mRNA_M-pyrifera_M_contig113535.2823.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113535.2823.1
Unique NamemRNA_M-pyrifera_M_contig113535.2823.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113535.2823.1 vs. uniprot
Match: A0A849YRD6_9DELT (Sulfatase-like hydrolase/transferase n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A849YRD6_9DELT)

HSP 1 Score: 68.6 bits (166), Expect = 3.730e-11
Identity = 45/112 (40.18%), Postives = 64/112 (57.14%), Query Frame = 1
Query:    1 YDEMVRVPMVLRLPADSGLPASGVVDHPVALADVAPTLMELFDLGGRAPASSTSLAPLLAGAPGVERAHPILTRTAGPGEHVAIRFGDFKLIHETREGGPWHLFDLAADPGE 336
            YDE++RVP+++R P       + VVD PV+L D+ PT+++LF+L     A   SL PL+ G  G     PI+          A+  GD K+IH++R      +FDLAADPGE
Sbjct:  518 YDELLRVPLIIRTPTRG----AKVVDAPVSLLDLGPTILDLFNLETPPHAMGQSLVPLMRGT-GTTLTRPIVAEAR---LKRAMLIGDTKVIHDSRMRTV-EVFDLAADPGE 620          
BLAST of mRNA_M-pyrifera_M_contig113535.2823.1 vs. uniprot
Match: A0A7C2FF52_9PROT (Sulfatase domain-containing protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7C2FF52_9PROT)

HSP 1 Score: 65.5 bits (158), Expect = 1.880e-10
Identity = 52/127 (40.94%), Postives = 66/127 (51.97%), Query Frame = 1
Query:    1 YDEMVRVPMVLRLPADSGLPASGVVDHPVALADVAPTLMELFDLGGRAPASSTSLAPLLAG----APG------VERAHPILTRTAGPG-----EHVAIRFGDFKLIHETREGGPWHLFDLAADPGE 336
            Y+E VRVP+++R P    +PA  VV  P+ALAD+APT++EL         +   +APLL G    AP       + R H      AG G     E  A+R G +KLI E  E G   LFDL  DPGE
Sbjct:   70 YEEAVRVPLIVRWPGR--IPAGSVVSTPLALADLAPTVLELVGEPADGTLAPRGIAPLLLGETADAPADPEPIFLYRRHYSGEEEAGDGPYALGEKFAVREGRWKLI-EGPEEGTLELFDLERDPGE 193          
BLAST of mRNA_M-pyrifera_M_contig113535.2823.1 vs. uniprot
Match: A0A833HGB7_9BACT (Sulfatase n=1 Tax=Thermoanaerobaculia bacterium TaxID=2651171 RepID=A0A833HGB7_9BACT)

HSP 1 Score: 61.2 bits (147), Expect = 1.310e-8
Identity = 45/112 (40.18%), Postives = 64/112 (57.14%), Query Frame = 1
Query:    1 YDEMVRVPMVLRLPADSGLPASGVVDHPVALADVAPTLMELFDLGGRAPASSTSLAPLLAGAPGVERAHPILTRTAGPGEHVAIRFGDFKLIHETREGGPWHLFDLAADPGE 336
            Y+E+ RVP++LRLPA  G+PA G      ++ D+APTL++L  L   A A+  SLAP++ GA   + A  +L ++    E  A+R  D KLI           +DL ADPGE
Sbjct:  303 YEEIARVPLILRLPARWGVPA-GPRATVASVVDLAPTLLDLIGLPPLAGATGRSLAPVVRGAE--DAARQVLIQSE---EGWALRAADAKLIARPDR---IEFYDLVADPGE 405          
BLAST of mRNA_M-pyrifera_M_contig113535.2823.1 vs. uniprot
Match: A0A6L4ATS9_9BACT (Sulfatase-like hydrolase/transferase n=1 Tax=Thermoanaerobaculia bacterium TaxID=2651171 RepID=A0A6L4ATS9_9BACT)

HSP 1 Score: 60.8 bits (146), Expect = 1.800e-8
Identity = 46/114 (40.35%), Postives = 60/114 (52.63%), Query Frame = 1
Query:    1 YDEMVRVPMVLRLPADSGLPASGVVDHPVALADVAPTLMELFDLGGRAPASSTSLAPLLAGAPGVERAHPILTRTAGPGEHVAIRFGDFKLIHETREGGPW--HLFDLAADPGE 336
            YDE++RVP+++RLP   G  A G V  PV L D+APTL+EL  +         SL PL+ G    E A  + +   G     A+R G +KL         W   LFDLA+DPGE
Sbjct:  324 YDELLRVPLLIRLPG--GEAAGGEVTLPVRLLDLAPTLLELAGVEAPPEFEGRSLLPLVRGTATRELA-ALASLDDGSDASHALRLGGWKL---------WDGRLFDLASDPGE 425          
BLAST of mRNA_M-pyrifera_M_contig113535.2823.1 vs. uniprot
Match: A0A2D5ZQI1_9BACT (Uncharacterized protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2D5ZQI1_9BACT)

HSP 1 Score: 60.1 bits (144), Expect = 3.660e-8
Identity = 44/119 (36.97%), Postives = 62/119 (52.10%), Query Frame = 1
Query:    1 YDEMVRVPMVLRLPADSGLPASGVVDHPVALADVAPTLMELFDLGGRAPASST---SLAPLLAGAPGVERAHPILTRTAGPGEHV-AIRFGDFKLIHETREGGPWH---LFDLAADPGE 336
            Y+E+  VP++++      LP   VVD PV L D+ PT++   DL G  P SS    SL   + G    +   P+ + T G G  V ++R GD+KLI    +G       LFDLA+DP E
Sbjct: 1299 YEEITHVPLIIKPAKTWMLPRRRVVDTPVELVDLMPTVL---DLVGAPPVSSVQGRSLVGAMKGDAPFDPERPVFSETRGYGSTVRSVRQGDWKLILSEADGSAERAIELFDLASDPNE 1414          
BLAST of mRNA_M-pyrifera_M_contig113535.2823.1 vs. uniprot
Match: A0A534Z283_9DELT (Sulfatase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A534Z283_9DELT)

HSP 1 Score: 59.7 bits (143), Expect = 4.750e-8
Identity = 41/115 (35.65%), Postives = 59/115 (51.30%), Query Frame = 1
Query:    1 YDEMVRVPMVLRLPADSGLPASGVVDHPVALADVAPTLMELFDLGGRAPASSTSLAPLLAGAPGVERA-HPILTRTAGPG-EHVAIRFGDFKLIHETREGGPWHLFDLAADPGEE 339
            YDE++RVP++LRLP    +PA   V   V+L D+ PTL++L  +     A   SL PLL        A  P+       G E V +R+  +K +   + G     +DL ADPGE+
Sbjct:  494 YDEVLRVPLILRLPRI--VPAGLRVPVQVSLVDLMPTLLDLLHIPVPDTAQGRSLVPLLGDPRAAAFASRPVFAELKVAGLEAVGVRYAGYKWVFPRQPGAQVETYDLGADPGEQ 606          
BLAST of mRNA_M-pyrifera_M_contig113535.2823.1 vs. uniprot
Match: A0A6M1MJS5_9RHOB (Sulfatase-like hydrolase/transferase n=1 Tax=Rhodobacter sp. SGA-6-6 TaxID=2710882 RepID=A0A6M1MJS5_9RHOB)

HSP 1 Score: 58.9 bits (141), Expect = 8.440e-8
Identity = 40/111 (36.04%), Postives = 56/111 (50.45%), Query Frame = 1
Query:    1 YDEMVRVPMVLRLPADSGLPASGVVDHPVALADVAPTLMELFDLGGRAPASSTSLAPLLAGAPGVERAHPILTRTAGPGEHVAIRFGDFKLIHETREGG--PWHLFDLAAD 327
            +++ + VP V+  P     PA  VV+ PVAL D+ PTL++   L     A+  SL P++ GA   +RA P        G  V IR GD+++I      G   W LFDL  D
Sbjct:  302 WEQALHVPFVIFDPTQ---PAGRVVEDPVALVDLGPTLLDFAGLAPPPAAAGRSLRPMMQGARDPDRAIPSFY-----GHSVTIRKGDYRIIRYASAPGVEDWQLFDLRTD 404          
BLAST of mRNA_M-pyrifera_M_contig113535.2823.1 vs. uniprot
Match: A0A3M1EKM2_9CHLR (DUF4976 domain-containing protein n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A3M1EKM2_9CHLR)

HSP 1 Score: 58.5 bits (140), Expect = 1.160e-7
Identity = 45/115 (39.13%), Postives = 60/115 (52.17%), Query Frame = 1
Query:    1 YDEMVRVPMVLRLPADSGLPASGVVDHPVALADVAPTLMELFDLGGRAPAS-STSLAPLLAGAPGV-ERAHPILTRTAGPGEH-VAIRFGDFKLIHETREGGPWHLFDLAADPGE 336
            YDE+VRVP+V+R+P   GL    V+   VA  D APT+++L  +  + P     SL P L G+  V ER   I     GP  H +A+R    K IH   +     L+DL ADP E
Sbjct:  306 YDEIVRVPLVMRIP---GLEQPKVISRLVAHIDFAPTILDLVGISEKDPRMCGKSLLPFLDGSGDVPEREWVISEMVMGPKSHYLAVRTLTHKYIHWMAKPQEPELYDLTADPEE 417          
BLAST of mRNA_M-pyrifera_M_contig113535.2823.1 vs. uniprot
Match: A0A523PHV5_9BACT (Sulfatase domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A523PHV5_9BACT)

HSP 1 Score: 57.8 bits (138), Expect = 2.220e-7
Identity = 52/124 (41.94%), Postives = 64/124 (51.61%), Query Frame = 1
Query:    1 YDEMVRVPMVLRLPADSGLPASGVVDHPVALADVAPTLMELFDLGG-RAPASSTSLAPLLA--GAPGVERAHPILTRTA--------GPGE-HVAIRFGDFKLIHETREGGPWHLFDLAADPGE 336
            Y+EMVR+P+V   P +S +P   VVD PV L DV PTL++L  L   R      SL  LL   GA    R    + R+          P + H AIR G  KL+  TR GG   L+DL ADPGE
Sbjct:  403 YEEMVRIPLVFYAP-ESPIPVGQVVDAPVTLLDVMPTLIDLCALEPPRHRLRGASLVGLLESHGASVRSRPESFVPRSIFMTSRYKDDPAKLHAAIRIGRHKLV--TR-GGRAFLYDLVADPGE 522          
BLAST of mRNA_M-pyrifera_M_contig113535.2823.1 vs. uniprot
Match: A0A1R1DEM5_9BACL (Uncharacterized protein n=1 Tax=Paenibacillus sp. FSL H8-0548 TaxID=1920422 RepID=A0A1R1DEM5_9BACL)

HSP 1 Score: 56.6 bits (135), Expect = 5.500e-7
Identity = 47/122 (38.52%), Postives = 65/122 (53.28%), Query Frame = 1
Query:    1 YDEMVRVPMVLRLP----ADSGLPASGVVDHPVALADVAPTLMELFDLGGRAPAS--STSLAPLLAGAPGVERAHPILTRTAGP--GEHVA--IRFGDFKLIHETREGGPWHLFDLAADPGE 336
            YD++VRVP+++R+P    A++GL     V +     D+ PTL+EL DL  R P     +SL PLLAGA   E    I++   G   G +    IR  D+K I    +     L+DLA DPGE
Sbjct:  308 YDDVVRVPLIIRMPGSQEAEAGLHCDQFVYN---FLDLPPTLLELLDLQTRDPGDLQGSSLVPLLAGAERAEWRDAIVSTYNGQQFGLYTLRMIRTADWKYIWNLSDVD--ELYDLAGDPGE 424          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113535.2823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A849YRD6_9DELT3.730e-1140.18Sulfatase-like hydrolase/transferase n=1 Tax=Polya... [more]
A0A7C2FF52_9PROT1.880e-1040.94Sulfatase domain-containing protein n=1 Tax=Alphap... [more]
A0A833HGB7_9BACT1.310e-840.18Sulfatase n=1 Tax=Thermoanaerobaculia bacterium Ta... [more]
A0A6L4ATS9_9BACT1.800e-840.35Sulfatase-like hydrolase/transferase n=1 Tax=Therm... [more]
A0A2D5ZQI1_9BACT3.660e-836.97Uncharacterized protein n=1 Tax=Gemmatimonadetes b... [more]
A0A534Z283_9DELT4.750e-835.65Sulfatase n=1 Tax=Deltaproteobacteria bacterium Ta... [more]
A0A6M1MJS5_9RHOB8.440e-836.04Sulfatase-like hydrolase/transferase n=1 Tax=Rhodo... [more]
A0A3M1EKM2_9CHLR1.160e-739.13DUF4976 domain-containing protein n=1 Tax=Chlorofl... [more]
A0A523PHV5_9BACT2.220e-741.94Sulfatase domain-containing protein n=1 Tax=Planct... [more]
A0A1R1DEM5_9BACL5.500e-738.52Uncharacterized protein n=1 Tax=Paenibacillus sp. ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113535contigM-pyrifera_M_contig113535:238..576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.5
Seed ortholog evalue5.8e-07
Seed eggNOG ortholog1297569.MESS2_140004
Preferred namebetC
KEGG koko:K01133
Hectar predicted targeting categoryother localisation
EggNOG free text desc.choline-sulfatase
EggNOG OGs1MV0B@1224,2TRI6@28211,43JA0@69277,COG3119@1,COG3119@2
EC3.1.6.6
COG Functional cat.P
Best tax levelPhyllobacteriaceae
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons1
Model size339
Cds size330
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.2775688-CDS-M-pyrifera_M_contig113535:237..5671622815650.2775688-CDS-M-pyrifera_M_contig113535:237..567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113535 238..567 -
1692277504.949943-CDS-M-pyrifera_M_contig113535:237..5671692277504.949943-CDS-M-pyrifera_M_contig113535:237..567Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113535 238..567 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815650.2908237-UTR-M-pyrifera_M_contig113535:567..5761622815650.2908237-UTR-M-pyrifera_M_contig113535:567..576Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113535 568..576 -
1692277504.9663644-UTR-M-pyrifera_M_contig113535:567..5761692277504.9663644-UTR-M-pyrifera_M_contig113535:567..576Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig113535 568..576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113535.2823.1prot_M-pyrifera_M_contig113535.2823.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113535 238..567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113535.2823.1

>prot_M-pyrifera_M_contig113535.2823.1 ID=prot_M-pyrifera_M_contig113535.2823.1|Name=mRNA_M-pyrifera_M_contig113535.2823.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=110bp
MVRVPMVLRLPADSGLPASGVVDHPVALADVAPTLMELFDLGGRAPASST
SLAPLLAGAPGVERAHPILTRTAGPGEHVAIRFGDFKLIHETREGGPWHL
FDLAADPGEE
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mRNA from alignment at M-pyrifera_M_contig113535:238..576-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113535.2823.1 ID=mRNA_M-pyrifera_M_contig113535.2823.1|Name=mRNA_M-pyrifera_M_contig113535.2823.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=339bp|location=Sequence derived from alignment at M-pyrifera_M_contig113535:238..576- (Macrocystis pyrifera P11B4 male)
TATGACGAGATGGTGCGCGTGCCCATGGTCCTGCGGCTGCCCGCGGACTC CGGGCTGCCCGCGAGCGGCGTCGTCGACCACCCCGTCGCGCTCGCCGATG TCGCGCCGACCTTGATGGAGCTCTTCGACCTCGGCGGGCGCGCGCCGGCC AGCTCGACCAGCCTGGCGCCGCTGCTCGCGGGCGCTCCCGGCGTCGAGCG CGCGCACCCGATCCTGACGCGCACCGCCGGTCCCGGCGAGCACGTGGCGA TCCGCTTCGGCGACTTCAAGCTGATCCACGAGACCCGCGAAGGCGGGCCT TGGCACCTGTTCGACCTGGCCGCCGACCCCGGCGAGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113535:238..576-

>mRNA_M-pyrifera_M_contig113535.2823.1 ID=mRNA_M-pyrifera_M_contig113535.2823.1|Name=mRNA_M-pyrifera_M_contig113535.2823.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=660bp|location=Sequence derived from alignment at M-pyrifera_M_contig113535:238..576- (Macrocystis pyrifera P11B4 male)
ATGGTGCGCGTGCCCATGGTCCTGCGGCTGCCCGCGGACTCCGGGCTGCC
CGCGAGCGGCGTCGTCGACCACCCCGTCGCGCTCGCCGATGTCGCGCCGA
CCTTGATGGAGCTCTTCGACCTCGGCGGGCGCGCGCCGGCCAGCTCGACC
AGCCTGGCGCCGCTGCTCGCGGGCGCTCCCGGCGTCGAGCGCGCGCACCC
GATCCTGACGCGCACCGCCGGTCCCGGCGAGCACGTGGCGATCCGCTTCG
GCGACTTCAAGCTGATCCACGAGACCCGCGAAGGCGGGCCTTGGCACCTG
TTCGACCTGGCCGCCGACCCCGGCGAGGAGATGGTGCGCGTGCCCATGGT
CCTGCGGCTGCCCGCGGACTCCGGGCTGCCCGCGAGCGGCGTCGTCGACC
ACCCCGTCGCGCTCGCCGATGTCGCGCCGACCTTGATGGAGCTCTTCGAC
CTCGGCGGGCGCGCGCCGGCCAGCTCGACCAGCCTGGCGCCGCTGCTCGC
GGGCGCTCCCGGCGTCGAGCGCGCGCACCCGATCCTGACGCGCACCGCCG
GTCCCGGCGAGCACGTGGCGATCCGCTTCGGCGACTTCAAGCTGATCCAC
GAGACCCGCGAAGGCGGGCCTTGGCACCTGTTCGACCTGGCCGCCGACCC
CGGCGAGGAG
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