mRNA_M-pyrifera_M_contig111465.2381.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig111465.2381.1
Unique NamemRNA_M-pyrifera_M_contig111465.2381.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig111465.2381.1 vs. uniprot
Match: A0A0L0G2Z3_9EUKA (PNPLA domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0G2Z3_9EUKA)

HSP 1 Score: 115 bits (288), Expect = 1.560e-27
Identity = 68/154 (44.16%), Postives = 89/154 (57.79%), Query Frame = 1
Query:    1 QLHHLHRHAHFSGASGGALAAAALAVDVNLDDIKEFAIACAQHCHAHW--SHAFRLRQYVVDCVDWVQQQEPR----LASRANGRLHVAVTTLPFMRRRRYSHYRDDSHLRSVLLASCCMSPLGGLPFMLDGALVFDGGITDFQPTLHAQAVTV 444
            Q + L + A F G+S GAL AAA+ VDV+   +KE+ + C +         +AFRLR+Y+VD VD  Q+  P+       +   R+ VAVT LP     RYS Y D  H + VLLASC   P+ G PF+LDG LV DGG+ DFQP L    +TV
Sbjct:   45 QRYELDKKAKFVGSSAGALTAAAILVDVDFISLKEYTLGCIRDVREPVLNMNAFRLRKYIVDIVD--QKLGPKEFKHYQQQLEERMEVAVTALPGCHGFRYSKYTDYDHFKDVLLASCTAPPIAGFPFVLDGTLVADGGLADFQPLLDENTITV 196          
BLAST of mRNA_M-pyrifera_M_contig111465.2381.1 vs. uniprot
Match: A0A7S0TN48_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TN48_HEMAN)

HSP 1 Score: 105 bits (262), Expect = 6.360e-25
Identity = 53/130 (40.77%), Postives = 78/130 (60.00%), Query Frame = 1
Query:   25 AHFSGASGGALAAAALAVDVNLDDIKEFAIACAQHCHAHWSHAFRLRQYVVDCVDWVQQQEPRLASRA-NGRLHVAVTTLPFMRRRRYSHYRDDSHLRSVLLASCCMSPLGGLPFMLDGALVFDGGITDF 411
            A F G+S G++ +A L + ++ D IKE  +      H     AF L+ Y+ + +D      P  A      R  +++TTLPF+R +R + YRD++HLR  LLASCCM+P  G+PF LDG  VFDGG++D+
Sbjct:   60 ARFMGSSAGSMVSAGLGLGLDFDKIKEMQLGMVDRTHGRIGAAFNLKGYLQEIMD---DMLPHNAHDVLQNRCEISITTLPFLRNKRVNIYRDNTHLRQALLASCCMTPFAGMPFRLDGEFVFDGGLSDW 186          
BLAST of mRNA_M-pyrifera_M_contig111465.2381.1 vs. uniprot
Match: A0A0L0FQH2_9EUKA (PNPLA domain-containing protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FQH2_9EUKA)

HSP 1 Score: 99.4 bits (246), Expect = 1.610e-21
Identity = 57/142 (40.14%), Postives = 76/142 (53.52%), Query Frame = 1
Query:   25 AHFSGASGGALAAAALAVDVNLDDIKEFAIACAQHCHAHWSHAFRLRQYVVDCVDWVQQQEPRLASRANGRLHV--AVTTLPFMRRRRYSHYRDDSHLRSVLLASCCMSPLGGLPFMLDGALVFDGGITDFQPTLHAQAVTV 444
            A F+GAS GALA   L +  ++  +KE  +       A+  +   +R Y+   +D V  +E  L  +     H   AVT LP     RYS  RD  H + VLLASCC  P+ G PFMLDG LV DGGI DFQP +   ++T+
Sbjct:   91 ARFAGASAGALAGVCLVIGSDMQYVKEVCMENLDEVRANPFNGLCIRYYLNRAIDKVVGEERYLKHKEALDAHAESAVTILPGCHGTRYSETRDYDHFKKVLLASCCAPPIAGFPFMLDGKLVIDGGIADFQPLVDDNSITI 232          
BLAST of mRNA_M-pyrifera_M_contig111465.2381.1 vs. uniprot
Match: A0A0L0FJ92_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FJ92_9EUKA)

HSP 1 Score: 93.6 bits (231), Expect = 2.790e-21
Identity = 55/144 (38.19%), Postives = 80/144 (55.56%), Query Frame = 1
Query:   19 RHAHFSGASGGALAAAALAVDVNLDDIKEFAIACAQHCHAHWSHAFRLRQYVVDCVDWVQQQEPRLA--SRANGRLHVAVTTLPFMRRRRYSHYRDDSHLRSVLLASCCMSPLGGLPFMLDGALVFDGGITDFQPTLHAQAVTV 444
            + A F G+S GAL AAA+ +DV+L  +K+                F+LR+Y  D  D +      L+  S+ + +L V VT LP     RYS YR+  H + V+LASC  SP+ G PF+LDG +  DGG++DFQP +    V++
Sbjct:   36 KRAKFVGSSAGALTAAAIILDVDLIRLKDT--------------PFQLRKYKTDIADEMLGPARFLSNQSKLSEQLEVVVTVLPRCHTLRYSKYRNYEHFKDVMLASCTASPIAGFPFLLDGQICADGGLSDFQPLIDENTVSI 165          
BLAST of mRNA_M-pyrifera_M_contig111465.2381.1 vs. uniprot
Match: A0A0S4J309_BODSA (Transmembrane protein, putative n=1 Tax=Bodo saltans TaxID=75058 RepID=A0A0S4J309_BODSA)

HSP 1 Score: 97.1 bits (240), Expect = 9.600e-21
Identity = 56/140 (40.00%), Postives = 82/140 (58.57%), Query Frame = 1
Query:   31 FSGASGGALAAAALAVDVNL-DDIKEFAIACAQHCHAHWSHAFRLRQYVVDCV--------DWVQQQEPRLASRANGRLHVAVTTLPFMRRRRYSHYRDDSHLRSVLLASCCMSPLGGLPFML--DGALVFDGGITDFQP 417
            F G+S G+LAAA+LA   ++ DD+K+FA+ C +H  +   H   +R Y+V  +        +  +QQE  LA    GRL V  TTLPF+ R+  + + D + +   L+ASCC++P+ GLPF L   G  V DGG+  FQP
Sbjct:   73 FCGSSAGSLAAASLASGCHMHDDMKDFAVLCGEHYRSSLWHFMCMRDYLVASIHRFGDRMMETPEQQERTLAGMRGGRLEVYTTTLPFLTRKCMTEFDDLADIEESLIASCCLTPVVGLPFPLRKTGEWVCDGGVRSFQP 212          
BLAST of mRNA_M-pyrifera_M_contig111465.2381.1 vs. uniprot
Match: A0A0L0FLC9_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FLC9_9EUKA)

HSP 1 Score: 82.8 bits (203), Expect = 1.470e-17
Identity = 42/102 (41.18%), Postives = 60/102 (58.82%), Query Frame = 1
Query:  145 SHAFRLRQYVVDCVDWVQQQEPRLA--SRANGRLHVAVTTLPFMRRRRYSHYRDDSHLRSVLLASCCMSPLGGLPFMLDGALVFDGGITDFQPTLHAQAVTV 444
            S  F+LR+Y  D  D +      L+  S+ + +L V VT LP     RYS YR+  H + V+LASC  SP+ G PF+LDG +  DGG++DFQP +    V++
Sbjct:   16 STPFQLRKYKTDIADEMLGPARFLSNQSKLSEQLEVVVTVLPRCHTLRYSKYRNYEHFKDVMLASCTASPIAGFPFLLDGQICADGGLSDFQPLIDENTVSI 117          
BLAST of mRNA_M-pyrifera_M_contig111465.2381.1 vs. uniprot
Match: A0A484DSX1_BRELC (PNPLA domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DSX1_BRELC)

HSP 1 Score: 86.3 bits (212), Expect = 5.760e-17
Identity = 49/145 (33.79%), Postives = 75/145 (51.72%), Query Frame = 1
Query:   13 LHRHAHFSGASGGALAAAALAVDVNLDDIKEFAIACA-QHCHAHWSHAFRLRQYVVDCVDWVQQQEPRLASRANGRLHVAVTTLPFMRRRRYSHYRDDSHLRSVLLASCCMSPLGGLPFMLDGALVFDGGITDFQPTLHAQAVTV 444
            L + A   G S GAL A  LA+  +   I+++ + C     H   +  FR+R Y+ D +    +         + +L +  T+L  M+ RR + +    HL   LLASCC +P+ GLPF L+G  V DGG+ DFQP   ++ VT+
Sbjct:   45 LEKDARLIGCSAGALTATGLALHCDFVAIRDYVLQCIIPKAHVSLASYFRVRTYLRDTLLCHCRTHEFETLNKSQQLTIVYTSLTSMKSRRVTTFESTEHLTETLLASCCATPIAGLPFKLNGEWVMDGGMLDFQPVYDSKTVTI 189          
BLAST of mRNA_M-pyrifera_M_contig111465.2381.1 vs. uniprot
Match: A0A3M6VCZ5_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCZ5_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 8.090e-17
Identity = 48/145 (33.10%), Postives = 78/145 (53.79%), Query Frame = 1
Query:   13 LHRHAHFSGASGGALAAAALAVDVNLDDIKEFAIA-CAQHCHAHWSHAFRLRQYVVDCVDWVQQQEPRLASRANGRLHVAVTTLPFMRRRRYSHYRDDSHLRSVLLASCCMSPLGGLPFMLDGALVFDGGITDFQPTLHAQAVTV 444
            L + A   G S GALAA  LA+  N D I++F +     + H   +  FR+R ++++ ++   +        A+ +L V  T+L  +  RR++ +     L   L+ASCC +P+ G+PF L+G  V DGG+ DFQP    + VT+
Sbjct:  474 LEKDARLIGCSAGALAATGLALHCNFDAIRDFVLTDVIPNAHVFPAGYFRVRTFLLNTLEAEGKLHEYEKLNASQQLTVVYTSLSALTSRRHTKFESKQQLTDSLMASCCATPIAGMPFKLNGEWVMDGGMLDFQPVFDDKTVTI 618          
BLAST of mRNA_M-pyrifera_M_contig111465.2381.1 vs. uniprot
Match: A0A7S3PS66_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PS66_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.710e-16
Identity = 55/160 (34.38%), Postives = 83/160 (51.88%), Query Frame = 1
Query:    1 QLHHLHRHAHF---SGASGGALAAAALAVDVNLDDIKEFAIACAQHCHAHWS-HAFRLRQYVVDCVDWVQQQEPRLASRAN---------GRLHVAVTTLPFMRRRRYSHYRDDSHLRSVLLASCCMSPLGGLPFMLD--------GALVFDGGITDFQP 417
            Q + LH   H    +G+SGG+L +A LAV+ ++D IK+F + C   C  + S + F++R+YV    +   +   +     N         GRL V+VT LP M+    + + +   L S +L SC MSPL GLPF ++        G  VFDGG+ + QP
Sbjct:   23 QKYGLHEETHCVRCTGSSGGSLVSACLAVNADIDLIKDFFLDCVADCKTNPSVNMFKMREYVKGAFNIASESYEKQHKHRNFHEHENVKKGRLGVSVTLLPSMKNAILTEFSNQQELESAILGSCTMSPLAGLPFRMNKPDDPNVHGKWVFDGGMANIQP 182          
BLAST of mRNA_M-pyrifera_M_contig111465.2381.1 vs. uniprot
Match: A0A3F2S4I5_9STRA (PNPLA domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S4I5_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 3.410e-16
Identity = 50/149 (33.56%), Postives = 74/149 (49.66%), Query Frame = 1
Query:    1 QLHHLHRHAHFSGASGGALAAAALAVDVNLDDIKEFAIA-CAQHCHAHWSHAFRLRQYVVDCVDWVQQQEPRLASRANGRLHVAVTTLPFMRRRRYSHYRDDSHLRSVLLASCCMSPLGGLPFMLDGALVFDGGITDFQPTLHAQAVTV 444
            Q   L R+    G S GALAA  LA+  + D I++  +       H   S     R+Y++D +    +        A+ +L V  T+L  ++ RR + +   +HL   L ASCC +P+ G+PF L+G  V DG I DFQP    + VTV
Sbjct:   41 QQFELERNGRLIGCSAGALAATGLALQCDFDAIRDHVLKNVVPKAHGSLSGLMSTREYLMDTLHSQGRLHEYAKLNASQQLTVVYTSLSSVKSRRVTSFASKNHLEKCLKASCCATPIAGMPFRLNGEWVMDGCILDFQPVYDEKTVTV 189          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig111465.2381.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0L0G2Z3_9EUKA1.560e-2744.16PNPLA domain-containing protein n=1 Tax=Sphaerofor... [more]
A0A7S0TN48_HEMAN6.360e-2540.77Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A0L0FQH2_9EUKA1.610e-2140.14PNPLA domain-containing protein n=1 Tax=Sphaerofor... [more]
A0A0L0FJ92_9EUKA2.790e-2138.19Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A0S4J309_BODSA9.600e-2140.00Transmembrane protein, putative n=1 Tax=Bodo salta... [more]
A0A0L0FLC9_9EUKA1.470e-1741.18Uncharacterized protein n=1 Tax=Sphaeroforma arcti... [more]
A0A484DSX1_BRELC5.760e-1733.79PNPLA domain-containing protein n=1 Tax=Bremia lac... [more]
A0A3M6VCZ5_9STRA8.090e-1733.10Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
A0A7S3PS66_9STRA1.710e-1634.38Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A3F2S4I5_9STRA3.410e-1633.56PNPLA domain-containing protein n=1 Tax=Phytophtho... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig111465contigM-pyrifera_M_contig111465:3..505 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue1.6e-23
Seed eggNOG ortholog72019.SARC_04523T0
KEGG rclassRC00020,RC00037,RC00041,RC00094
KEGG koko:K16816
KEGG ReactionR02250,R02687
KEGG Pathwayko00561,ko01100,ko04714,ko04923,map00561,map01100,map04714,map04923
KEGG ModuleM00098
Hectar predicted targeting categoryother localisation
EggNOG free text desc.triglyceride catabolic process
EggNOG OGsKOG3773@1,KOG3773@2759
EC3.1.1.3
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons2
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815627.0515301-CDS-M-pyrifera_M_contig111465:2..3441622815627.0515301-CDS-M-pyrifera_M_contig111465:2..344Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111465 3..344 -
1692277494.2872412-CDS-M-pyrifera_M_contig111465:2..3441692277494.2872412-CDS-M-pyrifera_M_contig111465:2..344Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111465 3..344 -
1622815627.0628743-CDS-M-pyrifera_M_contig111465:403..5051622815627.0628743-CDS-M-pyrifera_M_contig111465:403..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111465 404..505 -
1692277494.2973986-CDS-M-pyrifera_M_contig111465:403..5051692277494.2973986-CDS-M-pyrifera_M_contig111465:403..505Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig111465 404..505 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig111465.2381.1prot_M-pyrifera_M_contig111465.2381.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig111465 3..505 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig111465.2381.1

>prot_M-pyrifera_M_contig111465.2381.1 ID=prot_M-pyrifera_M_contig111465.2381.1|Name=mRNA_M-pyrifera_M_contig111465.2381.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=148bp
QLHHLHRHAHFSGASGGALAAAALAVDVNLDDIKEFAIACAQHCHAHWSH
AFRLRQYVVDCVDWVQQQEPRLASRANGRLHVAVTTLPFMRRRRYSHYRD
DSHLRSVLLASCCMSPLGGLPFMLDGALVFDGGITDFQPTLHAQAVTV
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mRNA from alignment at M-pyrifera_M_contig111465:3..505-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig111465.2381.1 ID=mRNA_M-pyrifera_M_contig111465.2381.1|Name=mRNA_M-pyrifera_M_contig111465.2381.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=503bp|location=Sequence derived from alignment at M-pyrifera_M_contig111465:3..505- (Macrocystis pyrifera P11B4 male)
CAGTTGCATCATCTGCACCGCCATGCGCACTTCAGCGGCGCCTCTGGGGG CGCACTAGCGGCTGCCGCGCTGGCAGTTGATGTCAACCTGGACGACATCA AGGTTCGTCGCGCACCTGCCCCTCTGCTTCGCCAGTCCTCGCCTCACGCG TGTACCTACAGGAGTTTGCCATTGCGTGCGCGCAGCACTGCCACGCTCAC TGGTCGCACGCGTTCCGCCTGCGCCAGTACGTGGTCGACTGTGTCGACTG GGTACAGCAGCAAGAGCCCCGCCTCGCCTCCCGCGCCAATGGCCGTCTCC ACGTCGCCGTCACCACCCTTCCCTTCATGCGTCGTCGTCGCTACTCCCAC TACCGCGACGACAGCCACCTGCGCAGCGTGCTGCTCGCGTCCTGCTGCAT GTCCCCTCTGGGCGGTCTCCCCTTCATGCTGGACGGCGCACTGGTGTTTG ACGGCGGGATCACCGACTTCCAGCCAACACTGCACGCGCAAGCGGTCACC GTC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig111465:3..505-

>mRNA_M-pyrifera_M_contig111465.2381.1 ID=mRNA_M-pyrifera_M_contig111465.2381.1|Name=mRNA_M-pyrifera_M_contig111465.2381.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=888bp|location=Sequence derived from alignment at M-pyrifera_M_contig111465:3..505- (Macrocystis pyrifera P11B4 male)
CAGTTGCATCATCTGCACCGCCATGCGCACTTCAGCGGCGCCTCTGGGGG
CGCACTAGCGGCTGCCGCGCTGGCAGTTGATGTCAACCTGGACGACATCA
AGCAGTTGCATCATCTGCACCGCCATGCGCACTTCAGCGGCGCCTCTGGG
GGCGCACTAGCGGCTGCCGCGCTGGCAGTTGATGTCAACCTGGACGACAT
CAAGGAGTTTGCCATTGCGTGCGCGCAGCACTGCCACGCTCACTGGTCGC
ACGCGTTCCGCCTGCGCCAGTACGTGGTCGACTGTGTCGACTGGGTACAG
CAGCAAGAGCCCCGCCTCGCCTCCCGCGCCAATGGCCGTCTCCACGTCGC
CGTCACCACCCTTCCCTTCATGCGTCGTCGTCGCTACTCCCACTACCGCG
ACGACAGCCACCTGCGCAGCGTGCTGCTCGCGTCCTGCTGCATGTCCCCT
CTGGGCGGTCTCCCCTTCATGCTGGACGGCGCACTGGTGTTTGACGGCGG
GATCACCGACTTCCAGCCAACACTGCACGCGCAAGCGGTCACCGTCGAGT
TTGCCATTGCGTGCGCGCAGCACTGCCACGCTCACTGGTCGCACGCGTTC
CGCCTGCGCCAGTACGTGGTCGACTGTGTCGACTGGGTACAGCAGCAAGA
GCCCCGCCTCGCCTCCCGCGCCAATGGCCGTCTCCACGTCGCCGTCACCA
CCCTTCCCTTCATGCGTCGTCGTCGCTACTCCCACTACCGCGACGACAGC
CACCTGCGCAGCGTGCTGCTCGCGTCCTGCTGCATGTCCCCTCTGGGCGG
TCTCCCCTTCATGCTGGACGGCGCACTGGTGTTTGACGGCGGGATCACCG
ACTTCCAGCCAACACTGCACGCGCAAGCGGTCACCGTC
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