2E9CB62_9EURY (Uncharacterized protein n=2 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2E9CB62_9EURY)

HSP 1 Score: 53.5 bits (127), Expect = 4.570e-6
Identity = 42/99 (42.42%), Postives = 48/99 (48.48%), Query Frame = 1
Query:   19 FGRSFAECRDRFLEAARCLPRC--RLYSLAPFAGAVGPDGEPLVTDVAAVDLGSRTLSSASSPLPTDSPTTFLHTSGVHGAEGYAGSAIQCALLSRLAK 309
            F  S+AE   RFL A   L     ++ +     G  GPDGEPL  DVA V  GS             S    L TSGVHG EGY GSAIQ A++  L K
Sbjct:    7 FANSYAEAAGRFLIACDELREAGHKVENERLEIGMTGPDGEPLCIDVAIV--GSL-----------QSGKVLLSTSGVHGVEGYPGSAIQLAVMDDLCK 92          
BLAST of mRNA_M-pyrifera_M_contig101364.292.1 vs. uniprot
Match: A0A2D7AUV9_9EURY (Uncharacterized protein (Fragment) n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A2D7AUV9_9EURY)

HSP 1 Score: 51.2 bits (121), Expect = 6.090e-6
Identity = 41/97 (42.27%), Postives = 48/97 (49.48%), Query Frame = 1
Query:   19 FGRSFAECRDRFLEAARCLPRC--RLYSLAPFAGAVGPDGEPLVTDVAAVDLGSRTLSSASSPLPTDSPTTFLHTSGVHGAEGYAGSAIQCALLSRL 303
            F  S+AE   RFL A   L     R+ +     G  GP GEPL  DVA V  GS            +S    L +SGVHG EGY GSAIQ A++S L
Sbjct:    7 FANSYAEAAGRFLIACDDLRDAGHRVSNERLEIGMTGPAGEPLCIDVAVV--GSL-----------ESGKVLLSSSGVHGVEGYPGSAIQLAIMSDL 90          
BLAST of mRNA_M-pyrifera_M_contig101364.292.1 vs. uniprot
Match: A0A7S2X6X9_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2X6X9_9EUKA)

HSP 1 Score: 53.1 bits (126), Expect = 6.320e-6
Identity = 39/95 (41.05%), Postives = 52/95 (54.74%), Query Frame = 1
Query:   19 FGRSFAECRDRFLEAARCLPRCRLYSLAPFAGAVGPDGEPLVTDVAAVDLGSRTLSSASSPLPTDSPTTFLHTSGVHGAEGYAGSAIQCALLSRL 303
            F   + + + RF++ A+ +    ++SL    G  GP GE L  D+A   LG    S+  + L        LHTSGVHG EG+AGSAIQ  LLSRL
Sbjct:    5 FSIDYLQAKTRFVDLAKKI-NAHVFSLE-LKGTKGPKGEALTIDLAV--LGDVKCSTPKNIL--------LHTSGVHGVEGFAGSAIQIDLLSRL 87          
BLAST of mRNA_M-pyrifera_M_contig101364.292.1 vs. uniprot
Match: A0A2E9Y9C3_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E9Y9C3_9PROT)

HSP 1 Score: 52.8 bits (125), Expect = 8.430e-6
Identity = 37/93 (39.78%), Postives = 48/93 (51.61%), Query Frame = 1
Query:   19 FGRSFAECRDRFLEAARCLPRCRLYSLAPFAGAVGPDGEPLVTDVAAVDLGSRTLSSASSPLPTDSPTTFLHTSGVHGAEGYAGSAIQCALLS 297
            F   +A CR+ FL  +  L    + ++ P   A GPDG  L TD   + LG           PTD+    +  SG HGAEG+AGSAIQCA L+
Sbjct:    7 FRPDYAACREHFLNLSNVLGGELMRAINP---ASGPDGLELSTDF--LRLG-----------PTDAERALILVSGTHGAEGFAGSAIQCAWLA 83          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101364.292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
A0A7S0D8H3_9EUKA5.900e-840.82Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
UPI001E4F24AE2.010e-742.11M14 family metallopeptidase n=1 Tax=Streptomyces s... [more]
A0A813AEC1_9DINO6.730e-740.40Hypothetical protein (Fragment) n=1 Tax=Symbiodini... [more]
UPI001EE1705C1.790e-642.55M14 family metallopeptidase n=1 Tax=Cupriavidus pa... [more]
A0A535N536_9CHLR2.440e-643.48DUF2817 domain-containing protein n=1 Tax=Chlorofl... [more]
UPI00126A49AA4.550e-639.36DUF2817 domain-containing protein n=1 Tax=Sphingom... [more]
A0A2E9CB62_9EURY4.570e-642.42Uncharacterized protein n=2 Tax=Euryarchaeota arch... [more]
A0A2D7AUV9_9EURY6.090e-642.27Uncharacterized protein (Fragment) n=1 Tax=Euryarc... [more]
A0A7S2X6X9_9EUKA6.320e-641.05Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A2E9Y9C3_9PROT8.430e-639.78Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101364contigM-pyrifera_M_contig101364:192..563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.8
Seed ortholog evalue1.1e-07
Seed eggNOG ortholog227086.JGI_V11_92009
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF2817)
EggNOG OGs2CWSK@1,2RV57@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815511.6188276-CDS-M-pyrifera_M_contig101364:191..3581622815511.6188276-CDS-M-pyrifera_M_contig101364:191..358Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101364 192..358 +
1692277444.5182004-CDS-M-pyrifera_M_contig101364:191..3581692277444.5182004-CDS-M-pyrifera_M_contig101364:191..358Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101364 192..358 +
1622815511.6352425-CDS-M-pyrifera_M_contig101364:421..5631622815511.6352425-CDS-M-pyrifera_M_contig101364:421..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101364 422..563 +
1692277444.5300727-CDS-M-pyrifera_M_contig101364:421..5631692277444.5300727-CDS-M-pyrifera_M_contig101364:421..563Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101364 422..563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101364.292.1prot_M-pyrifera_M_contig101364.292.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101364 192..563 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101364.292.1

>prot_M-pyrifera_M_contig101364.292.1 ID=prot_M-pyrifera_M_contig101364.292.1|Name=mRNA_M-pyrifera_M_contig101364.292.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=103bp
PRERGGFGRSFAECRDRFLEAARCLPRCRLYSLAPFAGAVGPDGEPLVTD
VAAVDLGSRTLSSASSPLPTDSPTTFLHTSGVHGAEGYAGSAIQCALLSR
LAK
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mRNA from alignment at M-pyrifera_M_contig101364:192..563+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101364.292.1 ID=mRNA_M-pyrifera_M_contig101364.292.1|Name=mRNA_M-pyrifera_M_contig101364.292.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=372bp|location=Sequence derived from alignment at M-pyrifera_M_contig101364:192..563+ (Macrocystis pyrifera P11B4 male)
CCGCGGGAGCGTGGTGGGTTCGGTCGCAGTTTTGCCGAGTGTCGAGATCG GTTTTTGGAGGCAGCTCGGTGTCTTCCCCGGTGTCGTTTGTACAGTCTGG CTCCGTTCGCGGGCGCTGTGGGTCCGGACGGGGAGCCTCTGGTGACGGAC GTGGCAGCGGTGGACCTGTATGCGGGCGAGGATGAGGCGCTGTTGCGACA CAGTCCTCAATTGTTCGCAGGGTTCTCCAGAGGCTCTCGAACGCTCTCTT CCGCCTCCTCACCCCTCCCAACCGATTCACCCACCACCTTCCTCCACACC AGTGGGGTGCATGGCGCAGAAGGATACGCAGGGTCTGCAATCCAGTGTGC CCTCCTCTCTCGCCTCGCGAAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101364:192..563+

>mRNA_M-pyrifera_M_contig101364.292.1 ID=mRNA_M-pyrifera_M_contig101364.292.1|Name=mRNA_M-pyrifera_M_contig101364.292.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=618bp|location=Sequence derived from alignment at M-pyrifera_M_contig101364:192..563+ (Macrocystis pyrifera P11B4 male)
CCGCGGGAGCGTGGTGGGTTCGGTCGCAGTTTTGCCGAGTGTCGAGATCG
GTTTTTGGAGGCAGCTCGGTGTCTTCCCCGGTGTCGTTTGTACAGTCTGG
CTCCGTTCGCGGGCGCTGTGGGTCCGGACGGGGAGCCTCTGGTGACGGAC
GTGGCAGCGGTGGACCTCCGCGGGAGCGTGGTGGGTTCGGTCGCAGTTTT
GCCGAGTGTCGAGATCGGTTTTTGGAGGCAGCTCGGTGTCTTCCCCGGTG
TCGTTTGTACAGTCTGGCTCCGTTCGCGGGCGCTGTGGGTCCGGACGGGG
AGCCTCTGGTGACGGACGTGGCAGCGGTGGACCTAGGCTCTCGAACGCTC
TCTTCCGCCTCCTCACCCCTCCCAACCGATTCACCCACCACCTTCCTCCA
CACCAGTGGGGTGCATGGCGCAGAAGGATACGCAGGGTCTGCAATCCAGT
GTGCCCTCCTCTCTCGCCTCGCGAAAAGGCTCTCGAACGCTCTCTTCCGC
CTCCTCACCCCTCCCAACCGATTCACCCACCACCTTCCTCCACACCAGTG
GGGTGCATGGCGCAGAAGGATACGCAGGGTCTGCAATCCAGTGTGCCCTC
CTCTCTCGCCTCGCGAAA
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