mRNA_M-pyrifera_M_contig101312.276.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101312.276.1
Unique NamemRNA_M-pyrifera_M_contig101312.276.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101312.276.1 vs. uniprot
Match: D3Q9A0_STANL (Acyl-CoA dehydrogenase domain protein n=1 Tax=Stackebrandtia nassauensis (strain DSM 44728 / CIP 108903 / NRRL B-16338 / NBRC 102104 / LLR-40K-21) TaxID=446470 RepID=D3Q9A0_STANL)

HSP 1 Score: 139 bits (349), Expect = 3.340e-37
Identity = 74/108 (68.52%), Postives = 89/108 (82.41%), Query Frame = 1
Query:    1 VASRANIQDWIAEARIDIDAARLLTLRTASIMDTDGDKAAAPEMSVIKVHVMRTATTVIDRAIQVFGAAGVSDDVPLARMYAQLRSLRIADGPDEVHLMAIARRELRQ 324
            +++RANIQDWIAEARI+ID ARLLTL+TA +MDT G++AAA E+S IKV   + A  VIDRAIQV G AGV+DD PLA  +A LR+LR+ADGPDEVH  AIARRELR+
Sbjct:  293 LSTRANIQDWIAEARIEIDMARLLTLKTAYLMDTMGNQAAATEISAIKVAAPQAALNVIDRAIQVHGGAGVTDDFPLAMAWAHLRALRLADGPDEVHKRAIARRELRK 400          
BLAST of mRNA_M-pyrifera_M_contig101312.276.1 vs. uniprot
Match: A0A857L457_9ACTN (Acyl-CoA dehydrogenase n=4 Tax=Gordonia TaxID=2053 RepID=A0A857L457_9ACTN)

HSP 1 Score: 138 bits (347), Expect = 6.340e-37
Identity = 73/112 (65.18%), Postives = 85/112 (75.89%), Query Frame = 1
Query:    1 VASRANIQDWIAEARIDIDAARLLTLRTASIMDTDGDKAAAPEMSVIKVHVMRTATTVIDRAIQVFGAAGVSDDVPLARMYAQLRSLRIADGPDEVHLMAIARRELRQQAAA 336
            +A RANIQDWIAEARIDI+  RLLTL+ A +MDT G+K AA E++ IKV     A  ++DRAIQVFG  GV+DDVPLA  YA LR+LR+ADGPDEVH  AIARRELR    A
Sbjct:  275 LADRANIQDWIAEARIDIEMVRLLTLKAAHMMDTVGNKQAATEIAAIKVAAPNVALKIVDRAIQVFGGMGVTDDVPLAAFYAHLRTLRLADGPDEVHKRAIARRELRPYVKA 386          
BLAST of mRNA_M-pyrifera_M_contig101312.276.1 vs. uniprot
Match: A0A6G3S843_9ACTN (Acyl-CoA dehydrogenase n=5 Tax=Streptomyces TaxID=1883 RepID=A0A6G3S843_9ACTN)

HSP 1 Score: 138 bits (347), Expect = 6.680e-37
Identity = 74/113 (65.49%), Postives = 86/113 (76.11%), Query Frame = 1
Query:    1 VASRANIQDWIAEARIDIDAARLLTLRTASIMDTDGDKAAAPEMSVIKVHVMRTATTVIDRAIQVFGAAGVSDDVPLARMYAQLRSLRIADGPDEVHLMAIARRELRQQAAAR 339
            VA RANIQDWIAE+RI+ID ARLLTL+ A +MDT G+K A  E++ IKV     A  V+DRAIQV G AGVSDD PLA MYA LR+LR+ADGPDEVH   IARRELR++   R
Sbjct:  291 VADRANIQDWIAESRIEIDMARLLTLKAAYLMDTVGNKQARTEIAAIKVAAPEVALKVVDRAIQVHGGAGVSDDFPLASMYAHLRTLRLADGPDEVHKRTIARRELRRRQTER 403          
BLAST of mRNA_M-pyrifera_M_contig101312.276.1 vs. uniprot
Match: A0A3D1L503_9MICO (Acyl-CoA dehydrogenase (Fragment) n=1 Tax=Janibacter terrae TaxID=103817 RepID=A0A3D1L503_9MICO)

HSP 1 Score: 130 bits (327), Expect = 1.190e-36
Identity = 67/110 (60.91%), Postives = 84/110 (76.36%), Query Frame = 1
Query:    1 VASRANIQDWIAEARIDIDAARLLTLRTASIMDTDGDKAAAPEMSVIKVHVMRTATTVIDRAIQVFGAAGVSDDVPLARMYAQLRSLRIADGPDEVHLMAIARRELRQQA 330
            +A+RANI DW+AE+RI+I+ ARLLTL+ A +MDT G+K A  E++ IKV     A  VIDRAIQV G  GVSDD PLA  YA +R+LR+ADGPDEVH M IARRE R+++
Sbjct:   33 IANRANIMDWVAESRIEIEMARLLTLKAAHMMDTVGNKVARTEIAAIKVAAPNVALKVIDRAIQVHGGGGVSDDFPLAMWYAHMRTLRLADGPDEVHKMTIARREYRRRS 142          
BLAST of mRNA_M-pyrifera_M_contig101312.276.1 vs. uniprot
Match: A0A7W0L109_9ACTN (Acyl-CoA dehydrogenase family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0L109_9ACTN)

HSP 1 Score: 137 bits (344), Expect = 1.810e-36
Identity = 72/108 (66.67%), Postives = 84/108 (77.78%), Query Frame = 1
Query:    1 VASRANIQDWIAEARIDIDAARLLTLRTASIMDTDGDKAAAPEMSVIKVHVMRTATTVIDRAIQVFGAAGVSDDVPLARMYAQLRSLRIADGPDEVHLMAIARRELRQ 324
            VA R+NI DWIAEARID++  RLLT +TA +MDT G+KAAA E+S IKV     A  ++DRAIQV GA GV DD PLA MYA LR+LR+ADGPDEVH M IARRELR+
Sbjct:  291 VAERSNIMDWIAEARIDLEMVRLLTFKTAWMMDTVGNKAAAVEISAIKVAAPNVALRIVDRAIQVHGAGGVCDDFPLASMYAHLRTLRLADGPDEVHKMTIARRELRK 398          
BLAST of mRNA_M-pyrifera_M_contig101312.276.1 vs. uniprot
Match: A0A6I1YRY2_9ACTN ((R)-benzylsuccinyl-CoA dehydrogenase n=2 Tax=Streptomyces sp. RB17 TaxID=2585197 RepID=A0A6I1YRY2_9ACTN)

HSP 1 Score: 137 bits (344), Expect = 1.840e-36
Identity = 75/113 (66.37%), Postives = 86/113 (76.11%), Query Frame = 1
Query:    1 VASRANIQDWIAEARIDIDAARLLTLRTASIMDTDGDKAAAPEMSVIKVHVMRTATTVIDRAIQVFGAAGVSDDVPLARMYAQLRSLRIADGPDEVHLMAIARRELRQQAAAR 339
            +A RANIQDWIAEARI+ID ARLLTL+ A +MDT G+K A  E++ IKV     A  VIDRAIQV G AGVSDD PLA MYA LR+LR+ADGPDEVH   IA RELR++ A R
Sbjct:  291 LAERANIQDWIAEARIEIDMARLLTLQAAHLMDTVGNKEARTEIAAIKVAAPDIALRVIDRAIQVHGGAGVSDDFPLASMYAHLRTLRLADGPDEVHKRTIAHRELRRREAER 403          
BLAST of mRNA_M-pyrifera_M_contig101312.276.1 vs. uniprot
Match: A0A538KX70_9ACTN (Acyl-CoA dehydrogenase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538KX70_9ACTN)

HSP 1 Score: 137 bits (344), Expect = 2.250e-36
Identity = 71/110 (64.55%), Postives = 88/110 (80.00%), Query Frame = 1
Query:    1 VASRANIQDWIAEARIDIDAARLLTLRTASIMDTDGDKAAAPEMSVIKVHVMRTATTVIDRAIQVFGAAGVSDDVPLARMYAQLRSLRIADGPDEVHLMAIARRELRQQA 330
            VA+R+N+QDWIAE+RI+I+ ARLLT++TA +MDT G+K A  E++ IKV   + A  VIDRAIQV G  GVSDD PLA MYA +R+LR+ADGPDEVH M IARRELR+ A
Sbjct:  292 VATRSNVQDWIAESRIEIEMARLLTMKTAWLMDTVGNKHARTEIAAIKVAAPQVALKVIDRAIQVHGGGGVSDDFPLASMYAHMRTLRLADGPDEVHKMTIARRELRRHA 401          
BLAST of mRNA_M-pyrifera_M_contig101312.276.1 vs. uniprot
Match: UPI0016670985 (acyl-CoA dehydrogenase family protein n=1 Tax=Gordonia jinhuaensis TaxID=1517702 RepID=UPI0016670985)

HSP 1 Score: 137 bits (344), Expect = 2.360e-36
Identity = 72/108 (66.67%), Postives = 85/108 (78.70%), Query Frame = 1
Query:    1 VASRANIQDWIAEARIDIDAARLLTLRTASIMDTDGDKAAAPEMSVIKVHVMRTATTVIDRAIQVFGAAGVSDDVPLARMYAQLRSLRIADGPDEVHLMAIARRELRQ 324
            +A RANIQDWIAEARIDI+  RLLTL+ A +MDT G+KAAA E++ IKV     A  +IDRAIQV G AGV+DD PLA  YA +R+LR+ADGPDEVH  AIARRELR+
Sbjct:  292 LAERANIQDWIAEARIDIEMVRLLTLKAAEMMDTVGNKAAATEIAAIKVAAPNVALKIIDRAIQVHGGAGVTDDFPLAMAYAHIRTLRLADGPDEVHKRAIARRELRK 399          
BLAST of mRNA_M-pyrifera_M_contig101312.276.1 vs. uniprot
Match: H6MTC1_GORPV (Putative acyl-CoA dehydrogenase n=6 Tax=Gordonia TaxID=2053 RepID=H6MTC1_GORPV)

HSP 1 Score: 136 bits (343), Expect = 3.360e-36
Identity = 74/112 (66.07%), Postives = 85/112 (75.89%), Query Frame = 1
Query:    1 VASRANIQDWIAEARIDIDAARLLTLRTASIMDTDGDKAAAPEMSVIKVHVMRTATTVIDRAIQVFGAAGVSDDVPLARMYAQLRSLRIADGPDEVHLMAIARRELRQQAAA 336
            +A RANIQDWIAEARIDI+  RLLTL+ A +MDT G+KAAA E++ IKV     A  +IDRAIQV G AGV+DD PLA  YA LR+LR+ADGPDEVH  AIARRELR    A
Sbjct:  292 LADRANIQDWIAEARIDIEMVRLLTLKAAYMMDTVGNKAAATEIAAIKVAAPNMALKIIDRAIQVHGGAGVTDDFPLAMAYAHLRTLRLADGPDEVHKRAIARRELRSYREA 403          
BLAST of mRNA_M-pyrifera_M_contig101312.276.1 vs. uniprot
Match: A0A2Z3YWZ7_9CORY ((R)-benzylsuccinyl-CoA dehydrogenase n=4 Tax=Corynebacterium TaxID=1716 RepID=A0A2Z3YWZ7_9CORY)

HSP 1 Score: 136 bits (342), Expect = 3.870e-36
Identity = 70/108 (64.81%), Postives = 88/108 (81.48%), Query Frame = 1
Query:    1 VASRANIQDWIAEARIDIDAARLLTLRTASIMDTDGDKAAAPEMSVIKVHVMRTATTVIDRAIQVFGAAGVSDDVPLARMYAQLRSLRIADGPDEVHLMAIARRELRQ 324
            ++ R NI+DWIAEARI I++ARLLT++ A +MDT G+KAA  E++ IKV   RTA  ++DRAIQVFG  GV+DD PLA+MYA LR+LR+ADGPDEVHLM IAR ELR+
Sbjct:  293 LSDRDNIRDWIAEARISIESARLLTMKAAWMMDTVGNKAARQEIAAIKVLAPRTALRIVDRAIQVFGGEGVTDDTPLAQMYAGLRTLRLADGPDEVHLMTIARTELRR 400          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101312.276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D3Q9A0_STANL3.340e-3768.52Acyl-CoA dehydrogenase domain protein n=1 Tax=Stac... [more]
A0A857L457_9ACTN6.340e-3765.18Acyl-CoA dehydrogenase n=4 Tax=Gordonia TaxID=2053... [more]
A0A6G3S843_9ACTN6.680e-3765.49Acyl-CoA dehydrogenase n=5 Tax=Streptomyces TaxID=... [more]
A0A3D1L503_9MICO1.190e-3660.91Acyl-CoA dehydrogenase (Fragment) n=1 Tax=Janibact... [more]
A0A7W0L109_9ACTN1.810e-3666.67Acyl-CoA dehydrogenase family protein n=1 Tax=Acid... [more]
A0A6I1YRY2_9ACTN1.840e-3666.37(R)-benzylsuccinyl-CoA dehydrogenase n=2 Tax=Strep... [more]
A0A538KX70_9ACTN2.250e-3664.55Acyl-CoA dehydrogenase n=1 Tax=Actinomycetia bacte... [more]
UPI00166709852.360e-3666.67acyl-CoA dehydrogenase family protein n=1 Tax=Gord... [more]
H6MTC1_GORPV3.360e-3666.07Putative acyl-CoA dehydrogenase n=6 Tax=Gordonia T... [more]
A0A2Z3YWZ7_9CORY3.870e-3664.81(R)-benzylsuccinyl-CoA dehydrogenase n=4 Tax=Coryn... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101312contigM-pyrifera_M_contig101312:322..663 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score140.2
Seed ortholog evalue6e-31
Seed eggNOG ortholog1463921.JODF01000001_gene3932
KEGG rclassRC00052,RC00068,RC00076,RC00095,RC00148,RC00246
KEGG koko:K00249
KEGG ReactionR00924,R01175,R01279,R02661,R03172,R03777,R03857,R03990,R04095,R04432,R04751,R04754
KEGG Pathwayko00071,ko00280,ko00410,ko00640,ko01100,ko01110,ko01130,ko01200,ko01212,ko03320,map00071,map00280,map00410,map00640,map01100,map01110,map01130,map01200,map01212,map03320
KEGG ModuleM00013,M00036,M00087
Hectar predicted targeting categoryother localisation
EggNOG free text desc.acyl-CoA dehydrogenase
EggNOG OGs2GKQI@201174,COG1960@1,COG1960@2
EC1.3.8.7
COG Functional cat.I
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size342
Cds size342
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815510.7541287-CDS-M-pyrifera_M_contig101312:321..6631622815510.7541287-CDS-M-pyrifera_M_contig101312:321..663Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101312 322..663 -
1692277444.2085476-CDS-M-pyrifera_M_contig101312:321..6631692277444.2085476-CDS-M-pyrifera_M_contig101312:321..663Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101312 322..663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101312.276.1prot_M-pyrifera_M_contig101312.276.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101312 322..663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101312.276.1

>prot_M-pyrifera_M_contig101312.276.1 ID=prot_M-pyrifera_M_contig101312.276.1|Name=mRNA_M-pyrifera_M_contig101312.276.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=114bp
VASRANIQDWIAEARIDIDAARLLTLRTASIMDTDGDKAAAPEMSVIKVH
VMRTATTVIDRAIQVFGAAGVSDDVPLARMYAQLRSLRIADGPDEVHLMA
IARRELRQQAAAR*
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mRNA from alignment at M-pyrifera_M_contig101312:322..663-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101312.276.1 ID=mRNA_M-pyrifera_M_contig101312.276.1|Name=mRNA_M-pyrifera_M_contig101312.276.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=342bp|location=Sequence derived from alignment at M-pyrifera_M_contig101312:322..663- (Macrocystis pyrifera P11B4 male)
GTCGCCTCGCGAGCGAACATCCAGGACTGGATCGCCGAGGCGCGGATCGA CATCGACGCCGCCCGCCTGCTGACCCTCCGTACGGCATCGATCATGGACA CCGACGGCGACAAGGCTGCGGCTCCCGAGATGTCGGTGATCAAGGTCCAT GTGATGCGGACCGCCACCACGGTCATCGATCGCGCCATCCAGGTGTTCGG GGCGGCCGGCGTCTCCGACGACGTCCCGCTGGCGCGGATGTATGCCCAGC TCCGATCGTTGCGAATCGCCGACGGTCCCGACGAGGTCCACCTGATGGCG ATCGCTCGCCGCGAGCTACGCCAACAGGCCGCAGCTCGCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101312:322..663-

>mRNA_M-pyrifera_M_contig101312.276.1 ID=mRNA_M-pyrifera_M_contig101312.276.1|Name=mRNA_M-pyrifera_M_contig101312.276.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=684bp|location=Sequence derived from alignment at M-pyrifera_M_contig101312:322..663- (Macrocystis pyrifera P11B4 male)
GTCGCCTCGCGAGCGAACATCCAGGACTGGATCGCCGAGGCGCGGATCGA
CATCGACGCCGCCCGCCTGCTGACCCTCCGTACGGCATCGATCATGGACA
CCGACGGCGACAAGGCTGCGGCTCCCGAGATGTCGGTGATCAAGGTCCAT
GTGATGCGGACCGCCACCACGGTCATCGATCGCGCCATCCAGGTGTTCGG
GGCGGCCGGCGTCTCCGACGACGTCCCGCTGGCGCGGATGTATGCCCAGC
TCCGATCGTTGCGAATCGCCGACGGTCCCGACGAGGTCCACCTGATGGCG
ATCGCTCGCCGCGAGCTACGCCAACAGGCCGCAGCTCGCTGAGTCGCCTC
GCGAGCGAACATCCAGGACTGGATCGCCGAGGCGCGGATCGACATCGACG
CCGCCCGCCTGCTGACCCTCCGTACGGCATCGATCATGGACACCGACGGC
GACAAGGCTGCGGCTCCCGAGATGTCGGTGATCAAGGTCCATGTGATGCG
GACCGCCACCACGGTCATCGATCGCGCCATCCAGGTGTTCGGGGCGGCCG
GCGTCTCCGACGACGTCCCGCTGGCGCGGATGTATGCCCAGCTCCGATCG
TTGCGAATCGCCGACGGTCCCGACGAGGTCCACCTGATGGCGATCGCTCG
CCGCGAGCTACGCCAACAGGCCGCAGCTCGCTGA
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