mRNA_M-pyrifera_M_contig113570.2834.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113570.2834.1
Unique NamemRNA_M-pyrifera_M_contig113570.2834.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig113570.2834.1 vs. uniprot
Match: A0A2D5B0L4_9BACT (23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5B0L4_9BACT)

HSP 1 Score: 127 bits (320), Expect = 2.390e-32
Identity = 63/113 (55.75%), Postives = 78/113 (69.03%), Query Frame = 1 
Query:    1 YRNKMDFTFGAQKWVELAPGETLGETLGDAASSTARGTLDFALGLHAPGRHDKVLDIQHCAIAFPEASEILNVARELALEHGLAPWDLSAHTGLLRHLVVRKGFRTGEVLVYL 339
            YRNKMDFTFG ++W+E +  E +                DFALGLH PGR+DKVLD+Q C IAF EA+ ILN ARELALE GL+ WD+ AH GLLRHL++R+ F +GE+L  L
Sbjct:  178 YRNKMDFTFGNRRWIETSEPEGVAS--------------DFALGLHVPGRYDKVLDVQSCDIAFKEATPILNTARELALEAGLSGWDVHAHDGLLRHLLLRRSFASGEILAAL 276
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BLAST of mRNA_M-pyrifera_M_contig113570.2834.1 vs. uniprot
Match: A0A800KKH8_9BACT (23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD n=4 Tax=cellular organisms TaxID=131567 RepID=A0A800KKH8_9BACT)

HSP 1 Score: 127 bits (319), Expect = 2.790e-32
Identity = 65/113 (57.52%), Postives = 73/113 (64.60%), Query Frame = 1 
Query:    1 YRNKMDFTFGAQKWVELAPGETLGETLGDAASSTARGTLDFALGLHAPGRHDKVLDIQHCAIAFPEASEILNVARELALEHGLAPWDLSAHTGLLRHLVVRKGFRTGEVLVYL 339
            YRNKMDFTFG ++W+E+   E +                DFALGLH PG + KVLDIQ CAI F  A EIL  ARELA EHGL  WD   H GLLRHLV+RKG  TGE+LVYL
Sbjct:  172 YRNKMDFTFGNRRWIEVGEPEGV--------------QSDFALGLHVPGVYSKVLDIQSCAIHFEGADEILTAARELAREHGLEAWDTRRHVGLLRHLVLRKGVNTGEILVYL 270
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BLAST of mRNA_M-pyrifera_M_contig113570.2834.1 vs. uniprot
Match: A0A2D5ARJ6_9BACT (23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D5ARJ6_9BACT)

HSP 1 Score: 125 bits (314), Expect = 9.640e-32
Identity = 62/111 (55.86%), Postives = 74/111 (66.67%), Query Frame = 1 
Query:    1 YRNKMDFTFGAQKWVELAPGETLGETLGDAASSTARGTLDFALGLHAPGRHDKVLDIQHCAIAFPEASEILNVARELALEHGLAPWDLSAHTGLLRHLVVRKGFRTGEVLV 333
            YRNKMDFTFGA +WVE+   E +                DFALG+H  GR D+VLDIQ CA+ F EA  +L  ARE+A  HGL PWD+  HTGLLRHLV+RKGF TGE++V
Sbjct:  130 YRNKMDFTFGATRWVEVGEPEGV--------------ERDFALGMHVSGRFDRVLDIQSCALHFDEADGLLTSAREVARAHGLPPWDVLRHTGLLRHLVLRKGFGTGEIMV 226
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BLAST of mRNA_M-pyrifera_M_contig113570.2834.1 vs. uniprot
Match: A0A523PTR2_9BACT (23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PTR2_9BACT)

HSP 1 Score: 124 bits (311), Expect = 2.830e-31
Identity = 64/110 (58.18%), Postives = 71/110 (64.55%), Query Frame = 1 
Query:    1 YRNKMDFTFGAQKWVELAPGETLGETLGDAASSTARGTLDFALGLHAPGRHDKVLDIQHCAIAFPEASEILNVARELALEHGLAPWDLSAHTGLLRHLVVRKGFRTGEVL 330
            YRNKMDFTF  ++WVE              A        DFALGLH P R DKVLDI+ CAI F EA  +L   RELALE GL PWD  AHTGLLRHLV+RKGFRTGE++
Sbjct:  139 YRNKMDFTFSNRRWVE--------------ADEPEGARADFALGLHVPFRWDKVLDIRACAIHFREADALLASTRELALEQGLEPWDTKAHTGLLRHLVLRKGFRTGEIM 234
[Close]
BLAST of mRNA_M-pyrifera_M_contig113570.2834.1 vs. uniprot
Match: A0A518EQN2_9BACT (23S rRNA (Uracil-C(5))-methyltransferase RlmCD n=1 Tax=Planctomycetes bacterium Poly30 TaxID=2528018 RepID=A0A518EQN2_9BACT)

HSP 1 Score: 124 bits (310), Expect = 5.580e-31
Identity = 64/113 (56.64%), Postives = 80/113 (70.80%), Query Frame = 1 
Query:    1 YRNKMDFTFGAQKWVELAPGETLGETLGDAASSTARGTLDFALGLHAPGRHDKVLDIQHCAIAFPEASEILNVARELALEHGLAPWDLSAHTGLLRHLVVRKGFRTGEVLVYL 339
            YRNKMDFTFG+++++         E  G  AS        F LGLHAPG + KVLD++HCAIAF  ASEI+  ARELA+E GL+PWDL +HTGLLRHLV+R+G RTGE ++ L
Sbjct:  171 YRNKMDFTFGSKRYILEH------EPQGVDAS--------FGLGLHAPGLYQKVLDVEHCAIAFEGASEIVRAARELAIERGLSPWDLKSHTGLLRHLVLRRGERTGETMINL 269
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BLAST of mRNA_M-pyrifera_M_contig113570.2834.1 vs. uniprot
Match: A0A800MGR7_9BACT (23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD n=2 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800MGR7_9BACT)

HSP 1 Score: 122 bits (307), Expect = 1.410e-30
Identity = 61/111 (54.95%), Postives = 72/111 (64.86%), Query Frame = 1 
Query:    1 YRNKMDFTFGAQKWVELAPGETLGETLGDAASSTARGTLDFALGLHAPGRHDKVLDIQHCAIAFPEASEILNVARELALEHGLAPWDLSAHTGLLRHLVVRKGFRTGEVLV 333
            YRNKMDFTFG+++W+E    + +                DF LGLH PGR DKVLDI+ C IAFPEAS ILN AR  A +  L PWD+    GLLRHLV+RKGF TGE+LV
Sbjct:  164 YRNKMDFTFGSRRWIEEHEEQGV--------------VADFGLGLHVPGRWDKVLDIEECLIAFPEASAILNSARRYARQQNLDPWDVKESRGLLRHLVLRKGFHTGEILV 260
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BLAST of mRNA_M-pyrifera_M_contig113570.2834.1 vs. uniprot
Match: A0A2D6HDH6_9BACT (23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2D6HDH6_9BACT)

HSP 1 Score: 121 bits (303), Expect = 3.920e-30
Identity = 59/113 (52.21%), Postives = 74/113 (65.49%), Query Frame = 1 
Query:    1 YRNKMDFTFGAQKWVELAPGETLGETLGDAASSTARGTLDFALGLHAPGRHDKVLDIQHCAIAFPEASEILNVARELALEHGLAPWDLSAHTGLLRHLVVRKGFRTGEVLVYL 339
            YRNKM+FTF A++W+E    E +                DFALGLH PGRHDKV+D++ C IAF EA  I+  AR+LA E GLAPW+L  HTGLLRHLV+RK   + ++L YL
Sbjct:  139 YRNKMEFTFAARRWIEAGEPEGV--------------DADFALGLHVPGRHDKVMDVEECVIAFGEAQGIVRDARDLAREAGLAPWNLRDHTGLLRHLVLRKASHSDQILAYL 237
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BLAST of mRNA_M-pyrifera_M_contig113570.2834.1 vs. uniprot
Match: A0A7C2AL49_9BACT (23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7C2AL49_9BACT)

HSP 1 Score: 114 bits (286), Expect = 1.210e-27
Identity = 59/111 (53.15%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:    1 YRNKMDFTFGAQKWVELAPGETLGETLGDAASSTARGTLDFALGLHAPGRHDKVLDIQHCAIAFPEASEILNVARELALEHGLAPWDLSAHTGLLRHLVVRKGFRTGEVLV 333
            YRNKMDFTFG ++WVE   GE  G               DFA+GLH PGR+DK+LDI+ C IAF  A+ IL   R LA EH L  WD+  H GLLRHLV+R G R+G++LV
Sbjct:  144 YRNKMDFTFGNRRWVE--EGEPEGAE------------RDFAVGLHVPGRYDKILDIRRCEIAFEAANPILGTVRRLAREHDLDAWDVREHRGLLRHLVLRHGVRSGDILV 240
[Close]
BLAST of mRNA_M-pyrifera_M_contig113570.2834.1 vs. uniprot
Match: A0A518BQ94_9BACT (23S rRNA (Uracil-C(5))-methyltransferase RlmCD n=1 Tax=Planctomycetes bacterium Pla133 TaxID=2528011 RepID=A0A518BQ94_9BACT)

HSP 1 Score: 112 bits (280), Expect = 9.030e-27
Identity = 58/113 (51.33%), Postives = 71/113 (62.83%), Query Frame = 1 
Query:    1 YRNKMDFTFGAQKWVELAPGETLGETLGDAASSTARGTLDFALGLHAPGRHDKVLDIQHCAIAFPEASEILNVARELALEHGLAPWDLSAHTGLLRHLVVRKGFRTGEVLVYL 339
            YRNKMDFTF A++WVE    E      GD   +      DF LGLHA GRHDKVLD+  C+I F     +L   RELAL  GL PWD ++H+G LRHLV+R G  +GEV+ +L
Sbjct:  166 YRNKMDFTFSAKRWVERREPEG-----GDGRRT------DFGLGLHARGRHDKVLDVSACSIQFSGGDGLLATVRELALASGLEPWDTASHSGYLRHLVLRHGVHSGEVMAHL 267
[Close]
BLAST of mRNA_M-pyrifera_M_contig113570.2834.1 vs. uniprot
Match: A0A2E5X323_9BACT (23S rRNA (Uracil(1939)-C(5))-methyltransferase RlmD n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E5X323_9BACT)

HSP 1 Score: 107 bits (268), Expect = 3.910e-25
Identity = 58/113 (51.33%), Postives = 69/113 (61.06%), Query Frame = 1 
Query:    1 YRNKMDFTFGAQKWVELAPGETLGETLGDAASSTARGTLDFALGLHAPGRHDKVLDIQHCAIAFPEASEILNVARELALEHGLAPWDLSAHTGLLRHLVVRKGFRTGEVLVYL 339
            YRNKMDFTFG ++WVE+          G+A         DFALGLH  G + KV+DI  C I F     IL   R L LE GL PWD+  HTGLLRH+V+RKG  TGEV+V+L
Sbjct:  143 YRNKMDFTFGTRRWVEV----------GEAGDKPR----DFALGLHVGGLYRKVVDIDACPIQFTGGDGILADVRRLCLEAGLEPWDVVEHTGLLRHVVLRKGQATGEVMVFL 241
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113570.2834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2D5B0L4_9BACT2.390e-3255.7523S rRNA (Uracil(1939)-C(5))-methyltransferase Rlm... [more]
A0A800KKH8_9BACT2.790e-3257.5223S rRNA (Uracil(1939)-C(5))-methyltransferase Rlm... [more]
A0A2D5ARJ6_9BACT9.640e-3255.8623S rRNA (Uracil(1939)-C(5))-methyltransferase Rlm... [more]
A0A523PTR2_9BACT2.830e-3158.1823S rRNA (Uracil(1939)-C(5))-methyltransferase Rlm... [more]
A0A518EQN2_9BACT5.580e-3156.6423S rRNA (Uracil-C(5))-methyltransferase RlmCD n=1... [more]
A0A800MGR7_9BACT1.410e-3054.9523S rRNA (Uracil(1939)-C(5))-methyltransferase Rlm... [more]
A0A2D6HDH6_9BACT3.920e-3052.2123S rRNA (Uracil(1939)-C(5))-methyltransferase Rlm... [more]
A0A7C2AL49_9BACT1.210e-2753.1523S rRNA (Uracil(1939)-C(5))-methyltransferase Rlm... [more]
A0A518BQ94_9BACT9.030e-2751.3323S rRNA (Uracil-C(5))-methyltransferase RlmCD n=1... [more]
A0A2E5X323_9BACT3.910e-2551.3323S rRNA (Uracil(1939)-C(5))-methyltransferase Rlm... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113570contigM-pyrifera_M_contig113570:21..578 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score80.9
Seed ortholog evalue4.1e-13
Seed eggNOG ortholog517418.Ctha_1954
Preferred namerumA
KEGG koko:K03215
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
EggNOG OGs1FDAZ@1090,COG2265@1,COG2265@2
EC2.1.1.190
COG Functional cat.J
Best tax levelChlorobi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons2
Model size339
Cds size327
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113570.2834.1prot_M-pyrifera_M_contig113570.2834.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113570 33..578 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.7655241-UTR-M-pyrifera_M_contig113570:20..321622815650.7655241-UTR-M-pyrifera_M_contig113570:20..32Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113570 21..32 +
1692277505.1692848-UTR-M-pyrifera_M_contig113570:20..321692277505.1692848-UTR-M-pyrifera_M_contig113570:20..32Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113570 21..32 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.775377-CDS-M-pyrifera_M_contig113570:32..1131622815650.775377-CDS-M-pyrifera_M_contig113570:32..113Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113570 33..113 +
1692277505.1810906-CDS-M-pyrifera_M_contig113570:32..1131692277505.1810906-CDS-M-pyrifera_M_contig113570:32..113Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113570 33..113 +
1622815650.7851417-CDS-M-pyrifera_M_contig113570:332..5781622815650.7851417-CDS-M-pyrifera_M_contig113570:332..578Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113570 333..578 +
1692277505.1891181-CDS-M-pyrifera_M_contig113570:332..5781692277505.1891181-CDS-M-pyrifera_M_contig113570:332..578Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113570 333..578 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113570.2834.1

>prot_M-pyrifera_M_contig113570.2834.1 ID=prot_M-pyrifera_M_contig113570.2834.1|Name=mRNA_M-pyrifera_M_contig113570.2834.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=109bp
MDFTFGAQKWVELAPGETLGETLGDAASSTARGTLDFALGLHAPGRHDKV
LDIQHCAIAFPEASEILNVARELALEHGLAPWDLSAHTGLLRHLVVRKGF
RTGEVLVYL
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mRNA from alignment at M-pyrifera_M_contig113570:21..578+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113570.2834.1 ID=mRNA_M-pyrifera_M_contig113570.2834.1|Name=mRNA_M-pyrifera_M_contig113570.2834.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=558bp|location=Sequence derived from alignment at M-pyrifera_M_contig113570:21..578+ (Macrocystis pyrifera P11B4 male)
TACCGCAACAAGATGGACTTCACGTTCGGAGCGCAGAAGTGGGTCGAGCT
GGCGCCCGGAGAGACACTCGGCGAGACGCTCGGAGATGCGGCCGTCGTCA
GCGAGCGAGGCCGCGGTCCGGAGGACGGCGTGGTGTCTGCGAGCAGCGCC
ATGAAGTCGGCCGAGCAGTCCAAGGGCACGGGCTCCCCGAGCGACGCTGA
AGGCGCTCTTGATGTGGACGTCGCAGCGCCCGAGCTCAAGGTTGCAGGGC
GGGACGCAGCGGCCACTTCCAACCTCGAGCGCGCGGACGAAGAGCGCGCG
GACGAAGCCAAGTCTTCGACGGCTCGCGGCACATTGGACTTCGCCCTCGG
CCTGCACGCGCCCGGGCGGCACGACAAGGTGCTCGACATCCAGCACTGTG
CGATCGCCTTTCCCGAGGCCAGCGAGATCCTGAACGTGGCGCGTGAGCTC
GCGCTCGAGCATGGGCTCGCGCCGTGGGACCTGTCCGCACACACCGGGCT
CCTGCGGCACCTGGTCGTGCGCAAGGGTTTCCGCACTGGCGAGGTGCTCG
TGTACCTG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113570:21..578+

>mRNA_M-pyrifera_M_contig113570.2834.1 ID=mRNA_M-pyrifera_M_contig113570.2834.1|Name=mRNA_M-pyrifera_M_contig113570.2834.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=654bp|location=Sequence derived from alignment at M-pyrifera_M_contig113570:21..578+ (Macrocystis pyrifera P11B4 male)
ATGGACTTCACGTTCGGAGCGCAGAAGTGGGTCGAGCTGGCGCCCGGAGA
GACACTCGGCGAGACGCTCGGAGATGCGGCCATGGACTTCACGTTCGGAG
CGCAGAAGTGGGTCGAGCTGGCGCCCGGAGAGACACTCGGCGAGACGCTC
GGAGATGCGGCCTCTTCGACGGCTCGCGGCACATTGGACTTCGCCCTCGG
CCTGCACGCGCCCGGGCGGCACGACAAGGTGCTCGACATCCAGCACTGTG
CGATCGCCTTTCCCGAGGCCAGCGAGATCCTGAACGTGGCGCGTGAGCTC
GCGCTCGAGCATGGGCTCGCGCCGTGGGACCTGTCCGCACACACCGGGCT
CCTGCGGCACCTGGTCGTGCGCAAGGGTTTCCGCACTGGCGAGGTGCTCG
TGTACCTGTCTTCGACGGCTCGCGGCACATTGGACTTCGCCCTCGGCCTG
CACGCGCCCGGGCGGCACGACAAGGTGCTCGACATCCAGCACTGTGCGAT
CGCCTTTCCCGAGGCCAGCGAGATCCTGAACGTGGCGCGTGAGCTCGCGC
TCGAGCATGGGCTCGCGCCGTGGGACCTGTCCGCACACACCGGGCTCCTG
CGGCACCTGGTCGTGCGCAAGGGTTTCCGCACTGGCGAGGTGCTCGTGTA
CCTG
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