mRNA_M-pyrifera_M_contig101262.272.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101262.272.1
Unique NamemRNA_M-pyrifera_M_contig101262.272.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig101262.272.1 vs. uniprot
Match: A0A2E8LGP2_9ACTN (Uncharacterized protein n=6 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8LGP2_9ACTN)

HSP 1 Score: 87.0 bits (214), Expect = 2.160e-21
Identity = 43/49 (87.76%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 LADLAIQRLRESIDAGGTELPVDEKRLTRARRAVEKAVHLLEEPDSDPW 147
            LADLAI RLRESIDAGGTE PVDEKRLTRARRAVEKA+HLLEEPD   W
Sbjct:   22 LADLAIVRLRESIDAGGTEYPVDEKRLTRARRAVEKAIHLLEEPDDRAW 70
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BLAST of mRNA_M-pyrifera_M_contig101262.272.1 vs. uniprot
Match: A0A7C7SAH3_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiia TaxID=84992 RepID=A0A7C7SAH3_9ACTN)

HSP 1 Score: 85.5 bits (210), Expect = 8.130e-21
Identity = 41/49 (83.67%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    1 LADLAIQRLRESIDAGGTELPVDEKRLTRARRAVEKAVHLLEEPDSDPW 147
            +ADLAI RLRESIDAGGTELPVDE+RLTRARRAV+KAVHLL+EPD   W
Sbjct:   19 MADLAIMRLRESIDAGGTELPVDERRLTRARRAVDKAVHLLDEPDDAGW 67
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BLAST of mRNA_M-pyrifera_M_contig101262.272.1 vs. uniprot
Match: A0A3D5K1N8_9ACTN (Uncharacterized protein n=3 Tax=root TaxID=1 RepID=A0A3D5K1N8_9ACTN)

HSP 1 Score: 84.0 bits (206), Expect = 3.310e-20
Identity = 41/49 (83.67%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    1 LADLAIQRLRESIDAGGTELPVDEKRLTRARRAVEKAVHLLEEPDSDPW 147
            LADLA+ RLRESIDAGG ELPVDEKRLTRARRAVEKA HLL+EPD   W
Sbjct:   19 LADLALVRLRESIDAGGQELPVDEKRLTRARRAVEKAAHLLDEPDRSDW 67
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BLAST of mRNA_M-pyrifera_M_contig101262.272.1 vs. uniprot
Match: A0A382V1W6_9ZZZZ (Uncharacterized protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382V1W6_9ZZZZ)

HSP 1 Score: 82.8 bits (203), Expect = 6.550e-20
Identity = 40/49 (81.63%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 LADLAIQRLRESIDAGGTELPVDEKRLTRARRAVEKAVHLLEEPDSDPW 147
            LADLAI RLRESIDAGGTELP DE+R+TRARRAVEKAVHLL+EP+   W
Sbjct:    4 LADLAILRLRESIDAGGTELPFDERRITRARRAVEKAVHLLDEPEDGGW 52
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BLAST of mRNA_M-pyrifera_M_contig101262.272.1 vs. uniprot
Match: A0A7X5WSY6_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WSY6_9ACTN)

HSP 1 Score: 82.0 bits (201), Expect = 1.920e-19
Identity = 41/45 (91.11%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 LADLAIQRLRESIDAGGTELPVDEKRLTRARRAVEKAVHLLEEPD 135
            LADLA+ RLRESIDAGG+ELPVDEKRLTRARRAVEKAVHLL+EPD
Sbjct:   19 LADLALIRLRESIDAGGSELPVDEKRLTRARRAVEKAVHLLDEPD 63
[Close]
BLAST of mRNA_M-pyrifera_M_contig101262.272.1 vs. uniprot
Match: A0A2D9PUA6_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D9PUA6_9ACTN)

HSP 1 Score: 81.6 bits (200), Expect = 2.730e-19
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 1 
Query:    1 LADLAIQRLRESIDAGGTELPVDEKRLTRARRAVEKAVHLLEEPDSDPW 147
            LADLAI RLRESIDAGGTELP+DE+R+TRARRAVEKA HLL+EP+   W
Sbjct:   19 LADLAILRLRESIDAGGTELPLDERRITRARRAVEKAAHLLDEPNDGGW 67
[Close]
BLAST of mRNA_M-pyrifera_M_contig101262.272.1 vs. uniprot
Match: A0A381Q4Y9_9ZZZZ (Uncharacterized protein n=1 Tax=marine metagenome TaxID=408172 RepID=A0A381Q4Y9_9ZZZZ)

HSP 1 Score: 80.1 bits (196), Expect = 8.230e-19
Identity = 40/47 (85.11%), Postives = 43/47 (91.49%), Query Frame = 1 
Query:    1 LADLAIQRLRESIDAGGTELPVDEKRLTRARRAVEKAVHLLEEPDSD 141
            LADLAIQRLRESID GG ELPVDE+RLTRARRAVEKA +LLEEPD +
Sbjct:    8 LADLAIQRLRESIDVGGDELPVDERRLTRARRAVEKAAYLLEEPDDN 54
[Close]
BLAST of mRNA_M-pyrifera_M_contig101262.272.1 vs. uniprot
Match: A0A6B1B344_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1B344_9ACTN)

HSP 1 Score: 80.1 bits (196), Expect = 1.110e-18
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:    1 LADLAIQRLRESIDAGGTELPVDEKRLTRARRAVEKAVHLLEEPD 135
            LADLAI RLRESIDAGG ELPVDE+RLTRARRAVEKA+HLL EPD
Sbjct:   19 LADLAIVRLRESIDAGGQELPVDERRLTRARRAVEKAIHLLSEPD 63
[Close]
BLAST of mRNA_M-pyrifera_M_contig101262.272.1 vs. uniprot
Match: A0A2E0ZTA9_9ACTN (Uncharacterized protein n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0ZTA9_9ACTN)

HSP 1 Score: 80.1 bits (196), Expect = 1.200e-18
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    1 LADLAIQRLRESIDAGGTELPVDEKRLTRARRAVEKAVHLLEEPDSDPWS 150
            LADLAI RLRESIDAGG  LPVDE+RLTRARRAVEKA++LL+EPD   W+
Sbjct:   19 LADLAIIRLRESIDAGGNXLPVDERRLTRARRAVEKAINLLQEPDDSGWA 68
[Close]
BLAST of mRNA_M-pyrifera_M_contig101262.272.1 vs. uniprot
Match: A0A2E5NUW2_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E5NUW2_9ACTN)

HSP 1 Score: 79.3 bits (194), Expect = 2.130e-18
Identity = 40/45 (88.89%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:    1 LADLAIQRLRESIDAGGTELPVDEKRLTRARRAVEKAVHLLEEPD 135
            LADLA+ RLRESIDAGG ELPVDEKRLTRARRAVEKA++LLEEPD
Sbjct:   19 LADLALVRLRESIDAGGHELPVDEKRLTRARRAVEKAINLLEEPD 63
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101262.272.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2E8LGP2_9ACTN2.160e-2187.76Uncharacterized protein n=6 Tax=Acidimicrobiaceae ... [more]
A0A7C7SAH3_9ACTN8.130e-2183.67Uncharacterized protein n=2 Tax=Acidimicrobiia Tax... [more]
A0A3D5K1N8_9ACTN3.310e-2083.67Uncharacterized protein n=3 Tax=root TaxID=1 RepID... [more]
A0A382V1W6_9ZZZZ6.550e-2081.63Uncharacterized protein (Fragment) n=1 Tax=marine ... [more]
A0A7X5WSY6_9ACTN1.920e-1991.11Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A2D9PUA6_9ACTN2.730e-1979.59Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A381Q4Y9_9ZZZZ8.230e-1985.11Uncharacterized protein n=1 Tax=marine metagenome ... [more]
A0A6B1B344_9ACTN1.110e-1888.89Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]
A0A2E0ZTA9_9ACTN1.200e-1878.00Uncharacterized protein n=2 Tax=Acidimicrobiaceae ... [more]
A0A2E5NUW2_9ACTN2.130e-1888.89Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101262contigM-pyrifera_M_contig101262:507..671 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815510.54469-CDS-M-pyrifera_M_contig101262:506..6711622815510.54469-CDS-M-pyrifera_M_contig101262:506..671Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101262 507..671 -
1692277444.1438203-CDS-M-pyrifera_M_contig101262:506..6711692277444.1438203-CDS-M-pyrifera_M_contig101262:506..671Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101262 507..671 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101262.272.1prot_M-pyrifera_M_contig101262.272.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101262 507..671 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101262.272.1

>prot_M-pyrifera_M_contig101262.272.1 ID=prot_M-pyrifera_M_contig101262.272.1|Name=mRNA_M-pyrifera_M_contig101262.272.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=55bp
LADLAIQRLRESIDAGGTELPVDEKRLTRARRAVEKAVHLLEEPDSDPWS
GVGA*
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mRNA from alignment at M-pyrifera_M_contig101262:507..671-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101262.272.1 ID=mRNA_M-pyrifera_M_contig101262.272.1|Name=mRNA_M-pyrifera_M_contig101262.272.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=165bp|location=Sequence derived from alignment at M-pyrifera_M_contig101262:507..671- (Macrocystis pyrifera P11B4 male)
CTGGCCGACCTGGCCATTCAACGACTCCGCGAATCCATCGATGCGGGCGG
CACCGAGCTCCCGGTCGACGAGAAACGGCTGACCAGGGCCCGCCGGGCGG
TCGAGAAGGCCGTGCACCTCCTCGAAGAACCCGACAGCGATCCCTGGAGT
GGCGTCGGCGCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101262:507..671-

>mRNA_M-pyrifera_M_contig101262.272.1 ID=mRNA_M-pyrifera_M_contig101262.272.1|Name=mRNA_M-pyrifera_M_contig101262.272.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=330bp|location=Sequence derived from alignment at M-pyrifera_M_contig101262:507..671- (Macrocystis pyrifera P11B4 male)
CTGGCCGACCTGGCCATTCAACGACTCCGCGAATCCATCGATGCGGGCGG
CACCGAGCTCCCGGTCGACGAGAAACGGCTGACCAGGGCCCGCCGGGCGG
TCGAGAAGGCCGTGCACCTCCTCGAAGAACCCGACAGCGATCCCTGGAGT
GGCGTCGGCGCCTGACTGGCCGACCTGGCCATTCAACGACTCCGCGAATC
CATCGATGCGGGCGGCACCGAGCTCCCGGTCGACGAGAAACGGCTGACCA
GGGCCCGCCGGGCGGTCGAGAAGGCCGTGCACCTCCTCGAAGAACCCGAC
AGCGATCCCTGGAGTGGCGTCGGCGCCTGA
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