mRNA_M-pyrifera_M_contig101145.243.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101145.243.1
Unique NamemRNA_M-pyrifera_M_contig101145.243.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101145.243.1 vs. uniprot
Match: A0A517PG46_9PLAN (Nickel uptake substrate-specific transmembrane region n=4 Tax=Gimesia TaxID=1649453 RepID=A0A517PG46_9PLAN)

HSP 1 Score: 462 bits (1188), Expect = 4.830e-154
Identity = 223/223 (100.00%), Postives = 223/223 (100.00%), Query Frame = 1
Query:    1 RAFTLDRDQSGDQLTKPPAFPDHPVRLKLDGTTPLKVKVQTPDGKPLAGIKVYPWLLNKPGEPRELNLGSLFYGNHLLEQTTDAEGITVFKWIPHWQKQQLVIWPHTEDYNNVRGTYHPATGKGLLTMELDQLVPISGQVRQADGTPAKGITVTAVGDGYQADTFRESVTTDDDGRYSLKVSPYMVYLVVAGNQTQASTPRTDFAVMPEQPVTDLDFKLRPAT 669
            RAFTLDRDQSGDQLTKPPAFPDHPVRLKLDGTTPLKVKVQTPDGKPLAGIKVYPWLLNKPGEPRELNLGSLFYGNHLLEQTTDAEGITVFKWIPHWQKQQLVIWPHTEDYNNVRGTYHPATGKGLLTMELDQLVPISGQVRQADGTPAKGITVTAVGDGYQADTFRESVTTDDDGRYSLKVSPYMVYLVVAGNQTQASTPRTDFAVMPEQPVTDLDFKLRPAT
Sbjct:  207 RAFTLDRDQSGDQLTKPPAFPDHPVRLKLDGTTPLKVKVQTPDGKPLAGIKVYPWLLNKPGEPRELNLGSLFYGNHLLEQTTDAEGITVFKWIPHWQKQQLVIWPHTEDYNNVRGTYHPATGKGLLTMELDQLVPISGQVRQADGTPAKGITVTAVGDGYQADTFRESVTTDDDGRYSLKVSPYMVYLVVAGNQTQASTPRTDFAVMPEQPVTDLDFKLRPAT 429          
BLAST of mRNA_M-pyrifera_M_contig101145.243.1 vs. uniprot
Match: A0A518FGM5_9PLAN (Nickel uptake substrate-specific transmembrane region n=1 Tax=Gimesia panareensis TaxID=2527978 RepID=A0A518FGM5_9PLAN)

HSP 1 Score: 355 bits (911), Expect = 3.260e-113
Identity = 169/223 (75.78%), Postives = 191/223 (85.65%), Query Frame = 1
Query:    1 RAFTLDRDQSGDQLTKPPAFPDHPVRLKLDGTTPLKVKVQTPDGKPLAGIKVYPWLLNKPGEPRELNLGSLFYGNHLLEQTTDAEGITVFKWIPHWQKQQLVIWPHTEDYNNVRGTYHPATGKGLLTMELDQLVPISGQVRQADGTPAKGITVTAVGDGYQADTFRESVTTDDDGRYSLKVSPYMVYLVVAGNQTQASTPRTDFAVMPEQPVTDLDFKLRPAT 669
            RAFTL+R Q GDQLTKPPA P+HPVRLKLDG TPLKVKVQT DGKPLAGIKVYPW L K GEPRE NL SLFY + LLEQTTD  G TVFKWIPHWQ++Q V+WP TEDY + RGTY+P TGKG+LT+EL+QLVPISGQVR ++G+PA+GI VTAVGDGYQ D   E+VTTDDDGRY++KVSP+M YLVVAGNQT AS P+TDF V+P QPVT LDF+LRPAT
Sbjct:  183 RAFTLERGQYGDQLTKPPALPEHPVRLKLDGATPLKVKVQTSDGKPLAGIKVYPWYLTKSGEPREFNLSSLFYESKLLEQTTDEAGTTVFKWIPHWQQEQFVVWPRTEDYTHERGTYNPKTGKGVLTIELEQLVPISGQVRLSNGSPARGIQVTAVGDGYQTDFSPETVTTDDDGRYTIKVSPHMAYLVVAGNQTLASAPQTDFTVLPHQPVTGLDFQLRPAT 405          
BLAST of mRNA_M-pyrifera_M_contig101145.243.1 vs. uniprot
Match: A0A2E2C7R1_9PLAN (Thioredoxin domain-containing protein n=5 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C7R1_9PLAN)

HSP 1 Score: 345 bits (886), Expect = 1.500e-109
Identity = 165/223 (73.99%), Postives = 187/223 (83.86%), Query Frame = 1
Query:    1 RAFTLDRDQSGDQLTKPPAFPDHPVRLKLDGTTPLKVKVQTPDGKPLAGIKVYPWLLNKPGEPRELNLGSLFYGNHLLEQTTDAEGITVFKWIPHWQKQQLVIWPHTEDYNNVRGTYHPATGKGLLTMELDQLVPISGQVRQADGTPAKGITVTAVGDGYQADTFRESVTTDDDGRYSLKVSPYMVYLVVAGNQTQASTPRTDFAVMPEQPVTDLDFKLRPAT 669
            RAFTL+R Q  DQLTKPPA PDHPVRLKLDG TPLKVKVQ+P+G+ LAGIKVYPW L KPGEP E NL SLFYG+ LLEQTTD EGI VFKWIPHWQKQQ V+WP  +DY+  R TY+PAT  G+LTMEL+QLVPISGQVR ++G+PAKGITVTA G GYQ D+FRE+VTTD +GRY++K  PYMVYLVVAG+QTQAS P T FAV+P  PVTDLDF+  PAT
Sbjct:  188 RAFTLERGQHVDQLTKPPALPDHPVRLKLDGATPLKVKVQSPEGQALAGIKVYPWYLTKPGEPGEFNLSSLFYGSDLLEQTTDTEGIAVFKWIPHWQKQQFVVWPRMDDYSKTRATYNPATDNGVLTMELEQLVPISGQVRLSNGSPAKGITVTAAGVGYQIDSFRETVTTDANGRYTIKAWPYMVYLVVAGDQTQASVPHTCFAVLPHHPVTDLDFQFVPAT 410          
BLAST of mRNA_M-pyrifera_M_contig101145.243.1 vs. uniprot
Match: A0A517R868_9PLAN (Nickel uptake substrate-specific transmembrane region n=2 Tax=Gimesia alba TaxID=2527973 RepID=A0A517R868_9PLAN)

HSP 1 Score: 266 bits (680), Expect = 2.350e-79
Identity = 126/223 (56.50%), Postives = 167/223 (74.89%), Query Frame = 1
Query:    1 RAFTLDRDQSGDQLTKPPAFPDHPVRLKLDGTTPLKVKVQTPDGKPLAGIKVYPWLLNKPGEPRELNLGSLFYGNHLLEQTTDAEGITVFKWIPHWQKQQLVIWPHTEDYNNVRGTYHPATGKGLLTMELDQLVPISGQVRQADGTPAKGITVTAVGDGYQADTFRESVTTDDDGRYSLKVSPYMVYLVVAGNQTQASTPRTDFAVMPEQPVTDLDFKLRPAT 669
            +A+ L R QSGD++T+PPAFPDHPV+LKL+G  PLKV+++  DG P+AG+KVYPWLL KP + ++LNL    +   L+EQTTDAEG  VF+WIP WQK  L IWP  +++   RG Y P TG G LT++L++LVPISG++   DG+PAKGI+V+A G+GYQ D+FR+S  TD+ GRY +K +P  VYLVV  N   ASTP T FA+ P +P+ +LDF+LRPAT
Sbjct:  255 KAYVLPRGQSGDKITRPPAFPDHPVQLKLEGAQPLKVQLKETDGTPIAGVKVYPWLLQKPDQTQDLNLS---FFTSLVEQTTDAEGTVVFQWIPGWQKLPLTIWPRDKEHVLQRGNYDPKTGDGTLTIKLEKLVPISGRITLPDGSPAKGISVSASGEGYQFDSFRKSAHTDEQGRYVIKAAPNQVYLVVVNNGEWASTPHTGFALWPGKPIENLDFQLRPAT 474          
BLAST of mRNA_M-pyrifera_M_contig101145.243.1 vs. uniprot
Match: A0A517V664_9PLAN (Nickel uptake substrate-specific transmembrane region n=1 Tax=Gimesia algae TaxID=2527971 RepID=A0A517V664_9PLAN)

HSP 1 Score: 263 bits (672), Expect = 1.930e-78
Identity = 127/223 (56.95%), Postives = 156/223 (69.96%), Query Frame = 1
Query:    1 RAFTLDRDQSGDQLTKPPAFPDHPVRLKLDGTTPLKVKVQTPDGKPLAGIKVYPWLLNKPGEPRELNLGSLFYGNHLLEQTTDAEGITVFKWIPHWQKQQLVIWPHTEDYNNVRGTYHPATGKGLLTMELDQLVPISGQVRQADGTPAKGITVTAVGDGYQADTFRESVTTDDDGRYSLKVSPYMVYLVVAGNQTQASTPRTDFAVMPEQPVTDLDFKLRPAT 669
            +AFTL R+Q GDQL KPP  P+ P+RL LDGT PLKVKV+  DG PL G  V PW L K GEPR+LNL S FY   L++  TD  G   F WIPHWQK  L IWPH ++Y + R TY P  G+G LTM+L++LVP+SG+V   DG+PAKGI V A G GYQ D+F ++V TDD GRYS    P  VYLV+AGN+  ++ P T FAV P +P+ +LDFKL+PAT
Sbjct:  209 KAFTLSREQVGDQLVKPPVVPESPIRLTLDGTQPLKVKVEEADGTPLTGFHVVPWYLKKEGEPRDLNL-SYFYS--LVQSQTDKSGTASFDWIPHWQKTALTIWPHNQEYEHQRSTYDPQKGQGTLTMKLEKLVPVSGKVTLPDGSPAKGIPVAADGAGYQFDSFHKTVQTDDQGRYSFNAEPNQVYLVIAGNEKWSAAPHTGFAVWPGKPIQNLDFKLQPAT 428          
BLAST of mRNA_M-pyrifera_M_contig101145.243.1 vs. uniprot
Match: A0A518I4R9_9PLAN (Nickel uptake substrate-specific transmembrane region n=1 Tax=Gimesia fumaroli TaxID=2527976 RepID=A0A518I4R9_9PLAN)

HSP 1 Score: 256 bits (655), Expect = 4.770e-76
Identity = 119/223 (53.36%), Postives = 168/223 (75.34%), Query Frame = 1
Query:    1 RAFTLDRDQSGDQLTKPPAFPDHPVRLKLDGTTPLKVKVQTPDGKPLAGIKVYPWLLNKPGEPRELNLGSLFYGNHLLEQTTDAEGITVFKWIPHWQKQQLVIWPHTEDYNNVRGTYHPATGKGLLTMELDQLVPISGQVRQADGTPAKGITVTAVGDGYQADTFRESVTTDDDGRYSLKVSPYMVYLVVAGNQTQASTPRTDFAVMPEQPVTDLDFKLRPAT 669
            +A+ L R QSGD++T+PPA PDH V+LKL+G  PL+V+++ PDG P+AG+ V PW + KP +P++LNL S FY   L++QTTDAEG  VF WIP W +  L IWP  +++ + RG+Y P TG+G LT++L++LVPISG++   DG+PAKGI+V+A G+GYQ D+FR+S  TD+ GRY +K +P  VYLVV  ++  AS P T FA+ P++P+ +LDF+LRPAT
Sbjct:  199 KAYVLPRGQSGDKITRPPALPDHSVQLKLEGAQPLRVQLKEPDGTPIAGVNVSPWYIKKPDQPQDLNL-SYFY--KLIQQTTDAEGNVVFGWIPRWHQTPLTIWPRDQEHVHQRGSYDPKTGEGTLTIKLEKLVPISGKITLPDGSPAKGISVSASGEGYQFDSFRKSAHTDEQGRYVIKAAPNQVYLVVVNDKKWASAPHTGFALWPDKPIENLDFQLRPAT 418          
BLAST of mRNA_M-pyrifera_M_contig101145.243.1 vs. uniprot
Match: A0A517X3Q6_9PLAN (Nickel uptake substrate-specific transmembrane region n=2 Tax=Gimesia aquarii TaxID=2527964 RepID=A0A517X3Q6_9PLAN)

HSP 1 Score: 257 bits (656), Expect = 7.380e-76
Identity = 122/223 (54.71%), Postives = 164/223 (73.54%), Query Frame = 1
Query:    1 RAFTLDRDQSGDQLTKPPAFPDHPVRLKLDGTTPLKVKVQTPDGKPLAGIKVYPWLLNKPGEPRELNLGSLFYGNHLLEQTTDAEGITVFKWIPHWQKQQLVIWPHTEDYNNVRGTYHPATGKGLLTMELDQLVPISGQVRQADGTPAKGITVTAVGDGYQADTFRESVTTDDDGRYSLKVSPYMVYLVVAGNQTQASTPRTDFAVMPEQPVTDLDFKLRPAT 669
            +A+ L R QSGDQ+TKPP  PDHP+RL LDGT PL+V ++  + KPLAGIKVYPWLL KP +P++LNL S F    L+++TTD  G  VF+WIPHWQK  + IWP  +++ + RG Y P T +G LT++L++LVP+ G+V   DG+PAK I +T  G G+Q D+FR +V TD +GRY++K +P MVYLVV  ++  ASTP T FA+ P +P+ +LDFKLRPAT
Sbjct:  292 KAYVLPRGQSGDQITKPPELPDHPIRLTLDGTQPLEVHIKGTNDKPLAGIKVYPWLLKKPDQPQDLNL-SFFI--KLVQETTDKSGKAVFQWIPHWQKTPITIWPRDKEHVHQRGNYDPKTAEGSLTLKLEKLVPLGGRVTLPDGSPAKEIAITVSGKGHQIDSFRATVKTDKEGRYTIKAAPNMVYLVVVKDKMWASTPHTGFALWPGKPIRNLDFKLRPAT 511          
BLAST of mRNA_M-pyrifera_M_contig101145.243.1 vs. uniprot
Match: A0A2E2C936_9PLAN (Uncharacterized protein n=4 Tax=Planctomycetaceae TaxID=126 RepID=A0A2E2C936_9PLAN)

HSP 1 Score: 255 bits (652), Expect = 1.340e-75
Identity = 125/223 (56.05%), Postives = 152/223 (68.16%), Query Frame = 1
Query:    1 RAFTLDRDQSGDQLTKPPAFPDHPVRLKLDGTTPLKVKVQTPDGKPLAGIKVYPWLLNKPGEPRELNLGSLFYGNHLLEQTTDAEGITVFKWIPHWQKQQLVIWPHTEDYNNVRGTYHPATGKGLLTMELDQLVPISGQVRQADGTPAKGITVTAVGDGYQADTFRESVTTDDDGRYSLKVSPYMVYLVVAGNQTQASTPRTDFAVMPEQPVTDLDFKLRPAT 669
            RAFTL R+Q GDQL KPPA P+HP+RL LDGT PLKVKV+  DG PL G  V PW L K GEPR+LNL S FY   L++  TD  G   F WIPHWQK  L IWP  ++Y + R  Y P   +G LTM+L++LVP+SG+V   DG+PAKGI V A G GYQ D+F ++V TDD GRY     P  VYL++AGN+   + P T FAV P  P+ +LDFKL+PAT
Sbjct:  209 RAFTLSREQVGDQLVKPPAVPEHPIRLTLDGTQPLKVKVEDADGSPLTGFNVAPWYLKKEGEPRDLNL-SYFYS--LVQAQTDESGTASFGWIPHWQKTALTIWPRNQEYEHQRSMYDPQKDQGRLTMKLEKLVPVSGKVTLPDGSPAKGIPVAADGAGYQFDSFHKTVQTDDQGRYLFNAEPNQVYLMIAGNEKWRAAPHTGFAVWPGTPIQNLDFKLQPAT 428          
BLAST of mRNA_M-pyrifera_M_contig101145.243.1 vs. uniprot
Match: A0A517ZZC5_9PLAN (Nickel uptake substrate-specific transmembrane region n=8 Tax=Gimesia TaxID=1649453 RepID=A0A517ZZC5_9PLAN)

HSP 1 Score: 244 bits (623), Expect = 1.640e-71
Identity = 117/223 (52.47%), Postives = 154/223 (69.06%), Query Frame = 1
Query:    1 RAFTLDRDQSGDQLTKPPAFPDHPVRLKLDGTTPLKVKVQTPDGKPLAGIKVYPWLLNKPGEPRELNLGSLFYGNHLLEQTTDAEGITVFKWIPHWQKQQLVIWPHTEDYNNVRGTYHPATGKGLLTMELDQLVPISGQVRQADGTPAKGITVTAVGDGYQADTFRESVTTDDDGRYSLKVSPYMVYLVVAGNQTQASTPRTDFAVMPEQPVTDLDFKLRPAT 669
            R++ L R+Q GDQ  K P  PDHP+RL LDG  PL +KV    GKPL G++V PW LNK G+PR++NL S FY  +L++  TD  G+  F WIPHWQ+ ++ +WP    Y ++R  Y P   KG LTM L +LVP+SG+V   DG+PA GI ++A G+GY  D+FR + TTDD GRY+++  P MVYLV AGNQ  A+ P+T FA+ P+QP T LDF+LRPAT
Sbjct:  207 RSYELSREQYGDQQAKRPEVPDHPIRLTLDGAQPLSIKVVDSAGKPLPGVEVAPWYLNKEGQPRDVNL-SFFY--NLIQAKTDQSGMVNFDWIPHWQQARITMWPRGNGYAHLRTMYDPEKDKGKLTMRLQKLVPLSGKVSLPDGSPAAGIPISASGEGYMIDSFRGATTTDDQGRYTIEAPPGMVYLVTAGNQKWAAAPQTGFALQPDQPRTSLDFQLRPAT 426          
BLAST of mRNA_M-pyrifera_M_contig101145.243.1 vs. uniprot
Match: A0A6I6AAX9_9PLAN (Uncharacterized protein n=1 Tax=Gimesia benthica TaxID=2608982 RepID=A0A6I6AAX9_9PLAN)

HSP 1 Score: 239 bits (610), Expect = 1.120e-69
Identity = 115/223 (51.57%), Postives = 151/223 (67.71%), Query Frame = 1
Query:    1 RAFTLDRDQSGDQLTKPPAFPDHPVRLKLDGTTPLKVKVQTPDGKPLAGIKVYPWLLNKPGEPRELNLGSLFYGNHLLEQTTDAEGITVFKWIPHWQKQQLVIWPHTEDYNNVRGTYHPATGKGLLTMELDQLVPISGQVRQADGTPAKGITVTAVGDGYQADTFRESVTTDDDGRYSLKVSPYMVYLVVAGNQTQASTPRTDFAVMPEQPVTDLDFKLRPAT 669
            R++ L R+Q GDQ  K P  P+HP+RL LDGT PL +KV    GKPL G+ V PW L K G+PR++NL S FY   L++  TD  G   F WIPHWQ+  + +WP  + Y ++R  Y P   KG LTM L +LVP+SG+V   DG+PA GI ++A G+GY  D+FR + TTDD G Y+++ +P MVYLV AGN+  A+ P+T FA+ P+QP T LDFKLRPAT
Sbjct:  207 RSYELSREQYGDQQAKRPEVPNHPIRLTLDGTQPLSIKVVDTAGKPLPGVNVAPWYLKKEGQPRDVNL-SFFY--KLIQAETDQSGTVNFDWIPHWQQTPITMWPREKGYAHLRTMYDPEKDKGKLTMRLQKLVPLSGKVSLPDGSPAAGIPISASGEGYMIDSFRGTTTTDDQGHYTIEAAPNMVYLVTAGNEKWAAAPQTGFALRPDQPRTSLDFKLRPAT 426          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101145.243.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A517PG46_9PLAN4.830e-154100.00Nickel uptake substrate-specific transmembrane reg... [more]
A0A518FGM5_9PLAN3.260e-11375.78Nickel uptake substrate-specific transmembrane reg... [more]
A0A2E2C7R1_9PLAN1.500e-10973.99Thioredoxin domain-containing protein n=5 Tax=Plan... [more]
A0A517R868_9PLAN2.350e-7956.50Nickel uptake substrate-specific transmembrane reg... [more]
A0A517V664_9PLAN1.930e-7856.95Nickel uptake substrate-specific transmembrane reg... [more]
A0A518I4R9_9PLAN4.770e-7653.36Nickel uptake substrate-specific transmembrane reg... [more]
A0A517X3Q6_9PLAN7.380e-7654.71Nickel uptake substrate-specific transmembrane reg... [more]
A0A2E2C936_9PLAN1.340e-7556.05Uncharacterized protein n=4 Tax=Planctomycetaceae ... [more]
A0A517ZZC5_9PLAN1.640e-7152.47Nickel uptake substrate-specific transmembrane reg... [more]
A0A6I6AAX9_9PLAN1.120e-6951.57Uncharacterized protein n=1 Tax=Gimesia benthica T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101145contigM-pyrifera_M_contig101145:3..671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score157.9
Seed ortholog evalue5.4e-36
Seed eggNOG ortholog243090.RB1936
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Peptidase M56
EggNOG OGs2J28Y@203682,COG0526@1,COG0526@2
COG Functional cat.CO
Best tax levelPlanctomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size669
Cds size669
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815509.0427241-CDS-M-pyrifera_M_contig101145:2..6711622815509.0427241-CDS-M-pyrifera_M_contig101145:2..671Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101145 3..671 +
1692277443.4798613-CDS-M-pyrifera_M_contig101145:2..6711692277443.4798613-CDS-M-pyrifera_M_contig101145:2..671Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101145 3..671 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101145.243.1prot_M-pyrifera_M_contig101145.243.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101145 3..671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101145.243.1

>prot_M-pyrifera_M_contig101145.243.1 ID=prot_M-pyrifera_M_contig101145.243.1|Name=mRNA_M-pyrifera_M_contig101145.243.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=223bp
RAFTLDRDQSGDQLTKPPAFPDHPVRLKLDGTTPLKVKVQTPDGKPLAGI
KVYPWLLNKPGEPRELNLGSLFYGNHLLEQTTDAEGITVFKWIPHWQKQQ
LVIWPHTEDYNNVRGTYHPATGKGLLTMELDQLVPISGQVRQADGTPAKG
ITVTAVGDGYQADTFRESVTTDDDGRYSLKVSPYMVYLVVAGNQTQASTP
RTDFAVMPEQPVTDLDFKLRPAT
back to top

mRNA from alignment at M-pyrifera_M_contig101145:3..671+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101145.243.1 ID=mRNA_M-pyrifera_M_contig101145.243.1|Name=mRNA_M-pyrifera_M_contig101145.243.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=669bp|location=Sequence derived from alignment at M-pyrifera_M_contig101145:3..671+ (Macrocystis pyrifera P11B4 male)
CGAGCTTTTACGCTGGATCGGGATCAGTCCGGCGATCAACTTACAAAACC TCCCGCATTTCCCGATCATCCGGTCCGCCTCAAACTGGATGGCACCACTC CACTCAAGGTTAAAGTTCAGACACCCGACGGCAAGCCCCTGGCAGGTATC AAAGTTTATCCCTGGCTTCTCAACAAGCCGGGAGAGCCACGGGAACTGAA TCTGGGTTCTCTCTTCTACGGCAACCATCTGCTCGAACAGACAACCGATG CCGAGGGGATTACCGTTTTCAAATGGATTCCCCATTGGCAGAAACAGCAA CTGGTCATCTGGCCTCATACCGAAGACTATAACAACGTAAGAGGGACCTA CCACCCTGCGACAGGCAAGGGATTGTTGACCATGGAACTCGATCAACTGG TTCCCATCTCGGGGCAGGTTCGTCAGGCAGATGGTACTCCTGCCAAGGGA ATCACAGTGACTGCAGTCGGAGACGGATATCAGGCCGATACCTTCCGTGA ATCCGTCACAACGGACGATGACGGACGCTATTCACTCAAAGTTTCCCCCT ACATGGTTTATCTGGTCGTGGCAGGCAATCAGACACAGGCGTCAACCCCG CGGACTGACTTCGCGGTGATGCCAGAACAACCGGTGACCGACCTGGATTT CAAACTCCGTCCCGCGACA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig101145:3..671+

>mRNA_M-pyrifera_M_contig101145.243.1 ID=mRNA_M-pyrifera_M_contig101145.243.1|Name=mRNA_M-pyrifera_M_contig101145.243.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1338bp|location=Sequence derived from alignment at M-pyrifera_M_contig101145:3..671+ (Macrocystis pyrifera P11B4 male)
CGAGCTTTTACGCTGGATCGGGATCAGTCCGGCGATCAACTTACAAAACC
TCCCGCATTTCCCGATCATCCGGTCCGCCTCAAACTGGATGGCACCACTC
CACTCAAGGTTAAAGTTCAGACACCCGACGGCAAGCCCCTGGCAGGTATC
AAAGTTTATCCCTGGCTTCTCAACAAGCCGGGAGAGCCACGGGAACTGAA
TCTGGGTTCTCTCTTCTACGGCAACCATCTGCTCGAACAGACAACCGATG
CCGAGGGGATTACCGTTTTCAAATGGATTCCCCATTGGCAGAAACAGCAA
CTGGTCATCTGGCCTCATACCGAAGACTATAACAACGTAAGAGGGACCTA
CCACCCTGCGACAGGCAAGGGATTGTTGACCATGGAACTCGATCAACTGG
TTCCCATCTCGGGGCAGGTTCGTCAGGCAGATGGTACTCCTGCCAAGGGA
ATCACAGTGACTGCAGTCGGAGACGGATATCAGGCCGATACCTTCCGTGA
ATCCGTCACAACGGACGATGACGGACGCTATTCACTCAAAGTTTCCCCCT
ACATGGTTTATCTGGTCGTGGCAGGCAATCAGACACAGGCGTCAACCCCG
CGGACTGACTTCGCGGTGATGCCAGAACAACCGGTGACCGACCTGGATTT
CAAACTCCGTCCCGCGACACGAGCTTTTACGCTGGATCGGGATCAGTCCG
GCGATCAACTTACAAAACCTCCCGCATTTCCCGATCATCCGGTCCGCCTC
AAACTGGATGGCACCACTCCACTCAAGGTTAAAGTTCAGACACCCGACGG
CAAGCCCCTGGCAGGTATCAAAGTTTATCCCTGGCTTCTCAACAAGCCGG
GAGAGCCACGGGAACTGAATCTGGGTTCTCTCTTCTACGGCAACCATCTG
CTCGAACAGACAACCGATGCCGAGGGGATTACCGTTTTCAAATGGATTCC
CCATTGGCAGAAACAGCAACTGGTCATCTGGCCTCATACCGAAGACTATA
ACAACGTAAGAGGGACCTACCACCCTGCGACAGGCAAGGGATTGTTGACC
ATGGAACTCGATCAACTGGTTCCCATCTCGGGGCAGGTTCGTCAGGCAGA
TGGTACTCCTGCCAAGGGAATCACAGTGACTGCAGTCGGAGACGGATATC
AGGCCGATACCTTCCGTGAATCCGTCACAACGGACGATGACGGACGCTAT
TCACTCAAAGTTTCCCCCTACATGGTTTATCTGGTCGTGGCAGGCAATCA
GACACAGGCGTCAACCCCGCGGACTGACTTCGCGGTGATGCCAGAACAAC
CGGTGACCGACCTGGATTTCAAACTCCGTCCCGCGACA
back to top