mRNA_M-pyrifera_M_contig113498.2814.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig113498.2814.1
Unique NamemRNA_M-pyrifera_M_contig113498.2814.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig113498.2814.1 vs. uniprot
Match: UPI000644A75F (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644A75F)

HSP 1 Score: 142 bits (358), Expect = 5.190e-40
Identity = 72/134 (53.73%), Postives = 99/134 (73.88%), Query Frame = 1
Query:    1 DFNGVIDFQEFCSLYAKIYTNPELPISMGYKGVTKTA-VLEDGSNAPKIEKVKVILNDEELAACRAKFEKFDADKSGTIDAAELKELLKETIGKKMSEMMIKRYVDMQLNLWDKDDNGQIDFDEFTLLYAKMYA 399
            +FNGVI+F+EF SLY+KI+ NPELPI MGYK   +    LE G+NAPK+   +V+L D ELA  R  F+K+DA+KSGTID  EL +LL+ TI K++ EMM+ R VD  + L DKD++G+IDF+EF +++ K+ A
Sbjct:   83 NFNGVIEFEEFASLYSKIHLNPELPIHMGYKKSPEVHHTLETGANAPKVVHQEVVLTDAELAEARVAFDKYDANKSGTIDRTELAQLLRATIAKRVGEMMMTRLVDSHMQLADKDNSGEIDFNEFIVIFKKVLA 216          
BLAST of mRNA_M-pyrifera_M_contig113498.2814.1 vs. uniprot
Match: F4Q1A1_CAVFA (Uncharacterized protein n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4Q1A1_CAVFA)

HSP 1 Score: 141 bits (356), Expect = 1.010e-39
Identity = 72/132 (54.55%), Postives = 93/132 (70.45%), Query Frame = 1
Query:    1 DFNGVIDFQEFCSLYAKIYTNPELPISMGYK-GVTKTAVLEDGSNAPKIEKVKVILNDEELAACRAKFEKFDADKSGTIDAAELKELLKETIGKKMSEMMIKRYVDMQLNLWDKDDNGQIDFDEFTLLYAKM 393
            DFNGVIDF EFCSLY+KIY NPELPISM  K G      LE G NAPK++ V V L + E+   R  F+K+D D SGTID +ELKEL+KE++ +KM ++++ R VD  + L DKD +G IDF+EF  +Y K+
Sbjct:   65 DFNGVIDFNEFCSLYSKIYLNPELPISMRAKPGAAPYKHLETGDNAPKVKHVTVELTEAEIEEARVVFQKYDKDNSGTIDRSELKELVKESLTRKMGDILVNRLVDSNMQLADKDGSGAIDFNEFIAIYGKL 196          
BLAST of mRNA_M-pyrifera_M_contig113498.2814.1 vs. uniprot
Match: D3BGZ3_POLPP (Putative importin subunit alpha A n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BGZ3_POLPP)

HSP 1 Score: 109 bits (273), Expect = 3.190e-25
Identity = 60/132 (45.45%), Postives = 79/132 (59.85%), Query Frame = 1
Query:    1 DFNGVIDFQEFCSLYAKIYTNPELPISMGYKGVTKT-AVLEDGSNAPKIEKVKVILNDEELAACRAKFEKFDADKSGTIDAAELKELLKETIGKKMSEMMIKRYVDMQLNLWDKDDNGQIDFDEFTLLYAKM 393
            +FNGVIDF EF SLY KI+ NPELPI +  K   +    LE G  APK+E   + L D E+   +A+F+K+D D SG ID  EL +LL+ETI KKM  +M+ R VD  + L           DEF ++Y K+
Sbjct:  592 NFNGVIDFDEFVSLYKKIHINPELPIHLQAKQSPEVHRTLETGDGAPKVESKVITLTDAEMVDAQAQFKKYDKDNSGKIDRQELADLLRETIAKKMGNLMMNRLVDSHMQLAXXXXXXXXXXDEFIIIYKKI 723          
BLAST of mRNA_M-pyrifera_M_contig113498.2814.1 vs. uniprot
Match: D2VRX1_NAEGR (Predicted protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VRX1_NAEGR)

HSP 1 Score: 79.7 bits (195), Expect = 1.210e-15
Identity = 51/140 (36.43%), Postives = 76/140 (54.29%), Query Frame = 1
Query:    1 DFNGVIDFQEFCSLYAKIYTNPELPISMGYKGVTKTAVLEDGSNAPKIEKV------KVILNDEELAACRAKFEKFDADKSGTIDAAELKELLKETIGK--KMSEMMIKRYVDMQLNLWDKDDNGQIDFDEFTLLYAKMY 396
            D N VIDF EF  LY  +Y +PELPISM  +   K    E  +N+P    +      K  L+++E    +  F+KFD DKSGTID +E+ +LL+    +  KMS+++  R V+M +      D+    FDEF  +Y  ++
Sbjct:   63 DKNQVIDFNEFVKLYTTLYFSPELPISMKVQYNVKKNYAEPHTNSPSGSGLESKLLQKKPLSEQERIKAKQTFDKFDLDKSGTIDRSEMAKLLESVYNENGKMSKVLFNRLVEMHMQ--KAGDDNVFSFDEFLSIYRNIF 200          
BLAST of mRNA_M-pyrifera_M_contig113498.2814.1 vs. uniprot
Match: A0A6A5BX93_NAEFO (Uncharacterized protein n=2 Tax=Naegleria TaxID=5761 RepID=A0A6A5BX93_NAEFO)

HSP 1 Score: 74.7 bits (182), Expect = 1.020e-13
Identity = 49/138 (35.51%), Postives = 74/138 (53.62%), Query Frame = 1
Query:    7 NGVIDFQEFCSLYAKIYTNPELPISMGYKGVTK------TAVLEDGSNAPKIEKVKVILNDEELAACRAKFEKFDADKSGTIDAAELKELLKETIGK--KMSEMMIKRYVDMQLNLWDKDDNGQIDFDEFTLLYAKMY 396
            N VID+ EF  LY  +Y +PELPISM  +  +       T      + AP + + K +   E+  A +  F+KFD DKSGTID  E+ +LL+    +  KMS+++  R VDM +N     +N    F+EF  +Y  ++
Sbjct:   70 NNVIDYDEFVKLYTTLYFSPELPISMRLENKSSSFRKEPTTSTPSNTVAPPLPQKKPLTEQEKRKAKQC-FDKFDLDKSGTIDRNEMSKLLESVYNENGKMSKVLFNRLVDMHMN--KAGNNNVFSFNEFLGIYRNIF 204          
BLAST of mRNA_M-pyrifera_M_contig113498.2814.1 vs. uniprot
Match: A0A7S4K864_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4K864_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 1.940e-7
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = 1
Query:  172 EELAACRAKFEKFDADKSGTIDAAE---LKELLKETIGKKMSEMMIKRYVDMQLNLWDKDDNGQIDFDEFT-LLYAKMYAAKE 408
            +++   R  F+K+D D SGTID  E   L + L+ T   KMS+ M++RY +      DKDD+G+IDFDEF   LY      ++
Sbjct:    8 QQIEIARLAFDKYDLDGSGTIDRGEILCLMQHLQRTGVLKMSDAMLRRYCNQNFKQIDKDDSGEIDFDEFLEFLYGSSVLTRD 90          
BLAST of mRNA_M-pyrifera_M_contig113498.2814.1 vs. uniprot
Match: A0A7M7HJ16_STRPU (Uncharacterized protein n=4 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7HJ16_STRPU)

HSP 1 Score: 57.4 bits (137), Expect = 6.070e-7
Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  175 ELAACRAKFEKFDADKSGTIDAAELKELLKETIGKKMSEMMIKRYVDMQLNLWDKDDNGQIDFDEFTLLYAKMY 396
            ++A  +AKFEK+D DKSG+ID  EL+ L  +         M++RYV  +    DKD +  IDFDEF  +Y +++
Sbjct:  159 QIADAKAKFEKYDLDKSGSIDKNELRNLFVDMFPN-FHRNMLERYVQDEFQAGDKDFSSVIDFDEFLAMYRRLF 231          
BLAST of mRNA_M-pyrifera_M_contig113498.2814.1 vs. uniprot
Match: A0A7S4K812_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4K812_9EUKA)

HSP 1 Score: 56.2 bits (134), Expect = 8.480e-7
Identity = 33/83 (39.76%), Postives = 48/83 (57.83%), Query Frame = 1
Query:  172 EELAACRAKFEKFDADKSGTIDAAE---LKELLKETIGKKMSEMMIKRYVDMQLNLWDKDDNGQIDFDEFT-LLYAKMYAAKE 408
            +++   R  F+K+D D SGTID  E   L + L+ T   KMS+ M++RY +      DKDD+G+IDFDEF   LY      ++
Sbjct:  111 QQIEIARLAFDKYDLDGSGTIDRGEILCLMQHLQRTGVLKMSDAMLRRYCNQNFKQIDKDDSGEIDFDEFLEFLYGSSVLTRD 193          
BLAST of mRNA_M-pyrifera_M_contig113498.2814.1 vs. uniprot
Match: UPI001BB1C460 (centrosomal protein 43-like isoform X1 n=3 Tax=Lytechinus variegatus TaxID=7654 RepID=UPI001BB1C460)

HSP 1 Score: 54.3 bits (129), Expect = 7.160e-6
Identity = 33/99 (33.33%), Postives = 54/99 (54.55%), Query Frame = 1
Query:  100 TKTAVLEDGSNAPKIEKVKVILNDEELAACRAKFEKFDADKSGTIDAAELKELLKETIGKKMSEMMIKRYVDMQLNLWDKDDNGQIDFDEFTLLYAKMY 396
            + TA+ E+    PK       L   ++A  + KFEK+D +KSG+ID  EL+ L  +         M++RYV  + +  DKD +  IDF+EF  +Y +++
Sbjct:  140 SSTAIDEEAVAIPKD------LTSAQIADAKEKFEKYDVNKSGSIDKDELRSLFVDMFPN-FHRNMLERYVQDEFHAGDKDFSSVIDFEEFLAMYRRLF 231          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig113498.2814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
UPI000644A75F5.190e-4053.73hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
F4Q1A1_CAVFA1.010e-3954.55Uncharacterized protein n=1 Tax=Cavenderia fascicu... [more]
D3BGZ3_POLPP3.190e-2545.45Putative importin subunit alpha A n=1 Tax=Polyspho... [more]
D2VRX1_NAEGR1.210e-1536.43Predicted protein n=1 Tax=Naegleria gruberi TaxID=... [more]
A0A6A5BX93_NAEFO1.020e-1335.51Uncharacterized protein n=2 Tax=Naegleria TaxID=57... [more]
A0A7S4K864_9EUKA1.940e-739.76Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
A0A7M7HJ16_STRPU6.070e-740.54Uncharacterized protein n=4 Tax=Strongylocentrotus... [more]
A0A7S4K812_9EUKA8.480e-739.76Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
UPI001BB1C4607.160e-633.33centrosomal protein 43-like isoform X1 n=3 Tax=Lyt... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig113498contigM-pyrifera_M_contig113498:5..519 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue2.5e-07
Seed eggNOG ortholog400682.PAC_15715162
KEGG koko:K02183
KEGG Pathwayko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5126@1,KOG0027@2759
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko03036,ko04131,ko04147
Exons3
Model size408
Cds size408
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig113498.2814.1prot_M-pyrifera_M_contig113498.2814.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig113498 5..519 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815649.817867-CDS-M-pyrifera_M_contig113498:4..2521622815649.817867-CDS-M-pyrifera_M_contig113498:4..252Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113498 5..252 -
1692277504.7381146-CDS-M-pyrifera_M_contig113498:4..2521692277504.7381146-CDS-M-pyrifera_M_contig113498:4..252Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113498 5..252 -
1622815649.8273659-CDS-M-pyrifera_M_contig113498:307..3981622815649.8273659-CDS-M-pyrifera_M_contig113498:307..398Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113498 308..398 -
1692277504.754671-CDS-M-pyrifera_M_contig113498:307..3981692277504.754671-CDS-M-pyrifera_M_contig113498:307..398Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113498 308..398 -
1622815649.839101-CDS-M-pyrifera_M_contig113498:450..5191622815649.839101-CDS-M-pyrifera_M_contig113498:450..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113498 451..519 -
1692277504.7660787-CDS-M-pyrifera_M_contig113498:450..5191692277504.7660787-CDS-M-pyrifera_M_contig113498:450..519Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig113498 451..519 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig113498.2814.1

>prot_M-pyrifera_M_contig113498.2814.1 ID=prot_M-pyrifera_M_contig113498.2814.1|Name=mRNA_M-pyrifera_M_contig113498.2814.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
DFNGVIDFQEFCSLYAKIYTNPELPISMGYKGVTKTAVLEDGSNAPKIEK
VKVILNDEELAACRAKFEKFDADKSGTIDAAELKELLKETIGKKMSEMMI
KRYVDMQLNLWDKDDNGQIDFDEFTLLYAKMYAAKE
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mRNA from alignment at M-pyrifera_M_contig113498:5..519-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig113498.2814.1 ID=mRNA_M-pyrifera_M_contig113498.2814.1|Name=mRNA_M-pyrifera_M_contig113498.2814.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=515bp|location=Sequence derived from alignment at M-pyrifera_M_contig113498:5..519- (Macrocystis pyrifera P11B4 male)
GATTTCAACGGTGTCATAGATTTCCAGGAGTTCTGCAGCCTCTACGCGAA GATCTACACCAACCCGGAGGTGCGTCCCCCCCTGTGCCGTTGCTGCAGCC TCGGCGCTGACCGCTCACCAGCTTCCCATCAGCATGGGCTACAAGGGAGT CACTAAGACCGCTGTGCTTGAGGACGGCAGTAACGCCCCTAAGATCGAGA AGGTGAAGGTAAGTAGAGCAGCCCATTCTCTTTGCTCCGCACGGCTAACG CGGACTGCAGGACGCAGTCCTCAACGACGAGGAGCTCGCAGCCTGCAGGG CCAAGTTCGAGAAGTTCGACGCAGACAAGTCTGGCACTATTGATGCGGCT GAGCTGAAGGAGCTGCTGAAGGAGACCATCGGCAAGAAGATGTCGGAGAT GATGATCAAGAGGTACGTTGACATGCAGCTCAACCTGTGGGACAAGGACG ACAACGGCCAGATTGACTTCGATGAGTTCACTCTGCTCTATGCCAAGATG TATGCTGCCAAGGAG
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig113498:5..519-

>mRNA_M-pyrifera_M_contig113498.2814.1 ID=mRNA_M-pyrifera_M_contig113498.2814.1|Name=mRNA_M-pyrifera_M_contig113498.2814.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig113498:5..519- (Macrocystis pyrifera P11B4 male)
GATTTCAACGGTGTCATAGATTTCCAGGAGTTCTGCAGCCTCTACGCGAA
GATCTACACCAACCCGGAGGATTTCAACGGTGTCATAGATTTCCAGGAGT
TCTGCAGCCTCTACGCGAAGATCTACACCAACCCGGAGCTTCCCATCAGC
ATGGGCTACAAGGGAGTCACTAAGACCGCTGTGCTTGAGGACGGCAGTAA
CGCCCCTAAGATCGAGAAGGTGAAGGTAACTTCCCATCAGCATGGGCTAC
AAGGGAGTCACTAAGACCGCTGTGCTTGAGGACGGCAGTAACGCCCCTAA
GATCGAGAAGGTGAAGGTAATCCTCAACGACGAGGAGCTCGCAGCCTGCA
GGGCCAAGTTCGAGAAGTTCGACGCAGACAAGTCTGGCACTATTGATGCG
GCTGAGCTGAAGGAGCTGCTGAAGGAGACCATCGGCAAGAAGATGTCGGA
GATGATGATCAAGAGGTACGTTGACATGCAGCTCAACCTGTGGGACAAGG
ACGACAACGGCCAGATTGACTTCGATGAGTTCACTCTGCTCTATGCCAAG
ATGTATGCTGCCAAGGAGTCCTCAACGACGAGGAGCTCGCAGCCTGCAGG
GCCAAGTTCGAGAAGTTCGACGCAGACAAGTCTGGCACTATTGATGCGGC
TGAGCTGAAGGAGCTGCTGAAGGAGACCATCGGCAAGAAGATGTCGGAGA
TGATGATCAAGAGGTACGTTGACATGCAGCTCAACCTGTGGGACAAGGAC
GACAACGGCCAGATTGACTTCGATGAGTTCACTCTGCTCTATGCCAAGAT
GTATGCTGCCAAGGAG
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