mRNA_M-pyrifera_M_contig111640.2424.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111640.2424.1
Unique NamemRNA_M-pyrifera_M_contig111640.2424.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111640.2424.1 vs. uniprot
Match: A0A5P1F5Q7_ASPOF (JmjC domain-containing protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1F5Q7_ASPOF)

HSP 1 Score: 96.3 bits (238), Expect = 1.140e-23
Identity = 46/94 (48.94%), Postives = 59/94 (62.77%), Query Frame = 1
Query:   19 VKEEGSTIPWIAVDPSSEVSVEM------FKDYGKNCSPLEVHVREGEVLYLPSMWYHQVAQREDEEGKVIAMNWWYDMAFDIKYAYFAFLEAL 282
            ++E    +PW +VDP  E   EM      F  Y     P +  VR GE+LYLPSMW+H V Q  DE G+ IA+N+WYDM FDIKYAYF FL+++
Sbjct:    1 MEEPEREVPWCSVDPYPETEEEMARQRREFPMYFDGPEPFKCTVRAGEMLYLPSMWFHHVRQSPDENGRCIAVNYWYDMQFDIKYAYFNFLQSI 94          
BLAST of mRNA_M-pyrifera_M_contig111640.2424.1 vs. uniprot
Match: A0A7N0SWW6_KALFE (JmjC domain-containing protein n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0SWW6_KALFE)

HSP 1 Score: 101 bits (252), Expect = 1.510e-23
Identity = 48/99 (48.48%), Postives = 65/99 (65.66%), Query Frame = 1
Query:    4 RKFAL-VKEEGSTIPWIAVDPSSEVSVE-----MFKDYGKNCSPLEVHVREGEVLYLPSMWYHQVAQREDEEGKVIAMNWWYDMAFDIKYAYFAFLEAL 282
            RKF L + E    +PW +V+P   + V+      F  Y K   P EV V+ GE+LYLPSMW+H V Q  D +G+ IA+N+WYDM FDIKYAYF+FL+++
Sbjct:  232 RKFTLELDEPARDVPWCSVNPHPSLEVKDSEVSQFPMYFKGPKPFEVTVKAGEILYLPSMWFHHVRQSPDSQGRTIAINYWYDMQFDIKYAYFSFLQSM 330          
BLAST of mRNA_M-pyrifera_M_contig111640.2424.1 vs. uniprot
Match: A0A1Y1HU72_KLENI (Jmjc domain-containing protein 7 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HU72_KLENI)

HSP 1 Score: 98.2 bits (243), Expect = 1.580e-22
Identity = 42/84 (50.00%), Postives = 59/84 (70.24%), Query Frame = 1
Query:   34 STIPWIAVDPSSEVSVEMFKDYGKNCSPLEVHVREGEVLYLPSMWYHQVAQREDEEGKVIAMNWWYDMAFDIKYAYFAFLEALS 285
            ST+PW++VDP    + + F  Y +   PL   V+ GE+LYLPSM+YH V Q+ DE+G+ IA+N+WYDM FD+KYAY+   E L+
Sbjct:  236 STVPWVSVDPDDPGTSDRFPLYDQGPPPLRCVVKAGELLYLPSMYYHHVKQKPDEQGRTIAINFWYDMEFDVKYAYYKLAEKLT 319          
BLAST of mRNA_M-pyrifera_M_contig111640.2424.1 vs. uniprot
Match: F4PQW0_CAVFA (Transcription factor jumonji n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PQW0_CAVFA)

HSP 1 Score: 95.9 bits (237), Expect = 1.860e-21
Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 1
Query:   13 ALVKEEGSTIPWIAVDPSSEVSVEMFKDYG--KNCSPLEVHVREGEVLYLPSMWYHQVAQR-EDEEGKVIAMNWWYDMAFDIKYAYFAFLE 276
            A++ E+ + IPWI VDP+  +     K YG  + C PL V V+EGE+LYLPS++YH+VAQR +D+E K IA+N+W+DM +   Y Y+ FL 
Sbjct:  262 AVLDEDQTPIPWIPVDPTHPIEANRAKGYGMVERCHPLHVEVKEGEILYLPSLYYHRVAQRGDDKEHKTIAINYWFDMKYGPNYVYYQFLR 352          
BLAST of mRNA_M-pyrifera_M_contig111640.2424.1 vs. uniprot
Match: A0A7J7MV76_9MAGN (JmjC domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7MV76_9MAGN)

HSP 1 Score: 91.3 bits (225), Expect = 2.470e-21
Identity = 45/100 (45.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:    1 TRKFALVKEEGST-IPWIAVDP-----SSEVSVEMFKDYGKNCSPLEVHVREGEVLYLPSMWYHQVAQREDEEGKVIAMNWWYDMAFDIKYAYFAFLEAL 282
            T++F L  E+    +PW +V+P     S +  +  F  Y     P E  V+ GE+LYLPSMW+H V Q  D+ G  IA+N+WYDM FDIKYAYF FL+++
Sbjct:   17 TKEFTLELEKPLRYVPWCSVNPYPTSDSKDREMSSFPLYFNGPKPFECTVKAGEILYLPSMWFHYVRQSPDDRGLAIAVNYWYDMQFDIKYAYFNFLQSI 116          
BLAST of mRNA_M-pyrifera_M_contig111640.2424.1 vs. uniprot
Match: A0A0E9NKW2_SAICN (JmjC domain-containing protein n=2 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=A0A0E9NKW2_SAICN)

HSP 1 Score: 94.7 bits (234), Expect = 2.530e-21
Identity = 45/94 (47.87%), Postives = 63/94 (67.02%), Query Frame = 1
Query:    7 KFALVKEEGS-TIPWIAVDPSSEVSVEMFKDYGKNCSPLEVHVREGEVLYLPSMWYHQVAQREDEEGKVIAMNWWYDMAFDIK-YAYFAFLEAL 282
            K A+V +    +IPW+ VDP++      F ++   C PL V ++ GEVLYLP++W+H V QR DEEGKVIA+NWWYDM +    YA F F++A+
Sbjct:  207 KLAVVPDSPPLSIPWLCVDPTAPEQSPTFSEF---CRPLRVDLQPGEVLYLPALWFHHVGQRSDEEGKVIAVNWWYDMCYSQPLYAQFNFMKAI 297          
BLAST of mRNA_M-pyrifera_M_contig111640.2424.1 vs. uniprot
Match: UPI001C271688 (bifunctional peptidase and (3S)-lysyl hydroxylase JMJD7 n=2 Tax=Salvia TaxID=21880 RepID=UPI001C271688)

HSP 1 Score: 95.5 bits (236), Expect = 2.960e-21
Identity = 48/100 (48.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:    7 KFALVKEE-GSTIPWIAVDP-----SSEVSVEMFKDYGKNCSPLEVHVREGEVLYLPSMWYHQVAQREDEEGKVIAMNWWYDMAFDIKYAYFAFLEALSS 288
            +F+L  E+  S +PW +VDP          +E F  Y     P EV V+ GE+LYLPSMW+H V Q  D+ G  IA+N+WYDM FDIKYAYF FL+++ S
Sbjct:  231 EFSLELEDPNSKVPWCSVDPYPLPQDKRREMEKFPLYFNGPKPFEVSVKAGEMLYLPSMWFHHVRQSLDDTGITIAINYWYDMQFDIKYAYFNFLQSIPS 330          
BLAST of mRNA_M-pyrifera_M_contig111640.2424.1 vs. uniprot
Match: A0A6I9SY18_SESIN (jmjC domain-containing protein 7 n=1 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9SY18_SESIN)

HSP 1 Score: 95.5 bits (236), Expect = 3.130e-21
Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 1
Query:   40 IPWIAVDP-----SSEVSVEMFKDYGKNCSPLEVHVREGEVLYLPSMWYHQVAQREDEEGKVIAMNWWYDMAFDIKYAYFAFLEAL 282
            +PW +VDP       +  VE F  Y     P EV V+ GE+LYLPSMW+H V Q  DE G  IA+N+WYDM FDIKYAYF FL+++
Sbjct:  242 VPWCSVDPYPLPEEKQREVEKFPLYFNGPKPFEVTVKAGEMLYLPSMWFHHVLQSPDETGLTIAINYWYDMQFDIKYAYFNFLQSI 327          
BLAST of mRNA_M-pyrifera_M_contig111640.2424.1 vs. uniprot
Match: UPI00015CC4FF (jmjC domain-containing protein 7 isoform X1 n=3 Tax=Vitis TaxID=3603 RepID=UPI00015CC4FF)

HSP 1 Score: 95.1 bits (235), Expect = 3.910e-21
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   40 IPWIAVDP-----SSEVSVEMFKDYGKNCSPLEVHVREGEVLYLPSMWYHQVAQREDEEGKVIAMNWWYDMAFDIKYAYFAFLEALS 285
            +PW +V+P     + +  +  F  Y     PLE  V+ GE+LYLPSMW+H V Q  D  G+ IA+N+WYDM FDIKYAYF FL+++S
Sbjct:  241 VPWCSVNPYPSPETKDAEISQFPLYFNGPKPLECTVKAGEILYLPSMWFHHVKQTPDSSGRTIAINYWYDMQFDIKYAYFNFLQSIS 327          
BLAST of mRNA_M-pyrifera_M_contig111640.2424.1 vs. uniprot
Match: A0A6A6KBK9_HEVBR (JmjC domain-containing protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6KBK9_HEVBR)

HSP 1 Score: 91.3 bits (225), Expect = 6.340e-21
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 1
Query:   40 IPWIAVDP-----SSEVSVEMFKDYGKNCSPLEVHVREGEVLYLPSMWYHQVAQREDEEGKVIAMNWWYDMAFDIKYAYFAFLEAL 282
            +PW +V+P     + E  +  F  Y     P E  V  GEVLYLPSMW+H V Q  D+EG  IA+N+WYDM FD+KYAYF FL+++
Sbjct:   60 VPWCSVNPYPSPEAKESEMAKFPLYFNGPKPFECTVNAGEVLYLPSMWFHHVRQSSDDEGCTIAINYWYDMQFDVKYAYFNFLQSI 145          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111640.2424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5P1F5Q7_ASPOF1.140e-2348.94JmjC domain-containing protein n=2 Tax=Asparagus o... [more]
A0A7N0SWW6_KALFE1.510e-2348.48JmjC domain-containing protein n=2 Tax=Kalanchoe f... [more]
A0A1Y1HU72_KLENI1.580e-2250.00Jmjc domain-containing protein 7 n=1 Tax=Klebsormi... [more]
F4PQW0_CAVFA1.860e-2148.35Transcription factor jumonji n=1 Tax=Cavenderia fa... [more]
A0A7J7MV76_9MAGN2.470e-2145.00JmjC domain-containing protein n=1 Tax=Kingdonia u... [more]
A0A0E9NKW2_SAICN2.530e-2147.87JmjC domain-containing protein n=2 Tax=Saitoella c... [more]
UPI001C2716882.960e-2148.00bifunctional peptidase and (3S)-lysyl hydroxylase ... [more]
A0A6I9SY18_SESIN3.130e-2152.33jmjC domain-containing protein 7 n=1 Tax=Sesamum i... [more]
UPI00015CC4FF3.910e-2148.28jmjC domain-containing protein 7 isoform X1 n=3 Ta... [more]
A0A6A6KBK9_HEVBR6.340e-2148.84JmjC domain-containing protein n=1 Tax=Hevea brasi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111640contigM-pyrifera_M_contig111640:97..390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score94.4
Seed ortholog evalue3.2e-17
Seed eggNOG ortholog29760.VIT_02s0087g00950.t01
KEGG koko:K19219
Hectar predicted targeting categoryother localisation
EggNOG free text desc.JmjC domain-containing protein
EggNOG OGs37PCE@33090,3G7RK@35493,COG1226@1,KOG2508@2759,KOG4197@1,KOG4197@2759
COG Functional cat.I
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons1
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815629.0401397-CDS-M-pyrifera_M_contig111640:96..3901622815629.0401397-CDS-M-pyrifera_M_contig111640:96..390Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111640 97..390 +
1692277495.1771019-CDS-M-pyrifera_M_contig111640:96..3901692277495.1771019-CDS-M-pyrifera_M_contig111640:96..390Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111640 97..390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111640.2424.1prot_M-pyrifera_M_contig111640.2424.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111640 97..390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111640.2424.1

>prot_M-pyrifera_M_contig111640.2424.1 ID=prot_M-pyrifera_M_contig111640.2424.1|Name=mRNA_M-pyrifera_M_contig111640.2424.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=98bp
TRKFALVKEEGSTIPWIAVDPSSEVSVEMFKDYGKNCSPLEVHVREGEVL
YLPSMWYHQVAQREDEEGKVIAMNWWYDMAFDIKYAYFAFLEALSSQ*
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mRNA from alignment at M-pyrifera_M_contig111640:97..390+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111640.2424.1 ID=mRNA_M-pyrifera_M_contig111640.2424.1|Name=mRNA_M-pyrifera_M_contig111640.2424.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=294bp|location=Sequence derived from alignment at M-pyrifera_M_contig111640:97..390+ (Macrocystis pyrifera P11B4 male)
ACTAGGAAATTCGCACTGGTGAAGGAAGAGGGTAGCACAATTCCGTGGAT AGCAGTGGATCCCAGCTCAGAGGTATCTGTAGAGATGTTCAAGGACTACG GTAAGAACTGCAGTCCGTTGGAGGTGCACGTGAGGGAGGGAGAAGTGCTC TACCTGCCCTCCATGTGGTATCACCAAGTGGCCCAGCGCGAGGACGAAGA GGGAAAGGTCATTGCCATGAACTGGTGGTACGACATGGCTTTCGACATCA AGTACGCTTACTTTGCCTTTCTTGAGGCCTTGAGCAGCCAGTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111640:97..390+

>mRNA_M-pyrifera_M_contig111640.2424.1 ID=mRNA_M-pyrifera_M_contig111640.2424.1|Name=mRNA_M-pyrifera_M_contig111640.2424.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=588bp|location=Sequence derived from alignment at M-pyrifera_M_contig111640:97..390+ (Macrocystis pyrifera P11B4 male)
ACTAGGAAATTCGCACTGGTGAAGGAAGAGGGTAGCACAATTCCGTGGAT
AGCAGTGGATCCCAGCTCAGAGGTATCTGTAGAGATGTTCAAGGACTACG
GTAAGAACTGCAGTCCGTTGGAGGTGCACGTGAGGGAGGGAGAAGTGCTC
TACCTGCCCTCCATGTGGTATCACCAAGTGGCCCAGCGCGAGGACGAAGA
GGGAAAGGTCATTGCCATGAACTGGTGGTACGACATGGCTTTCGACATCA
AGTACGCTTACTTTGCCTTTCTTGAGGCCTTGAGCAGCCAGTGAACTAGG
AAATTCGCACTGGTGAAGGAAGAGGGTAGCACAATTCCGTGGATAGCAGT
GGATCCCAGCTCAGAGGTATCTGTAGAGATGTTCAAGGACTACGGTAAGA
ACTGCAGTCCGTTGGAGGTGCACGTGAGGGAGGGAGAAGTGCTCTACCTG
CCCTCCATGTGGTATCACCAAGTGGCCCAGCGCGAGGACGAAGAGGGAAA
GGTCATTGCCATGAACTGGTGGTACGACATGGCTTTCGACATCAAGTACG
CTTACTTTGCCTTTCTTGAGGCCTTGAGCAGCCAGTGA
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