mRNA_M-pyrifera_M_contig101262.271.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101262.271.1
Unique NamemRNA_M-pyrifera_M_contig101262.271.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101262.271.1 vs. uniprot
Match: A0A7X5WSX8_9ACTN (Uncharacterized protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WSX8_9ACTN)

HSP 1 Score: 243 bits (620), Expect = 7.020e-80
Identity = 116/151 (76.82%), Postives = 132/151 (87.42%), Query Frame = 1
Query:    1 LTLIQTGKSTPAPIVLLDPPGGTYWKRWREFVEIELRDEGLIAPTDLALVRVTDSIDEAVDEICGFYRTYHSIRHVGSRLVLRLRRPIDDAELATLNERFGHILAKGEIERIEATEPEIRDDDHVGLHRIAFRFDRRSWSGVRLMIDALNE 453
            LTLIQTGKS PAP+VLLDPPGGTYW RW+EFVEIEL + GLI+  DLALV+VTDSI+EAV+E+C FYRTYHSIR VGSRLVLRLRR +DD ELA LN RF HI+ +G IERI ATE E+RDDDHV L R+AFRFDRRSW+GVR++IDALNE
Sbjct:   26 LTLIQTGKSVPAPVVLLDPPGGTYWTRWKEFVEIELLEPGLISADDLALVKVTDSIEEAVEEVCRFYRTYHSIRFVGSRLVLRLRREVDDGELAELNGRFAHIVERGTIERIPATEAEVRDDDHVDLPRLAFRFDRRSWAGVRMLIDALNE 176          
BLAST of mRNA_M-pyrifera_M_contig101262.271.1 vs. uniprot
Match: A0A3M2G1G2_ACTSX (LOG family protein (Fragment) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2G1G2_ACTSX)

HSP 1 Score: 195 bits (495), Expect = 1.700e-59
Identity = 94/151 (62.25%), Postives = 112/151 (74.17%), Query Frame = 1
Query:    1 LTLIQTGKSTPAPIVLLDPPGGTYWKRWREFVEIELRDEGLIAPTDLALVRVTDSIDEAVDEICGFYRTYHSIRHVGSRLVLRLRRPIDDAELATLNERFGHILAKGEIERIEATEPEIRDDDHVGLHRIAFRFDRRSWSGVRLMIDALNE 453
            LTL+QTGK+ PAP+VL+DPPGGTYW RW +FV  EL   GLI+P D  LV +TDS+DEAV  +CGFYR YHS+R VGSRLV+RLRR + D  LA L+  F  I  KG IERI+ TE E RDDD V L RIA RFDR  W+ +R +IDA+NE
Sbjct:  129 LTLMQTGKTPPAPVVLIDPPGGTYWHRWLDFVRTELEGHGLISPDDTGLVTLTDSVDEAVAVVCGFYRIYHSMRFVGSRLVIRLRRALSDEHLARLDRDFRDICEKGGIERIDTTEAERRDDDEVHLPRIALRFDRHHWARLRRLIDAINE 279          
BLAST of mRNA_M-pyrifera_M_contig101262.271.1 vs. uniprot
Match: A0A2E8LE51_9ACTN (TIGR00730 family Rossman fold protein (Fragment) n=7 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8LE51_9ACTN)

HSP 1 Score: 193 bits (491), Expect = 8.620e-58
Identity = 88/154 (57.14%), Postives = 112/154 (72.73%), Query Frame = 1
Query:    1 LTLIQTGKSTPAPIVLLDPPGGTYWKRWREFVEIELRDEGLIAPTDLALVRVTDSIDEAVDEICGFYRTYHSIRHVGSRLVLRLRRPIDDAELATLNERFGHILAKGEIERIEATEPEIRDDDHVGLHRIAFRFDRRSWSGVRLMIDALNENTP 462
            LTLIQTGK+ PAP+VLLD PGGTYW  W +FV  EL + GLI+P D+ L RV  +++EAVDE+C FYRTYHS+R VG  L+ RL RP++D ELA L+E F  ++ +G I  I+AT+ E+ D DHV L RI F FD+  WS +R +ID LN NTP
Sbjct:  218 LTLIQTGKTAPAPVVLLDEPGGTYWDHWYDFVTTELGNAGLISPDDMCLARVAHTVEEAVDEVCDFYRTYHSMRFVGDHLIFRLNRPVEDGELAALSEEFAPMIVQGGITAIDATKSEVHDGDHVDLPRIMFEFDKHQWSMLRRLIDRLNANTP 371          
BLAST of mRNA_M-pyrifera_M_contig101262.271.1 vs. uniprot
Match: A0A7C4TH58_9ACTN (LOG family protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7C4TH58_9ACTN)

HSP 1 Score: 186 bits (471), Expect = 1.770e-55
Identity = 94/161 (58.39%), Postives = 110/161 (68.32%), Query Frame = 1
Query:    1 LTLIQTGKSTPAPIVLLDPPGGTYWKRWREFVEIELRDEGLIAPTDLALVRVTDSIDEAVDEICGFYRTYHSIRHVGSRLVLRLRRPIDDAELATLNERFGHILAKGEIERIEATEPEIRDDDHVGLHRIAFRFDRRSWSGVRLMIDALNEN-TPDDLPPT 480
            LTL+QTGK+ P+PIVLLD PGGTYWK WR FVE EL   G +   DL LVRVTD + EAVDE+ GFY  YHS R VG RLVLRLRR  DD  L  L E+F  I+ +G IER++A   E+ DDDH  L R+A  FDRR W  +R +IDALN   T DD  P+
Sbjct:  130 LTLVQTGKAQPSPIVLLDVPGGTYWKTWRSFVEDELEQRGYVGEHDLCLVRVTDDVTEAVDELRGFYSNYHSQRFVGGRLVLRLRRAPDDETLEQLTEQFADIITRGSIERVQAAPVELADDDHPELDRVALWFDRRGWPRLRELIDALNGRPTNDDRRPS 290          
BLAST of mRNA_M-pyrifera_M_contig101262.271.1 vs. uniprot
Match: A0A520XQS2_9ACTN (LOG family protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520XQS2_9ACTN)

HSP 1 Score: 181 bits (460), Expect = 1.920e-53
Identity = 88/150 (58.67%), Postives = 114/150 (76.00%), Query Frame = 1
Query:    1 LTLIQTGKSTPAPIVLLDPPGGTYWKRWREFVEIELRDEGLIAPTDLALVRVTDSIDEAVDEICGFYRTYHSIRHVGSRLVLRLRRPIDDAELATLNERFGHILAKGEIERIEATEPEIRDDDHVGLHRIAFRFDRRSWSGVRLMIDALN 450
            LTL+QTGK+  AP+VLLDPPG TYW+RWR FV  EL  +GLI+  D+ LV +T+S+++A +E+  FYRTYHS R VG RLV+R +R I D EL  LN  F  I+ +G IERI AT+ EIRDDD++ LHRIAFRF+R  ++ +RL+IDALN
Sbjct:  194 LTLMQTGKTFLAPVVLLDPPGSTYWERWRAFVVDELLSDGLISEADMGLVFITNSVEDAANEVNRFYRTYHSSRAVGHRLVIRTKREIRDDELGALNRDFDDIIEEGAIERISATDSEIRDDDNLDLHRIAFRFNRHGYARLRLLIDALN 343          
BLAST of mRNA_M-pyrifera_M_contig101262.271.1 vs. uniprot
Match: A0A2E0ZTA4_9ACTN (Cytochrome D ubiquinol oxidase subunit II n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0ZTA4_9ACTN)

HSP 1 Score: 178 bits (452), Expect = 3.120e-52
Identity = 86/155 (55.48%), Postives = 108/155 (69.68%), Query Frame = 1
Query:    1 LTLIQTGKSTPAPIVLLDPPGGTYWKRWREFVEIELRDEGLIAPTDLALVRVTDSIDEAVDEICGFYRTYHSIRHVGSRLVLRLRRPIDDAELATLNERFGHILAKGEIERIEATEPEIRDDDHVGLHRIAFRFDRRSWSGVRLMIDALNENTPD 465
            LTL+QTGK+  AP+VLLDPPG TYW  W EF + EL    L++P DL+L+  TD    A + +  FYRTYHS+R+VG  LVLRL R +DDAE+ATL+E FG +L  G IER E T  E+RDDD V   R+   FDRRS + +R +IDALN+ TPD
Sbjct:  192 LTLMQTGKTHLAPVVLLDPPGDTYWSHWTEFXQAELVARNLVSPHDLSLIHATDDPRAAAEHVRDFYRTYHSMRYVGRHLVLRLEREVDDAEVATLDEEFGDLLVDGHIERCETTSHELRDDDEVARPRLRLHFDRRSHARLRQLIDALNDATPD 346          
BLAST of mRNA_M-pyrifera_M_contig101262.271.1 vs. uniprot
Match: A0A7Y2DEC2_9ACTN (TIGR00730 family Rossman fold protein n=1 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A7Y2DEC2_9ACTN)

HSP 1 Score: 176 bits (447), Expect = 1.840e-51
Identity = 90/151 (59.60%), Postives = 106/151 (70.20%), Query Frame = 1
Query:    1 LTLIQTGKSTPAPIVLLDPPGGTYWKRWREFVEIELRDEGLIAPTDLALVRVTDSIDEAVDEICGFYRTYHSIRHVGSRLVLRLRRPIDDAELATLNERFGHILAKGEIERIEATEPEIRDDDHVGLHRIAFRFDRRSWSGVRLMIDALNE 453
            LTL+QTGK+  AP+VLLDPPG TYW  WR+FV  EL + G I  TDL LV +TD I EAV+EIC FY +YHS+R VG RLVLRL R   DAELA L + F  I   G +ER+ A++ EI DDDHV L RIAF FDR     +RLMID LN+
Sbjct:  195 LTLMQTGKTYLAPVVLLDPPGDTYWDTWRDFVVKELLEPGYINGTDLKLVHITDDIPEAVNEICHFYSSYHSMRFVGKRLVLRLNREPSDAELAQLTKEFAPITVSGGVERVTASQSEIDDDDHVDLPRIAFHFDRHGNDKLRLMIDHLND 345          
BLAST of mRNA_M-pyrifera_M_contig101262.271.1 vs. uniprot
Match: A0A2E8LGZ5_9ACTN (Cytochrome D ubiquinol oxidase subunit II n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8LGZ5_9ACTN)

HSP 1 Score: 175 bits (444), Expect = 4.810e-51
Identity = 85/154 (55.19%), Postives = 104/154 (67.53%), Query Frame = 1
Query:    1 LTLIQTGKSTPAPIVLLDPPGGTYWKRWREFVEIELRDEGLIAPTDLALVRVTDSIDEAVDEICGFYRTYHSIRHVGSRLVLRLRRPIDDAELATLNERFGHILAKGEIERIEATEPEIRDDDHVGLHRIAFRFDRRSWSGVRLMIDALNENTP 462
            LTL+QTGK+  +P+VLLDPPG TYW  W EFV  EL D  L++  DLALV  TD    A D +CGFYR +HS+R+VG  LVLRL RP+ + ELA LN  FG +L  G IE IEAT  E+ DDD +   R+   FDRRS + +R +IDALN  TP
Sbjct:  192 LTLMQTGKTHLSPVVLLDPPGSTYWSHWTEFVRCELVDRNLVSDHDLALVHATDDPVAAADHVCGFYRAFHSMRYVGGHLVLRLERPVGEDELAGLNTAFGDLLVDGSIEAIEATPAEVADDDEIHRPRLRLHFDRRSHARLRQLIDALNAGTP 345          
BLAST of mRNA_M-pyrifera_M_contig101262.271.1 vs. uniprot
Match: A0A7V9BXR9_9ACTN (TIGR00730 family Rossman fold protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V9BXR9_9ACTN)

HSP 1 Score: 174 bits (441), Expect = 6.410e-51
Identity = 87/155 (56.13%), Postives = 107/155 (69.03%), Query Frame = 1
Query:    1 LTLIQTGKSTPAPIVLLDPPGGTYWKRWREFVEIELRDEGLIAPTDLALVRVTDSIDEAVDEICGFYRTYHSIRHVGSRLVLRLRRPIDDAELATLNERFGHILAKGE-IERIEATEPEIRDDDHVGLHRIAFRFDRRSWSGVRLMIDALNENTP 462
            LTL+QTGK+ PAPIVLLD PGGTYW+ WR FVE EL   G +   DL  V VTD +D AVDE+ GFY  YHS R VG +LV+RL    + AELA L+E F  I+ +G+ I+RIEAT  E+ D+DHV L RI  RFDRR+ + +R +ID LN   P
Sbjct:  157 LTLVQTGKTQPAPIVLLDVPGGTYWESWRSFVESELTGRGYVGKDDLDFVLVTDDVDTAVDEVTGFYANYHSQRFVGGKLVIRLHHAPEPAELAALSEEFADIVVRGDGIQRIEATPTEVADNDHVDLERIVLRFDRRNHARLRALIDRLNGFAP 311          
BLAST of mRNA_M-pyrifera_M_contig101262.271.1 vs. uniprot
Match: A0A800IBB9_9ACTN (LOG family protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A800IBB9_9ACTN)

HSP 1 Score: 173 bits (439), Expect = 2.630e-50
Identity = 82/151 (54.30%), Postives = 108/151 (71.52%), Query Frame = 1
Query:    1 LTLIQTGKSTPAPIVLLDPPGGTYWKRWREFVEIELRDEGLIAPTDLALVRVTDSIDEAVDEICGFYRTYHSIRHVGSRLVLRLRRPIDDAELATLNERFGHILAKGEIERIEATEPEIRDDDHVGLHRIAFRFDRRSWSGVRLMIDALNE 453
            LTL+QTGKS  +P+VLLDPPG TYW+RW +F+  EL +  LI+  DLA + VT+   +A + +C FY T+HS R VG RLVLRL R ++DAEL+ LN  FG +L  G IERIE T  E++D+D V LHR+A R+ R   + +RLMIDALN+
Sbjct:  191 LTLMQTGKSPISPVVLLDPPGSTYWERWVDFIRAELLEGQLISENDLAFISVTNDPAQAANHLCHFYSTFHSTRFVGGRLVLRLNRMVEDAELSALNTEFGDLLESGSIERIEVTSAELKDNDQVSLHRLALRYHRAGQARLRLMIDALND 341          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101262.271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X5WSX8_9ACTN7.020e-8076.82Uncharacterized protein n=1 Tax=Actinomycetia bact... [more]
A0A3M2G1G2_ACTSX1.700e-5962.25LOG family protein (Fragment) n=1 Tax=Actinomyces ... [more]
A0A2E8LE51_9ACTN8.620e-5857.14TIGR00730 family Rossman fold protein (Fragment) n... [more]
A0A7C4TH58_9ACTN1.770e-5558.39LOG family protein n=1 Tax=Actinomycetia bacterium... [more]
A0A520XQS2_9ACTN1.920e-5358.67LOG family protein n=1 Tax=Acidimicrobiales bacter... [more]
A0A2E0ZTA4_9ACTN3.120e-5255.48Cytochrome D ubiquinol oxidase subunit II n=2 Tax=... [more]
A0A7Y2DEC2_9ACTN1.840e-5159.60TIGR00730 family Rossman fold protein n=1 Tax=Acid... [more]
A0A2E8LGZ5_9ACTN4.810e-5155.19Cytochrome D ubiquinol oxidase subunit II n=1 Tax=... [more]
A0A7V9BXR9_9ACTN6.410e-5156.13TIGR00730 family Rossman fold protein n=1 Tax=Acti... [more]
A0A800IBB9_9ACTN2.630e-5054.30LOG family protein n=1 Tax=Acidimicrobiia bacteriu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101262contigM-pyrifera_M_contig101262:2..493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score149.8
Seed ortholog evalue1.1e-33
Seed eggNOG ortholog1229780.BN381_10337
Preferred namefas6
KEGG rclassRC00063,RC00318
KEGG koko:K06966
KEGG ReactionR00182,R00510
KEGG Pathwayko00230,ko00240,map00230,map00240
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Possible lysine decarboxylase
EggNOG OGs2GKJH@201174,3UXFN@52018,COG1611@1,COG1611@2
EC3.2.2.10
COG Functional cat.S
Best tax levelunclassified Actinobacteria (class)
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size492
Cds size492
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815510.5065305-CDS-M-pyrifera_M_contig101262:1..4931622815510.5065305-CDS-M-pyrifera_M_contig101262:1..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101262 2..493 +
1692277444.130537-CDS-M-pyrifera_M_contig101262:1..4931692277444.130537-CDS-M-pyrifera_M_contig101262:1..493Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101262 2..493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101262.271.1prot_M-pyrifera_M_contig101262.271.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101262 2..493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101262.271.1

>prot_M-pyrifera_M_contig101262.271.1 ID=prot_M-pyrifera_M_contig101262.271.1|Name=mRNA_M-pyrifera_M_contig101262.271.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=164bp
LTLIQTGKSTPAPIVLLDPPGGTYWKRWREFVEIELRDEGLIAPTDLALV
RVTDSIDEAVDEICGFYRTYHSIRHVGSRLVLRLRRPIDDAELATLNERF
GHILAKGEIERIEATEPEIRDDDHVGLHRIAFRFDRRSWSGVRLMIDALN
ENTPDDLPPTATI*
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mRNA from alignment at M-pyrifera_M_contig101262:2..493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101262.271.1 ID=mRNA_M-pyrifera_M_contig101262.271.1|Name=mRNA_M-pyrifera_M_contig101262.271.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=492bp|location=Sequence derived from alignment at M-pyrifera_M_contig101262:2..493+ (Macrocystis pyrifera P11B4 male)
CTCACCCTGATTCAGACCGGCAAGTCCACGCCGGCGCCGATCGTCCTTCT CGACCCACCCGGCGGCACCTACTGGAAGCGTTGGCGCGAGTTCGTCGAGA TCGAACTGCGCGACGAAGGGCTGATCGCTCCCACCGACCTCGCCTTGGTG CGGGTGACCGACTCGATCGACGAGGCGGTCGACGAGATCTGCGGGTTCTA CCGGACCTACCACTCGATCCGCCATGTCGGATCGCGCCTGGTGCTGCGAC TGCGCCGCCCGATCGACGACGCCGAGCTCGCCACGCTGAACGAACGCTTC GGCCATATTCTGGCCAAGGGAGAGATCGAGCGGATCGAGGCCACCGAGCC CGAGATCCGAGACGACGACCATGTCGGACTCCACCGCATCGCGTTCCGCT TCGACCGACGCAGCTGGTCCGGCGTGCGTCTGATGATCGACGCCCTCAAC GAGAACACCCCCGACGACCTTCCCCCGACGGCGACCATCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101262:2..493+

>mRNA_M-pyrifera_M_contig101262.271.1 ID=mRNA_M-pyrifera_M_contig101262.271.1|Name=mRNA_M-pyrifera_M_contig101262.271.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=984bp|location=Sequence derived from alignment at M-pyrifera_M_contig101262:2..493+ (Macrocystis pyrifera P11B4 male)
CTCACCCTGATTCAGACCGGCAAGTCCACGCCGGCGCCGATCGTCCTTCT
CGACCCACCCGGCGGCACCTACTGGAAGCGTTGGCGCGAGTTCGTCGAGA
TCGAACTGCGCGACGAAGGGCTGATCGCTCCCACCGACCTCGCCTTGGTG
CGGGTGACCGACTCGATCGACGAGGCGGTCGACGAGATCTGCGGGTTCTA
CCGGACCTACCACTCGATCCGCCATGTCGGATCGCGCCTGGTGCTGCGAC
TGCGCCGCCCGATCGACGACGCCGAGCTCGCCACGCTGAACGAACGCTTC
GGCCATATTCTGGCCAAGGGAGAGATCGAGCGGATCGAGGCCACCGAGCC
CGAGATCCGAGACGACGACCATGTCGGACTCCACCGCATCGCGTTCCGCT
TCGACCGACGCAGCTGGTCCGGCGTGCGTCTGATGATCGACGCCCTCAAC
GAGAACACCCCCGACGACCTTCCCCCGACGGCGACCATCTGACTCACCCT
GATTCAGACCGGCAAGTCCACGCCGGCGCCGATCGTCCTTCTCGACCCAC
CCGGCGGCACCTACTGGAAGCGTTGGCGCGAGTTCGTCGAGATCGAACTG
CGCGACGAAGGGCTGATCGCTCCCACCGACCTCGCCTTGGTGCGGGTGAC
CGACTCGATCGACGAGGCGGTCGACGAGATCTGCGGGTTCTACCGGACCT
ACCACTCGATCCGCCATGTCGGATCGCGCCTGGTGCTGCGACTGCGCCGC
CCGATCGACGACGCCGAGCTCGCCACGCTGAACGAACGCTTCGGCCATAT
TCTGGCCAAGGGAGAGATCGAGCGGATCGAGGCCACCGAGCCCGAGATCC
GAGACGACGACCATGTCGGACTCCACCGCATCGCGTTCCGCTTCGACCGA
CGCAGCTGGTCCGGCGTGCGTCTGATGATCGACGCCCTCAACGAGAACAC
CCCCGACGACCTTCCCCCGACGGCGACCATCTGA
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