mRNA_M-pyrifera_M_contig112788.2665.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig112788.2665.1
Unique NamemRNA_M-pyrifera_M_contig112788.2665.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig112788.2665.1 vs. uniprot
Match: A0A7X5WN89_9ACTN (Coproporphyrinogen III oxidase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X5WN89_9ACTN)

HSP 1 Score: 112 bits (279), Expect = 2.300e-27
Identity = 54/76 (71.05%), Postives = 59/76 (77.63%), Query Frame = 1
Query:    4 LRTELETTIGLSGDAAHRVSEWRRCLPQYRPGHLDRCDQIDEWLARDAPGVVVAGASMRGLGLPACVRQGRAAVAD 231
            LR EL  TIG+ G+   RV+ WRR LPQYRPGHLDRCD+ID  LA  APG+V  GA MRGLGLPACVRQGRAAVA 
Sbjct:  378 LRRELAATIGMRGEPVVRVTPWRRSLPQYRPGHLDRCDRIDAELAASAPGLVATGAQMRGLGLPACVRQGRAAVAS 453          
BLAST of mRNA_M-pyrifera_M_contig112788.2665.1 vs. uniprot
Match: A0A7K1Z8M4_9ACTN (Coproporphyrinogen III oxidase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A7K1Z8M4_9ACTN)

HSP 1 Score: 109 bits (273), Expect = 1.510e-26
Identity = 51/71 (71.83%), Postives = 57/71 (80.28%), Query Frame = 1
Query:    4 LRTELETTIGLSGDAAHRVSEWRRCLPQYRPGHLDRCDQIDEWLARDAPGVVVAGASMRGLGLPACVRQGR 216
            LR EL  TIGL G+   RV+ W + LPQYRPGHL+RCDQID +L R+APGV VAGASMRGLGLPACVRQ R
Sbjct:  374 LRQELALTIGLQGECVARVTPWHQSLPQYRPGHLERCDQIDSYLEREAPGVTVAGASMRGLGLPACVRQAR 444          
BLAST of mRNA_M-pyrifera_M_contig112788.2665.1 vs. uniprot
Match: A0A2E8L966_9ACTN (Amino_oxidase domain-containing protein (Fragment) n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E8L966_9ACTN)

HSP 1 Score: 97.1 bits (240), Expect = 8.820e-24
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 1
Query:    1 RLRTELETTIGLSGDAAHRVSEWRRCLPQYRPGHLDRCDQIDEWLARDAPGVVVAGASMRGLGLPACVRQGRAAVA 228
            +L  EL  T+GL  +   R++ WR+ LPQYRPGH+ RCD+ID  LA  A G++VAGA MRGLGLPACVRQGRA+ A
Sbjct:   85 QLGAELALTVGLHTEPVTRITPWRQSLPQYRPGHMARCDEIDTELALVAEGLIVAGAQMRGLGLPACVRQGRASAA 160          
BLAST of mRNA_M-pyrifera_M_contig112788.2665.1 vs. uniprot
Match: A0A2E0SYI9_9ACTN (Coproporphyrinogen III oxidase n=7 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2E0SYI9_9ACTN)

HSP 1 Score: 100 bits (249), Expect = 3.950e-23
Identity = 49/78 (62.82%), Postives = 59/78 (75.64%), Query Frame = 1
Query:    1 RLRTELETTIGLSGDAAHRVSEWRRCLPQYRPGHLDRCDQIDEWLARDAPGVVVAGASMRGLGLPACVRQGRAAVADS 234
            +L  ELE T+GL  +   R++ WR+ LPQYRPGH+ RC +ID  LA  A G+VVAGA MRGLGLPACVRQGRAAVA +
Sbjct:  377 QLGAELEQTVGLHAEPVTRITPWRQSLPQYRPGHMARCAEIDTELALVAEGLVVAGAQMRGLGLPACVRQGRAAVAGT 454          
BLAST of mRNA_M-pyrifera_M_contig112788.2665.1 vs. uniprot
Match: A0A3M2G2H5_ACTSX (Protoporphyrinogen oxidase (Fragment) n=1 Tax=Actinomyces sp. TaxID=29317 RepID=A0A3M2G2H5_ACTSX)

HSP 1 Score: 87.0 bits (214), Expect = 1.640e-20
Identity = 44/76 (57.89%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    1 RLRTELETTIGLSGD-AAHRVSEWRRCLPQYRPGHLDRCDQIDEWLARDAPGVVVAGASMRGLGLPACVRQGRAAV 225
            RL  E + T+G++G   A RV+ W   LPQYRPGHL+R  +IDE LA + PG VVAGA+  GLGLPACV QGR A 
Sbjct:   24 RLLAEADATLGVTGPPVAVRVTPWLAALPQYRPGHLERAREIDELLAAEHPGAVVAGAACHGLGLPACVAQGRRAA 99          
BLAST of mRNA_M-pyrifera_M_contig112788.2665.1 vs. uniprot
Match: A0A5Q2RQG3_9ACTN (Coproporphyrinogen III oxidase n=1 Tax=Actinomarinicola tropica TaxID=2789776 RepID=A0A5Q2RQG3_9ACTN)

HSP 1 Score: 84.7 bits (208), Expect = 1.990e-17
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 1
Query:   13 ELETTIGLSGDAAH-RVSEWRRCLPQYRPGHLDRCDQIDEWLARDAPGVVVAGASMRGLGLPACVRQGRAAVAD 231
            +L TT+ L+G+ +  RV+ W R  PQY PGHL+R D ID  LAR+APG+ +AGA+ RG+G+PAC+  G  A A+
Sbjct:  392 DLRTTMDLAGEPSEVRVTRWPRAFPQYTPGHLERVDAIDATLAREAPGIALAGAAYRGVGIPACINSGHQAAAE 465          
BLAST of mRNA_M-pyrifera_M_contig112788.2665.1 vs. uniprot
Match: A0A6N7FUS3_9ACTN (Coproporphyrinogen III oxidase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FUS3_9ACTN)

HSP 1 Score: 83.2 bits (204), Expect = 7.100e-17
Identity = 41/75 (54.67%), Postives = 51/75 (68.00%), Query Frame = 1
Query:    4 LRTELETTIGLSGDAAH-RVSEWRRCLPQYRPGHLDRCDQIDEWLARDAPGVVVAGASMRGLGLPACVRQGRAAV 225
            LR +L TT+G+  + A  RV+ W   LPQYRPGHLDR   ++  LA  APGVV  GA+ RG+GLPAC+ QGR A 
Sbjct:  391 LRADLRTTMGIDAEPAQVRVTPWPASLPQYRPGHLDRLASLEASLAGAAPGVVATGAAFRGVGLPACIDQGRQAA 465          
BLAST of mRNA_M-pyrifera_M_contig112788.2665.1 vs. uniprot
Match: A0A2N5JV27_9ACTN (Coproporphyrinogen III oxidase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A2N5JV27_9ACTN)

HSP 1 Score: 83.2 bits (204), Expect = 7.340e-17
Identity = 42/76 (55.26%), Postives = 53/76 (69.74%), Query Frame = 1
Query:    1 RLRTELETTIGLSGDA-AHRVSEWRRCLPQYRPGHLDRCDQIDEWLARDAPGVVVAGASMRGLGLPACVRQGRAAV 225
            RL  ELE  +GL  +  A RV+ W    PQYRPGHL R  +I+  LARDAP V +AGA++RG+G+PAC+ QGRAA 
Sbjct:  415 RLHHELEQALGLRREPLAGRVTRWAGAFPQYRPGHLARVARIEAALARDAPSVQLAGAALRGVGIPACIAQGRAAA 490          
BLAST of mRNA_M-pyrifera_M_contig112788.2665.1 vs. uniprot
Match: A0A6B1H3C9_9ACTN (Coproporphyrinogen III oxidase n=2 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6B1H3C9_9ACTN)

HSP 1 Score: 80.5 bits (197), Expect = 6.120e-16
Identity = 40/78 (51.28%), Postives = 52/78 (66.67%), Query Frame = 1
Query:    4 LRTELETTIGLSGDAAH-RVSEWRRCLPQYRPGHLDRCDQIDEWLARDAPGVVVAGASMRGLGLPACVRQGRAAVADS 234
            +RT+L  T+GL+ +    R+S W R LPQ+RPGHL+    I++ LA DAP V V GA  RGLG+PAC+ QGR A   S
Sbjct:  359 VRTDLAATMGLNAEPHEVRISRWERSLPQFRPGHLELVADIEQSLANDAPWVQVTGAWARGLGIPACIHQGRQAAQAS 436          
BLAST of mRNA_M-pyrifera_M_contig112788.2665.1 vs. uniprot
Match: A0A6N8YAV1_9ACTN (Uncharacterized protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6N8YAV1_9ACTN)

HSP 1 Score: 74.7 bits (182), Expect = 1.410e-15
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 1
Query:   55 RVSEWRRCLPQYRPGHLDRCDQIDEWLARDAPGVVVAGASMRGLGLPACVRQGRAAV 225
            RV+ W R LPQYRPGHL+R   +D  LA   PG+V  GA+ RGLGLPACVR  RAA 
Sbjct:   49 RVTPWLRSLPQYRPGHLERVAAVDACLADGTPGLVATGAAFRGLGLPACVRDARAAA 105          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig112788.2665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X5WN89_9ACTN2.300e-2771.05Coproporphyrinogen III oxidase n=1 Tax=Actinomycet... [more]
A0A7K1Z8M4_9ACTN1.510e-2671.83Coproporphyrinogen III oxidase n=2 Tax=Acidimicrob... [more]
A0A2E8L966_9ACTN8.820e-2460.53Amino_oxidase domain-containing protein (Fragment)... [more]
A0A2E0SYI9_9ACTN3.950e-2362.82Coproporphyrinogen III oxidase n=7 Tax=Acidimicrob... [more]
A0A3M2G2H5_ACTSX1.640e-2057.89Protoporphyrinogen oxidase (Fragment) n=1 Tax=Acti... [more]
A0A5Q2RQG3_9ACTN1.990e-1751.35Coproporphyrinogen III oxidase n=1 Tax=Actinomarin... [more]
A0A6N7FUS3_9ACTN7.100e-1754.67Coproporphyrinogen III oxidase n=1 Tax=Acidimicrob... [more]
A0A2N5JV27_9ACTN7.340e-1755.26Coproporphyrinogen III oxidase n=1 Tax=Actinomycet... [more]
A0A6B1H3C9_9ACTN6.120e-1651.28Coproporphyrinogen III oxidase n=2 Tax=Acidimicrob... [more]
A0A6N8YAV1_9ACTN1.410e-1561.40Uncharacterized protein n=1 Tax=Acidimicrobiaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig112788contigM-pyrifera_M_contig112788:15..254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score75.9
Seed ortholog evalue9.7e-12
Seed eggNOG ortholog1229780.BN381_100023
Preferred namehemG
KEGG rclassRC00885
KEGG koko:K00231
KEGG ReactionR03222,R04178
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG ModuleM00121
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
EggNOG OGs2GMMA@201174,3UXBD@52018,COG1232@1,COG1232@2
EC1.3.3.15,1.3.3.4
COG Functional cat.H
Best tax levelunclassified Actinobacteria (class)
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size240
Cds size240
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815641.6517403-CDS-M-pyrifera_M_contig112788:14..2541622815641.6517403-CDS-M-pyrifera_M_contig112788:14..254Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112788 15..254 +
1692277501.0707834-CDS-M-pyrifera_M_contig112788:14..2541692277501.0707834-CDS-M-pyrifera_M_contig112788:14..254Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig112788 15..254 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig112788.2665.1prot_M-pyrifera_M_contig112788.2665.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig112788 15..254 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig112788.2665.1

>prot_M-pyrifera_M_contig112788.2665.1 ID=prot_M-pyrifera_M_contig112788.2665.1|Name=mRNA_M-pyrifera_M_contig112788.2665.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=80bp
RLRTELETTIGLSGDAAHRVSEWRRCLPQYRPGHLDRCDQIDEWLARDAP
GVVVAGASMRGLGLPACVRQGRAAVADSP*
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mRNA from alignment at M-pyrifera_M_contig112788:15..254+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig112788.2665.1 ID=mRNA_M-pyrifera_M_contig112788.2665.1|Name=mRNA_M-pyrifera_M_contig112788.2665.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=240bp|location=Sequence derived from alignment at M-pyrifera_M_contig112788:15..254+ (Macrocystis pyrifera P11B4 male)
CGATTGCGCACCGAGCTCGAGACCACGATCGGGCTCAGCGGCGACGCCGC CCATCGAGTGAGCGAGTGGCGCCGCTGCCTCCCCCAGTACCGACCGGGCC ATCTCGACCGCTGCGACCAGATCGACGAATGGCTGGCCCGCGACGCCCCC GGAGTGGTGGTGGCGGGCGCGTCGATGCGCGGGCTGGGCCTCCCCGCATG CGTGCGCCAGGGGCGCGCCGCTGTCGCCGATTCCCCCTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig112788:15..254+

>mRNA_M-pyrifera_M_contig112788.2665.1 ID=mRNA_M-pyrifera_M_contig112788.2665.1|Name=mRNA_M-pyrifera_M_contig112788.2665.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=480bp|location=Sequence derived from alignment at M-pyrifera_M_contig112788:15..254+ (Macrocystis pyrifera P11B4 male)
CGATTGCGCACCGAGCTCGAGACCACGATCGGGCTCAGCGGCGACGCCGC
CCATCGAGTGAGCGAGTGGCGCCGCTGCCTCCCCCAGTACCGACCGGGCC
ATCTCGACCGCTGCGACCAGATCGACGAATGGCTGGCCCGCGACGCCCCC
GGAGTGGTGGTGGCGGGCGCGTCGATGCGCGGGCTGGGCCTCCCCGCATG
CGTGCGCCAGGGGCGCGCCGCTGTCGCCGATTCCCCCTGACGATTGCGCA
CCGAGCTCGAGACCACGATCGGGCTCAGCGGCGACGCCGCCCATCGAGTG
AGCGAGTGGCGCCGCTGCCTCCCCCAGTACCGACCGGGCCATCTCGACCG
CTGCGACCAGATCGACGAATGGCTGGCCCGCGACGCCCCCGGAGTGGTGG
TGGCGGGCGCGTCGATGCGCGGGCTGGGCCTCCCCGCATGCGTGCGCCAG
GGGCGCGCCGCTGTCGCCGATTCCCCCTGA
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