mRNA_M-pyrifera_M_contig101150.245.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101150.245.1
Unique NamemRNA_M-pyrifera_M_contig101150.245.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101150.245.1 vs. uniprot
Match: A0A7S1C583_9STRA (Beta-amylase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C583_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.740e-44
Identity = 80/141 (56.74%), Postives = 94/141 (66.67%), Query Frame = 1
Query:   10 IPTYVMLNLDFITNENTLANPNKLSSNLATLAGAGVEGVMADVWWGLTEPSS-QAYNFSAYVELANIVHSSSLKLQVVMSAHSCGGNVGDACNIPIPSWVRQTNP---FYVDREGGKDAEYVSLFFDSVALSDGRTPVQAY 420
            IP YVML LD + + N L +PN L S L  LA  GV GVM DVWWGL E S+ QAYNFSAY ELA++V  + +    VMS H CGGNVGD CNIP+PSW R T+    +Y D +G KD EY+SLF D  A   GRTP+Q Y
Sbjct:   66 IPVYVMLQLDVVNSNNELNDPNGLKSQLQQLASGGVAGVMGDVWWGLCERSAPQAYNFSAYKELADMVQGAGMSYHPVMSFHQCGGNVGDKCNIPLPSWARSTSTDGVWYQDAQGNKDYEYISLFADETAAFGGRTPIQIY 206          
BLAST of mRNA_M-pyrifera_M_contig101150.245.1 vs. uniprot
Match: A0A7R9ZVU5_9DINO (Beta-amylase (Fragment) n=1 Tax=Pyrodinium bahamense TaxID=73915 RepID=A0A7R9ZVU5_9DINO)

HSP 1 Score: 145 bits (367), Expect = 1.940e-41
Identity = 72/139 (51.80%), Postives = 93/139 (66.91%), Query Frame = 1
Query:    7 AIPTYVMLNLDFITNENTLANPNKLSSNLATLAGAGVEGVMADVWWGLTEPSSQAYNFSAYVELANIVHSSSLKLQVVMSAHSCGGNVGDACNIPIPSWVRQTNP-FYVDREGGKDAEYVSLFFDSVALSDGRTPVQAY 420
            A   +VML LD +TNE  L     L+S L  L GA V+G+M DVWWG+TEP+ +AYNF AY +L  +     +K+Q V S HSCGGNVGD+CNIP+PS+V  T   +Y D EG +D EY+SLF D+  +  GRTP+Q Y
Sbjct:   35 ASKVFVMLPLDTVTNEGDLKEQGTLASQLDQLKGAQVDGIMTDVWWGVTEPNPKAYNFHAYQQLVKMAKDRGMKVQFVTSFHSCGGNVGDSCNIPLPSFVTGTGGIWYKDHEGNEDKEYISLFADNATVG-GRTPLQMY 172          
BLAST of mRNA_M-pyrifera_M_contig101150.245.1 vs. uniprot
Match: A0A6A2YX00_HIBSY (Beta-amylase n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YX00_HIBSY)

HSP 1 Score: 143 bits (360), Expect = 9.090e-40
Identity = 72/143 (50.35%), Postives = 91/143 (63.64%), Query Frame = 1
Query:   10 IPTYVMLNLDFITNENTLANPNKLSSNLATLAGAGVEGVMADVWWGLTEPSSQA-YNFSAYVELANIVHSSSLKLQVVMSAHSCGGNVGDACNIPIPSWVRQT---NP--FYVDREGGKDAEYVSLFFDSVALSDGRTPVQAY 420
            +P +VML LD +T+   L  P  ++++L  L  AGVEGVM D WWGL E      YN+  Y EL  +V    LKLQVVMS H CGGNVGD+C+IP+P WV Q    NP   Y D+ G ++ EY+SL  DSV +  GRTP+QAY
Sbjct:   81 VPVFVMLPLDTVTHGGNLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELVKMVEKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLQEISKNPDLVYTDKSGKRNPEYISLGCDSVPVLRGRTPIQAY 223          
BLAST of mRNA_M-pyrifera_M_contig101150.245.1 vs. uniprot
Match: A0A438ITS1_VITVI (Beta-amylase n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438ITS1_VITVI)

HSP 1 Score: 141 bits (356), Expect = 5.580e-39
Identity = 69/146 (47.26%), Postives = 90/146 (61.64%), Query Frame = 1
Query:    1 GHAIPTYVMLNLDFITNENTLANPNKLSSNLATLAGAGVEGVMADVWWGLTEPSS-QAYNFSAYVELANIVHSSSLKLQVVMSAHSCGGNVGDACNIPIPSWV-----RQTNPFYVDREGGKDAEYVSLFFDSVALSDGRTPVQAY 420
            G  +P +VML LD ++    L  P  ++++L  L  AGVEGVM D WWGL E      YN+  Y EL  +V    LKLQVVMS H CGGNVGD+C+IP+P WV     + T+  Y DR G ++ EY+SL  DS+ +  GRTP+Q Y
Sbjct:   78 GSRVPVFVMLPLDTVSFGGNLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPMKYNWEGYAELVQMVQRHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEISKNTDLVYTDRSGRRNPEYISLGCDSIPVLRGRTPIQVY 223          
BLAST of mRNA_M-pyrifera_M_contig101150.245.1 vs. uniprot
Match: A0A834TVE7_9FABA (Beta-amylase n=1 Tax=Senna tora TaxID=362788 RepID=A0A834TVE7_9FABA)

HSP 1 Score: 147 bits (370), Expect = 5.940e-39
Identity = 74/146 (50.68%), Postives = 94/146 (64.38%), Query Frame = 1
Query:    1 GHAIPTYVMLNLDFITNENTLANPNKLSSNLATLAGAGVEGVMADVWWGLTEPSSQ-AYNFSAYVELANIVHSSSLKLQVVMSAHSCGGNVGDACNIPIPSWVRQT---NP--FYVDREGGKDAEYVSLFFDSVALSDGRTPVQAY 420
            G  +P YVML LD +T E  L     ++++L  L  AGVEGVM D WWGL E     +YN+ AY+EL ++V    LKLQVVMS H CGGNVGD+C+IP+P WV +    NP   Y DR G ++ EY+SL  DS+ +  GRTPVQ Y
Sbjct:   77 GRRVPVYVMLPLDTVTMEGRLNKARAMNASLMALKSAGVEGVMVDAWWGLVEKDGPFSYNWDAYLELVHMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVMEEISKNPDLIYTDRSGRRNPEYISLGCDSLPVLKGRTPVQVY 222          
BLAST of mRNA_M-pyrifera_M_contig101150.245.1 vs. uniprot
Match: A0A2P5YQ45_GOSBA (Beta-amylase n=1 Tax=Gossypium barbadense TaxID=3634 RepID=A0A2P5YQ45_GOSBA)

HSP 1 Score: 140 bits (352), Expect = 9.290e-39
Identity = 73/143 (51.05%), Postives = 89/143 (62.24%), Query Frame = 1
Query:   10 IPTYVMLNLDFITNENTLANPNKLSSNLATLAGAGVEGVMADVWWGLTEPSSQA-YNFSAYVELANIVHSSSLKLQVVMSAHSCGGNVGDACNIPIPSWVRQT---NP--FYVDREGGKDAEYVSLFFDSVALSDGRTPVQAY 420
            +P YVML LD IT   +L  P  + ++L  L  AGVEGVM D WWGL E      YN+  Y EL  +V    LKLQVVMS H CGGNVGD+C+IP+P WV +    NP   Y DR G ++ EY+SL  DSV +  GR P+QAY
Sbjct:   81 VPVYVMLPLDTITLGGSLNKPRAMKTSLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYAELVKMVEKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEEISKNPDLVYTDRLGRRNPEYISLGCDSVPVLRGRKPIQAY 223          
BLAST of mRNA_M-pyrifera_M_contig101150.245.1 vs. uniprot
Match: A0A8K0MJH9_9ROSA (Uncharacterized protein n=1 Tax=Rhamnella rubrinervis TaxID=2594499 RepID=A0A8K0MJH9_9ROSA)

HSP 1 Score: 146 bits (368), Expect = 1.360e-38
Identity = 72/143 (50.35%), Postives = 93/143 (65.03%), Query Frame = 1
Query:   10 IPTYVMLNLDFITNENTLANPNKLSSNLATLAGAGVEGVMADVWWGLTEPSSQA-YNFSAYVELANIVHSSSLKLQVVMSAHSCGGNVGDACNIPIPSWVRQT---NP--FYVDREGGKDAEYVSLFFDSVALSDGRTPVQAY 420
            +P +VML LD +T+  +L  P  ++++L  L  AGVEGVM D WWGL E      YN+  Y EL ++VH   LKLQVVMS H CGGNVGD+CNIP+P WV +    NP   Y DR G ++ EY+SL  DS+ +  GRTP+Q Y
Sbjct:   92 VPVFVMLPLDTVTHGGSLNKPRAMNASLMALKSAGVEGVMVDAWWGLVEKDGPLKYNWEGYAELVHMVHKHGLKLQVVMSFHQCGGNVGDSCNIPLPPWVLEETSKNPDLVYTDRSGRRNPEYISLGCDSMPVLRGRTPIQVY 234          
BLAST of mRNA_M-pyrifera_M_contig101150.245.1 vs. uniprot
Match: A0A7J6V518_THATH (Beta-amylase (Fragment) n=1 Tax=Thalictrum thalictroides TaxID=46969 RepID=A0A7J6V518_THATH)

HSP 1 Score: 140 bits (353), Expect = 1.910e-38
Identity = 69/143 (48.25%), Postives = 92/143 (64.34%), Query Frame = 1
Query:   10 IPTYVMLNLDFITNENTLANPNKLSSNLATLAGAGVEGVMADVWWGLTEPSS-QAYNFSAYVELANIVHSSSLKLQVVMSAHSCGGNVGDACNIPIPSWVRQT---NP--FYVDREGGKDAEYVSLFFDSVALSDGRTPVQAY 420
            +P Y+ML LD +T    L  P  L+++L  L  +GVEGVM D WWGL E +    YN+S YV+L  +V    LK+QVVMS H CGGNVGD+C+IP+P WV +    NP   Y D+ G ++ EY+SL  DS+ +  GRTP+Q Y
Sbjct:   87 VPVYIMLPLDTVTIAGNLHRPKALNASLMALKSSGVEGVMVDAWWGLVEKNGPMKYNWSGYVDLIQMVEKHGLKIQVVMSFHQCGGNVGDSCSIPLPPWVLEEISKNPDIVYTDKSGRRNPEYISLGCDSLPVLAGRTPIQVY 229          
BLAST of mRNA_M-pyrifera_M_contig101150.245.1 vs. uniprot
Match: A0A388MCS4_CHABU (Beta-amylase n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388MCS4_CHABU)

HSP 1 Score: 147 bits (371), Expect = 2.310e-38
Identity = 73/146 (50.00%), Postives = 95/146 (65.07%), Query Frame = 1
Query:    1 GHAIPTYVMLNLDFITNENTLANPNKLSSNLATLAGAGVEGVMADVWWGLTEPSS-QAYNFSAYVELANIVHSSSLKLQVVMSAHSCGGNVGDACNIPIPSWVRQT---NP--FYVDREGGKDAEYVSLFFDSVALSDGRTPVQAY 420
            G+ +P Y+ML LD +   NTL  P  L ++L  L  AGVEGVM DVWWG+ E      Y ++AY +L  +VH + LK+QVVMS H CGGNVGD+C IP+P WV Q    NP   Y D+ G ++ EY+SL  DS+ +  GR+PVQAY
Sbjct:  394 GNGVPVYIMLPLDTVNMNNTLTRPRALRASLTALKSAGVEGVMVDVWWGIVEGQEPHKYRWTAYQDLVKMVHDAGLKMQVVMSFHQCGGNVGDSCLIPLPQWVLQEIEKNPDIVYTDKAGKRNLEYLSLGCDSLPVLRGRSPVQAY 539          
BLAST of mRNA_M-pyrifera_M_contig101150.245.1 vs. uniprot
Match: A0A6A2X8K5_HIBSY (Beta-amylase n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2X8K5_HIBSY)

HSP 1 Score: 145 bits (365), Expect = 3.670e-38
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 1
Query:   10 IPTYVMLNLDFITNENTLANPNKLSSNLATLAGAGVEGVMADVWWGLTEPSSQA-YNFSAYVELANIVHSSSLKLQVVMSAHSCGGNVGDACNIPIPSWVRQT---NP--FYVDREGGKDAEYVSLFFDSVALSDGRTPVQAY 420
            +P +VML LD +T+  +L  P  +S++L  L  AGVEGVM D WWGL E      YN+  YVEL  +V    LKLQVVMS H CGGNVGD+C+IP+P WV Q    NP   Y D+ G ++ EY+SL  DS+ +  GRTP+QAY
Sbjct:   99 VPVFVMLPLDTVTHGGSLNKPRAMSASLMALKSAGVEGVMVDAWWGLVEKDGPLNYNWEGYVELVKMVEKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLQEISKNPDLVYTDKSGRRNPEYISLGCDSLPVLRGRTPIQAY 241          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101150.245.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1C583_9STRA1.740e-4456.74Beta-amylase n=1 Tax=Bicosoecida sp. CB-2014 TaxID... [more]
A0A7R9ZVU5_9DINO1.940e-4151.80Beta-amylase (Fragment) n=1 Tax=Pyrodinium bahamen... [more]
A0A6A2YX00_HIBSY9.090e-4050.35Beta-amylase n=1 Tax=Hibiscus syriacus TaxID=10633... [more]
A0A438ITS1_VITVI5.580e-3947.26Beta-amylase n=1 Tax=Vitis vinifera TaxID=29760 Re... [more]
A0A834TVE7_9FABA5.940e-3950.68Beta-amylase n=1 Tax=Senna tora TaxID=362788 RepID... [more]
A0A2P5YQ45_GOSBA9.290e-3951.05Beta-amylase n=1 Tax=Gossypium barbadense TaxID=36... [more]
A0A8K0MJH9_9ROSA1.360e-3850.35Uncharacterized protein n=1 Tax=Rhamnella rubriner... [more]
A0A7J6V518_THATH1.910e-3848.25Beta-amylase (Fragment) n=1 Tax=Thalictrum thalict... [more]
A0A388MCS4_CHABU2.310e-3850.00Beta-amylase n=1 Tax=Chara braunii TaxID=69332 Rep... [more]
A0A6A2X8K5_HIBSY3.670e-3851.05Beta-amylase n=2 Tax=Hibiscus syriacus TaxID=10633... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101150contigM-pyrifera_M_contig101150:251..670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score139.0
Seed ortholog evalue1.5e-30
Seed eggNOG ortholog3827.XP_004508980.1
Preferred nameCT-BMY
KEGG koko:K01177
KEGG ReactionR02112,R11262
KEGG Pathwayko00500,map00500
Hectar predicted targeting categoryother localisation
GOsGO:0000023,GO:0000024,GO:0000272,GO:0003674,GO:0003824,GO:0004553,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005975,GO:0005976,GO:0005982,GO:0005983,GO:0005984,GO:0006073,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009251,GO:0009266,GO:0009311,GO:0009312,GO:0009409,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009987,GO:0016051,GO:0016052,GO:0016160,GO:0016161,GO:0016787,GO:0016798,GO:0034637,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044042,GO:0044237,GO:0044238,GO:0044247,GO:0044248,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044275,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046351,GO:0050896,GO:0071704,GO:1901575,GO:1901576
EggNOG free text desc.Beta-amylase
EggNOG OGs2CJU3@1,2QTBX@2759,37IM6@33090,3GDU5@35493,4JE5V@91835
EC3.2.1.2
COG Functional cat.G
CAZyGH14
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size420
Cds size396
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815509.1210613-UTR-M-pyrifera_M_contig101150:250..2741622815509.1210613-UTR-M-pyrifera_M_contig101150:250..274Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig101150 251..274 +
1692277443.5120046-UTR-M-pyrifera_M_contig101150:250..2741692277443.5120046-UTR-M-pyrifera_M_contig101150:250..274Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig101150 251..274 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815509.1347778-CDS-M-pyrifera_M_contig101150:274..6701622815509.1347778-CDS-M-pyrifera_M_contig101150:274..670Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101150 275..670 +
1692277443.5248816-CDS-M-pyrifera_M_contig101150:274..6701692277443.5248816-CDS-M-pyrifera_M_contig101150:274..670Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101150 275..670 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101150.245.1prot_M-pyrifera_M_contig101150.245.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101150 275..670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101150.245.1

>prot_M-pyrifera_M_contig101150.245.1 ID=prot_M-pyrifera_M_contig101150.245.1|Name=mRNA_M-pyrifera_M_contig101150.245.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=132bp
MLNLDFITNENTLANPNKLSSNLATLAGAGVEGVMADVWWGLTEPSSQAY
NFSAYVELANIVHSSSLKLQVVMSAHSCGGNVGDACNIPIPSWVRQTNPF
YVDREGGKDAEYVSLFFDSVALSDGRTPVQAY
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mRNA from alignment at M-pyrifera_M_contig101150:251..670+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101150.245.1 ID=mRNA_M-pyrifera_M_contig101150.245.1|Name=mRNA_M-pyrifera_M_contig101150.245.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=420bp|location=Sequence derived from alignment at M-pyrifera_M_contig101150:251..670+ (Macrocystis pyrifera P11B4 male)
GGGCATGCTATTCCCACCTATGTCATGCTCAACCTCGATTTTATCACGAA CGAGAATACATTGGCAAACCCCAACAAGTTGTCATCGAATTTGGCTACTT TGGCTGGAGCTGGCGTGGAGGGAGTGATGGCAGATGTGTGGTGGGGCTTG ACTGAACCGAGTTCTCAGGCGTACAACTTTTCAGCGTACGTGGAGCTCGC AAATATCGTGCATAGTTCAAGCTTGAAGCTTCAAGTCGTGATGAGCGCAC ACTCTTGCGGTGGAAACGTTGGTGATGCTTGTAACATTCCCATCCCATCT TGGGTGCGCCAGACGAATCCGTTTTATGTTGATAGGGAAGGTGGAAAGGA TGCTGAGTATGTTTCGTTGTTTTTCGACTCTGTGGCATTGTCTGACGGAC GCACCCCGGTGCAAGCATAT
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101150:251..670+

>mRNA_M-pyrifera_M_contig101150.245.1 ID=mRNA_M-pyrifera_M_contig101150.245.1|Name=mRNA_M-pyrifera_M_contig101150.245.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=792bp|location=Sequence derived from alignment at M-pyrifera_M_contig101150:251..670+ (Macrocystis pyrifera P11B4 male)
ATGCTCAACCTCGATTTTATCACGAACGAGAATACATTGGCAAACCCCAA
CAAGTTGTCATCGAATTTGGCTACTTTGGCTGGAGCTGGCGTGGAGGGAG
TGATGGCAGATGTGTGGTGGGGCTTGACTGAACCGAGTTCTCAGGCGTAC
AACTTTTCAGCGTACGTGGAGCTCGCAAATATCGTGCATAGTTCAAGCTT
GAAGCTTCAAGTCGTGATGAGCGCACACTCTTGCGGTGGAAACGTTGGTG
ATGCTTGTAACATTCCCATCCCATCTTGGGTGCGCCAGACGAATCCGTTT
TATGTTGATAGGGAAGGTGGAAAGGATGCTGAGTATGTTTCGTTGTTTTT
CGACTCTGTGGCATTGTCTGACGGACGCACCCCGGTGCAAGCATATATGC
TCAACCTCGATTTTATCACGAACGAGAATACATTGGCAAACCCCAACAAG
TTGTCATCGAATTTGGCTACTTTGGCTGGAGCTGGCGTGGAGGGAGTGAT
GGCAGATGTGTGGTGGGGCTTGACTGAACCGAGTTCTCAGGCGTACAACT
TTTCAGCGTACGTGGAGCTCGCAAATATCGTGCATAGTTCAAGCTTGAAG
CTTCAAGTCGTGATGAGCGCACACTCTTGCGGTGGAAACGTTGGTGATGC
TTGTAACATTCCCATCCCATCTTGGGTGCGCCAGACGAATCCGTTTTATG
TTGATAGGGAAGGTGGAAAGGATGCTGAGTATGTTTCGTTGTTTTTCGAC
TCTGTGGCATTGTCTGACGGACGCACCCCGGTGCAAGCATAT
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