mRNA_M-pyrifera_M_contig10112.237.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig10112.237.1
Unique NamemRNA_M-pyrifera_M_contig10112.237.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig10112.237.1 vs. uniprot
Match: D7FQ53_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ53_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 1.900e-40
Identity = 66/82 (80.49%), Postives = 73/82 (89.02%), Query Frame = 1
Query:    1 MLAKQLLRQDGKGPTLRDPPRARTLLEQGCAQNHGPSCYNLTVMYKNGDDGVASDYKKYRQYREQTEKLAAQLQGVDGNKQA 246
            MLAKQLLR DGKGP  RDPPRAR LLE+GC+ NHGPSC+NLTVM K GD+GV SDYKKYR+YRE+TE LAAQLQG+DGNKQA
Sbjct:  141 MLAKQLLRHDGKGPVPRDPPRARGLLEKGCSHNHGPSCFNLTVMLKKGDEGVPSDYKKYREYREKTESLAAQLQGIDGNKQA 222          
BLAST of mRNA_M-pyrifera_M_contig10112.237.1 vs. uniprot
Match: A0A7R9UGB8_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGB8_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 5.380e-15
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 1
Query:   28 DGKGPTLRDPPRARTLLEQGCAQNHGPSCYNLTVMYKNGDDGVASDYKKYRQYREQTEKL 207
            D +    R+P  AR LLE+GC Q HG SC+NL VMYKNGDDGV +D  K+++Y+++TE+L
Sbjct:  222 DDRSSVPRNPEEARKLLERGCRQAHGASCFNLAVMYKNGDDGVPADAAKFQEYKKETERL 281          
BLAST of mRNA_M-pyrifera_M_contig10112.237.1 vs. uniprot
Match: A0A7R9ZRA5_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZRA5_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 3.620e-12
Identity = 32/63 (50.79%), Postives = 42/63 (66.67%), Query Frame = 1
Query:   49 RDPPRARTLLEQGCAQN-HGPSCYNLTVMYKNGDDGVASDYKKYRQYREQTEKLAAQLQGVDG 234
            RDP RA  LL  GCA   H PSC+NL VMY+NGDDGV +D  K  +Y+++TE++   + G  G
Sbjct:  163 RDPQRAEQLLVAGCATGAHAPSCFNLAVMYQNGDDGVPADPAKAEEYKQKTERIIQTIGGFGG 225          
BLAST of mRNA_M-pyrifera_M_contig10112.237.1 vs. uniprot
Match: B8BRJ5_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BRJ5_THAPS)

HSP 1 Score: 69.7 bits (169), Expect = 4.750e-12
Identity = 32/72 (44.44%), Postives = 46/72 (63.89%), Query Frame = 1
Query:   10 KQLLRQDGKGPTLRDPPRARTLLEQGCAQNHGPSCYNLTVMYKNGDDGVASDYKKYRQYREQTEKLAAQLQG 225
            +Q L  D +    RDP  A  LL++GC++ H PSCYNL VMY  GD+GV  D +K + Y+++TE+L  +  G
Sbjct:  285 RQKLEGDERTSLKRDPLYAEQLLQRGCSRGHAPSCYNLAVMYTQGDEGVEKDEEKAKDYQKKTEELVQRFGG 356          
BLAST of mRNA_M-pyrifera_M_contig10112.237.1 vs. uniprot
Match: A0A024FSW8_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FSW8_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 1.630e-11
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 1
Query:   49 RDPPRARTLLEQGCAQNHGPSCYNLTVMYKNGDDGVASDYKKYRQYREQTEKLAAQLQGVDGNKQA 246
            RDP RA+    + C  N  P+CYNL VM+KNGD GV  + K Y +Y+++TE+L  Q +G+ G K A
Sbjct:  174 RDPIRAKKYYAKACDANFAPACYNLAVMFKNGDTGVEKNEKMYEEYKKKTEQLVKQAKGMLGVKVA 239          
BLAST of mRNA_M-pyrifera_M_contig10112.237.1 vs. uniprot
Match: A0A448YUH7_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YUH7_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.220e-11
Identity = 32/61 (52.46%), Postives = 41/61 (67.21%), Query Frame = 1
Query:   49 RDPPRARTLLEQGCAQN-HGPSCYNLTVMYKNGDDGVASDYKKYRQYREQTEKLAAQLQGV 228
            RDP RA  LL+  C    H PSC+NLTVMY+NGDDGV +D  K  +Y+++TEK    L G+
Sbjct:  264 RDPKRAEQLLKSACRTGAHAPSCFNLTVMYQNGDDGVPADPVKAEEYKKKTEKAVQTLGGL 324          
BLAST of mRNA_M-pyrifera_M_contig10112.237.1 vs. uniprot
Match: A0A7S2PTR6_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PTR6_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 5.190e-11
Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 1
Query:   49 RDPPRARTLLEQGCAQNHGPSCYNLTVMYKNGDDGVASDYKKYRQYREQTEKLAAQLQG 225
            RDP  A  LL++GC + H PSCYNL VMY  GD+GV  D  K   Y+E+TE+L  +  G
Sbjct:  230 RDPLFAEQLLQRGCQRGHAPSCYNLAVMYTQGDEGVEKDEAKANDYQEKTEELVKRFGG 288          
BLAST of mRNA_M-pyrifera_M_contig10112.237.1 vs. uniprot
Match: A0A1E7FBD2_9STRA (Uncharacterized protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBD2_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 1.520e-10
Identity = 30/61 (49.18%), Postives = 40/61 (65.57%), Query Frame = 1
Query:   49 RDPPRARTLLEQGCAQN-HGPSCYNLTVMYKNGDDGVASDYKKYRQYREQTEKLAAQLQGV 228
            RDP RA  LL+  C    H PSC+NL VMY+NGDDGV  D +K  +Y+++TE+    L G+
Sbjct:  252 RDPKRAEALLQSACRTGAHAPSCFNLAVMYENGDDGVPKDSEKAEEYKKKTEQAVHTLGGL 312          
BLAST of mRNA_M-pyrifera_M_contig10112.237.1 vs. uniprot
Match: A0A7S4AG49_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AG49_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.100e-10
Identity = 31/61 (50.82%), Postives = 39/61 (63.93%), Query Frame = 1
Query:   49 RDPPRARTLLEQGCAQN-HGPSCYNLTVMYKNGDDGVASDYKKYRQYREQTEKLAAQLQGV 228
            RDP RA  LL+  C    H PSC+NL VMY+NGDDGV  D  K  +Y+++TEK    L G+
Sbjct:  270 RDPKRAEQLLQAACRTGAHAPSCFNLAVMYQNGDDGVPVDPTKAEEYKKKTEKAVQTLGGM 330          
BLAST of mRNA_M-pyrifera_M_contig10112.237.1 vs. uniprot
Match: A0A7S1E0R5_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E0R5_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 3.220e-10
Identity = 31/70 (44.29%), Postives = 46/70 (65.71%), Query Frame = 1
Query:   22 RQDGKGPTL-RDPPRARTLLEQGCAQN-HGPSCYNLTVMYKNGDDGVASDYKKYRQYREQTEKLAAQLQG 225
            RQD     L RD PRA  LL + C ++ H PSCYNL VMY  GDDGV +D +K ++++++T+ + ++  G
Sbjct:   60 RQDDARVALKRDAPRAEQLLTKSCLKSGHAPSCYNLAVMYTQGDDGVPADPEKAKEFQKKTDDMVSKFGG 129          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig10112.237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FQ53_ECTSI1.900e-4080.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7R9UGB8_9STRA5.380e-1555.00Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7R9ZRA5_9STRA3.620e-1250.79Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
B8BRJ5_THAPS4.750e-1244.44Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A024FSW8_9STRA1.630e-1146.97Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A448YUH7_9STRA3.220e-1152.46Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2PTR6_9STRA5.190e-1150.85Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A1E7FBD2_9STRA1.520e-1049.18Uncharacterized protein n=1 Tax=Fragilariopsis cyl... [more]
A0A7S4AG49_9STRA3.100e-1050.82Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A7S1E0R5_9STRA3.220e-1044.29Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig10112contigM-pyrifera_M_contig10112:542..1237 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.3
Seed ortholog evalue5.2e-32
Seed eggNOG ortholog2880.D7FQ53
Preferred nameCOA7
KEGG rclassRC00063,RC02819
KEGG koko:K00772,ko:K18180
KEGG ReactionR01402
KEGG Pathwayko00270,ko01100,ko04714,map00270,map01100,map04714
KEGG ModuleM00034
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.Sel1 repeat
EggNOG OGsCOG0790@1,KOG4014@2759
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-01_007450.1
EC2.4.2.28
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Exons2
Model size249
Cds size249
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815508.7145896-CDS-M-pyrifera_M_contig10112:541..7021622815508.7145896-CDS-M-pyrifera_M_contig10112:541..702Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10112 542..702 +
1692277443.3231316-CDS-M-pyrifera_M_contig10112:541..7021692277443.3231316-CDS-M-pyrifera_M_contig10112:541..702Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10112 542..702 +
1622815508.7261002-CDS-M-pyrifera_M_contig10112:1149..12371622815508.7261002-CDS-M-pyrifera_M_contig10112:1149..1237Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10112 1150..1237 +
1692277443.3329139-CDS-M-pyrifera_M_contig10112:1149..12371692277443.3329139-CDS-M-pyrifera_M_contig10112:1149..1237Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig10112 1150..1237 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig10112.237.1prot_M-pyrifera_M_contig10112.237.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig10112 542..1237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig10112.237.1

>prot_M-pyrifera_M_contig10112.237.1 ID=prot_M-pyrifera_M_contig10112.237.1|Name=mRNA_M-pyrifera_M_contig10112.237.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=83bp
MLAKQLLRQDGKGPTLRDPPRARTLLEQGCAQNHGPSCYNLTVMYKNGDD
GVASDYKKYRQYREQTEKLAAQLQGVDGNKQA*
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mRNA from alignment at M-pyrifera_M_contig10112:542..1237+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig10112.237.1 ID=mRNA_M-pyrifera_M_contig10112.237.1|Name=mRNA_M-pyrifera_M_contig10112.237.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=696bp|location=Sequence derived from alignment at M-pyrifera_M_contig10112:542..1237+ (Macrocystis pyrifera P11B4 male)
ATGCTCGCGAAGCAGCTGCTCCGACAAGACGGCAAGGGGCCGACGCTTCG CGACCCCCCACGCGCGCGAACCCTGCTGGAGCAGGGCTGCGCGCAGAACC ACGGCCCGTCCTGCTACAACCTGACGGTCATGTACAAGAACGGGGATGAC GGGGTGGCCAGGTGCGGAGGCAGGGGGTGGGGGGATGTTGATTAGATTTT GGGTGTGGACCTGAGTGCGCTGGGACAGTCTCAGCATTTGTTATGTTGTG TTATGTTGTGTTATTTTTTGTGCCGTGTTTTGTGTGTTTGCCGGGCCGTG CTGCGTTGCGTTGTGCTGCATCGTTTGTGTGTGTGGTGCTGTTTTCGTTT CATATGCGGATGGCTGTGCGGGGTGACTTCGAGGTATTCCTAAGGTGTGT CGCTGTCTGTGAAACGCTCACATACCCTTTTACAGCAGCGGGCTCTCCGA GCGTACGCGTGTTGGTTCGACGTCATCGCCGGGTAAAAATATAACTCGGC AATTTTATCCCAAGCGGACCATTGAGCTCACTCGAGAATGTTGATTTCCG ATCGCGTCCTGTCTGTCTGCATTTTGTCTCTTCTTCCCTGCTTCGATCAA ATTATCAGCGACTACAAAAAGTACAGGCAGTACAGAGAGCAGACGGAGAA GTTGGCGGCGCAGCTTCAGGGAGTCGACGGGAACAAGCAGGCATAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig10112:542..1237+

>mRNA_M-pyrifera_M_contig10112.237.1 ID=mRNA_M-pyrifera_M_contig10112.237.1|Name=mRNA_M-pyrifera_M_contig10112.237.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=498bp|location=Sequence derived from alignment at M-pyrifera_M_contig10112:542..1237+ (Macrocystis pyrifera P11B4 male)
ATGCTCGCGAAGCAGCTGCTCCGACAAGACGGCAAGGGGCCGACGCTTCG
CGACCCCCCACGCGCGCGAACCCTGCTGGAGCAGGGCTGCGCGCAGAACC
ACGGCCCGTCCTGCTACAACCTGACGGTCATGTACAAGAACGGGGATGAC
GGGGTGGCCAGATGCTCGCGAAGCAGCTGCTCCGACAAGACGGCAAGGGG
CCGACGCTTCGCGACCCCCCACGCGCGCGAACCCTGCTGGAGCAGGGCTG
CGCGCAGAACCACGGCCCGTCCTGCTACAACCTGACGGTCATGTACAAGA
ACGGGGATGACGGGGTGGCCAGCGACTACAAAAAGTACAGGCAGTACAGA
GAGCAGACGGAGAAGTTGGCGGCGCAGCTTCAGGGAGTCGACGGGAACAA
GCAGGCATAACGACTACAAAAAGTACAGGCAGTACAGAGAGCAGACGGAG
AAGTTGGCGGCGCAGCTTCAGGGAGTCGACGGGAACAAGCAGGCATAA
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