mRNA_M-pyrifera_M_contig101051.230.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig101051.230.1
Unique NamemRNA_M-pyrifera_M_contig101051.230.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig101051.230.1 vs. uniprot
Match: A0A482V3N3_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482V3N3_9ARCH)

HSP 1 Score: 62.4 bits (150), Expect = 1.370e-10
Identity = 28/49 (57.14%), Postives = 36/49 (73.47%), Query Frame = 1
Query:   34 TARVYSTATGMCESILVGHEGEVSNLTFNCRGTRLLTASSDHTARIWDV 180
            TA  Y   +G C +IL GHEGE+S + FN +G+R+LTASSD TARIW+ 
Sbjct:   24 TAYTYPYVSGACHAILTGHEGEISKVAFNPQGSRVLTASSDKTARIWET 72          
BLAST of mRNA_M-pyrifera_M_contig101051.230.1 vs. uniprot
Match: UPI001494AE7D (dynein assembly factor with WDR repeat domains 1-like n=1 Tax=Ailuropoda melanoleuca TaxID=9646 RepID=UPI001494AE7D)

HSP 1 Score: 54.7 bits (130), Expect = 1.890e-7
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 1
Query:   31 GTARVYSTATGMCESILVGHEGEVSNLTFNCRGTRLLTASSDHT 162
            GTARV+S AT  C + L GHEGE+S ++FN +G RLLT S+D T
Sbjct:   12 GTARVFSAATRKCITTLEGHEGEISKISFNPQGNRLLTGSADKT 55          
BLAST of mRNA_M-pyrifera_M_contig101051.230.1 vs. uniprot
Match: UPI0019E340C4 (Uncharacterized protein n=1 Tax=filamentous cyanobacterium LEGE 11480 TaxID=2777977 RepID=UPI0019E340C4)

HSP 1 Score: 56.6 bits (135), Expect = 4.340e-7
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 1
Query:   28 DGTARVYSTATGMCESILVGHEGEVSNLTFNCRGTRLLTASSDHTARIWDV 180
            D TAR++  +TG     L GH+G V+N  F+  G R+LTASSD+TAR+WDV
Sbjct:    2 DNTARLWDASTGQMLQELKGHQGWVNNAVFSQDGRRILTASSDNTARLWDV 52          
BLAST of mRNA_M-pyrifera_M_contig101051.230.1 vs. uniprot
Match: UPI000DC18D29 (dynein assembly factor with WDR repeat domains 1 n=1 Tax=Theropithecus gelada TaxID=9565 RepID=UPI000DC18D29)

HSP 1 Score: 54.7 bits (130), Expect = 1.400e-6
Identity = 26/44 (59.09%), Postives = 33/44 (75.00%), Query Frame = 1
Query:   31 GTARVYSTATGMCESILVGHEGEVSNLTFNCRGTRLLTASSDHT 162
            GTAR++S AT  C + L GHEGE+S ++FN +G RLLT SSD T
Sbjct:  149 GTARIFSAATRKCIAKLEGHEGEISKISFNPQGNRLLTGSSDKT 192          
BLAST of mRNA_M-pyrifera_M_contig101051.230.1 vs. uniprot
Match: A0A6V7H851_9HYME (Hypothetical protein (Fragment) n=1 Tax=Heterotrigona itama TaxID=395501 RepID=A0A6V7H851_9HYME)

HSP 1 Score: 53.1 bits (126), Expect = 1.480e-6
Identity = 26/52 (50.00%), Postives = 35/52 (67.31%), Query Frame = 1
Query:   28 DGTARVYSTATGMCESILVGHEGEVSNLTFNCRGTRLLTASSDHTARIWDVS 183
            D TA+V+ T    C + L  H+ EV +LTFN  G +L +ASSD TAR+WDV+
Sbjct:    2 DKTAKVWETRMNSCLATLREHDDEVLDLTFNNNGKKLASASSDTTARVWDVT 53          
BLAST of mRNA_M-pyrifera_M_contig101051.230.1 vs. uniprot
Match: UPI00077F8E89 (WD repeat-containing protein 37 n=1 Tax=Parasteatoda tepidariorum TaxID=114398 RepID=UPI00077F8E89)

HSP 1 Score: 53.9 bits (128), Expect = 3.960e-6
Identity = 27/68 (39.71%), Postives = 41/68 (60.29%), Query Frame = 1
Query:    7 QLATASADGTARVYSTATGMCESILVGHEGEVSNLTFNCRGTRLLTASSDHTARIWDVSESGSGTPLQ 210
            Q+ATASAD TAR++    G C     GH+G V+++ F+     +++AS D TA +W VS S   T ++
Sbjct:  139 QIATASADHTARIWDIHNGKCIVQYWGHKGSVNSVRFHPNQDLVVSASGDQTAHVWSVSSSSGNTDMK 206          
BLAST of mRNA_M-pyrifera_M_contig101051.230.1 vs. uniprot
Match: A0A7S3NJX1_9STRA (Hypothetical protein n=2 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NJX1_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.090e-5
Identity = 28/68 (41.18%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    7 QLATASADGTARVYSTATGMCESILVGHEGEVSNLTFNCRGTRLLTASSDHTARIWDVSESGSGTPLQ 210
            QLAT + D   R+++T T  C   LVGHE  V ++ ++  G  L++AS+DHT R+W+V+   +GT L+
Sbjct:   23 QLATGTDDNKVRIWNTDTSECRE-LVGHEDSVISIAYSQDGITLVSASADHTCRLWNVA---NGTELR 86          
BLAST of mRNA_M-pyrifera_M_contig101051.230.1 vs. uniprot
Match: A0A1C7MBJ2_GRIFR (Ribosome assembly protein 4 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MBJ2_GRIFR)

HSP 1 Score: 52.4 bits (124), Expect = 1.410e-5
Identity = 32/74 (43.24%), Postives = 42/74 (56.76%), Query Frame = 1
Query:    7 QLATASADGTARVYSTATGMCESILVGHEGEVSNLTFNCRGTR----LLTASSDHTARIWDVSESGSGTPLQTL 216
            +LA++S DGT RV+ST T +CE  L GH   V+ + +   G      L TASSD T R+WD +    G PL  L
Sbjct:  281 RLASSSKDGTVRVWSTLTRLCEYTLGGHTASVNVVRWGGGGLNGKGVLYTASSDRTVRVWDAN---GGKPLHVL 351          
BLAST of mRNA_M-pyrifera_M_contig101051.230.1 vs. uniprot
Match: A0A168F6A7_9HYPO (Nuclear distribution protein PAC1 n=1 Tax=Moelleriella libera RCEF 2490 TaxID=1081109 RepID=A0A168F6A7_9HYPO)

HSP 1 Score: 52.0 bits (123), Expect = 1.880e-5
Identity = 26/58 (44.83%), Postives = 37/58 (63.79%), Query Frame = 1
Query:   10 LATASADGTARVYSTATGMCESILVGHEGEVSNLTFNCRGTRLLTASSDHTARIWDVS 183
            L +ASAD + R++ T TG C   L GH   V ++  +  G  +L+A SDHTAR+WD+S
Sbjct:  228 LISASADKSLRIWDTTTGYCLKALRGHTDWVRDVCPSLDGQYILSAGSDHTARLWDIS 285          
BLAST of mRNA_M-pyrifera_M_contig101051.230.1 vs. uniprot
Match: D8LUW1_BLAHO (Utp12 domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8LUW1_BLAHO)

HSP 1 Score: 52.0 bits (123), Expect = 2.000e-5
Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 1
Query:   43 VYSTATGMCESILVGHEGEVSNLTFNCRGTRLLTASSDHTARIWDVSESG 192
            ++S  TG     L GHEG +S L FN RGT+L + S DHT R WD+  SG
Sbjct:  564 IWSLRTGKLLDTLTGHEGPISCLRFNGRGTQLASGSWDHTVRTWDLLGSG 613          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig101051.230.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A482V3N3_9ARCH1.370e-1057.14Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
UPI001494AE7D1.890e-759.09dynein assembly factor with WDR repeat domains 1-l... [more]
UPI0019E340C44.340e-752.94Uncharacterized protein n=1 Tax=filamentous cyanob... [more]
UPI000DC18D291.400e-659.09dynein assembly factor with WDR repeat domains 1 n... [more]
A0A6V7H851_9HYME1.480e-650.00Hypothetical protein (Fragment) n=1 Tax=Heterotrig... [more]
UPI00077F8E893.960e-639.71WD repeat-containing protein 37 n=1 Tax=Parasteato... [more]
A0A7S3NJX1_9STRA1.090e-541.18Hypothetical protein n=2 Tax=Aureoumbra lagunensis... [more]
A0A1C7MBJ2_GRIFR1.410e-543.24Ribosome assembly protein 4 n=1 Tax=Grifola frondo... [more]
A0A168F6A7_9HYPO1.880e-544.83Nuclear distribution protein PAC1 n=1 Tax=Moelleri... [more]
D8LUW1_BLAHO2.000e-550.00Utp12 domain-containing protein n=1 Tax=Blastocyst... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig101051contigM-pyrifera_M_contig101051:135..562 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size321
Cds size321
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815508.0193417-CDS-M-pyrifera_M_contig101051:134..2371622815508.0193417-CDS-M-pyrifera_M_contig101051:134..237Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101051 135..237 -
1692277442.877068-CDS-M-pyrifera_M_contig101051:134..2371692277442.877068-CDS-M-pyrifera_M_contig101051:134..237Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101051 135..237 -
1622815508.032809-CDS-M-pyrifera_M_contig101051:344..5621622815508.032809-CDS-M-pyrifera_M_contig101051:344..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101051 345..562 -
1692277442.8856313-CDS-M-pyrifera_M_contig101051:344..5621692277442.8856313-CDS-M-pyrifera_M_contig101051:344..562Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig101051 345..562 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig101051.230.1prot_M-pyrifera_M_contig101051.230.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig101051 135..562 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig101051.230.1

>prot_M-pyrifera_M_contig101051.230.1 ID=prot_M-pyrifera_M_contig101051.230.1|Name=mRNA_M-pyrifera_M_contig101051.230.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=107bp
CLQLATASADGTARVYSTATGMCESILVGHEGEVSNLTFNCRGTRLLTAS
SDHTARIWDVSESGSGTPLQTLSGHTDEIFSVSYNYDSTTIITASKDNTC
RLWKAI*
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mRNA from alignment at M-pyrifera_M_contig101051:135..562-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig101051.230.1 ID=mRNA_M-pyrifera_M_contig101051.230.1|Name=mRNA_M-pyrifera_M_contig101051.230.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=428bp|location=Sequence derived from alignment at M-pyrifera_M_contig101051:135..562- (Macrocystis pyrifera P11B4 male)
TGTTTGCAGCTTGCAACAGCTTCTGCGGATGGCACGGCACGGGTGTATTC TACGGCGACGGGAATGTGTGAGTCGATTCTGGTGGGGCATGAAGGAGAAG TGTCCAACCTCACGTTCAATTGCAGAGGAACAAGGCTGCTTACAGCATCC TCGGATCACACTGCGCGCATTTGGGATGTCTCAGAAAGTGGATCAGGCAC ACCACTTCAAACTCTCTCGTAAGTTACGGCAGGGCTTCGAAACACTCTAC TCTTCTTCGTGATGCGAACTATGGAGAAGAACAACCTTTTTTCTTTCTTC TTTTCTTTTCTTTTTCCTTCGACAGGGGACACACGGATGAAATTTTTAGC GTGAGCTACAACTATGACTCCACCACTATCATTACAGCATCCAAAGACAA TACATGTAGGTTGTGGAAAGCAATTTGA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig101051:135..562-

>mRNA_M-pyrifera_M_contig101051.230.1 ID=mRNA_M-pyrifera_M_contig101051.230.1|Name=mRNA_M-pyrifera_M_contig101051.230.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=642bp|location=Sequence derived from alignment at M-pyrifera_M_contig101051:135..562- (Macrocystis pyrifera P11B4 male)
TGTTTGCAGCTTGCAACAGCTTCTGCGGATGGCACGGCACGGGTGTATTC
TACGGCGACGGGAATGTGTGAGTCGATTCTGGTGGGGCATGAAGGAGAAG
TGTCCAACCTCACGTTCAATTGCAGAGGAACAAGGCTGCTTACAGCATCC
TCGGATCACACTGCGCGCATTTGGGATGTCTCAGAAAGTGGATCAGGCAC
ACCACTTCAAACTCTCTCTGTTTGCAGCTTGCAACAGCTTCTGCGGATGG
CACGGCACGGGTGTATTCTACGGCGACGGGAATGTGTGAGTCGATTCTGG
TGGGGCATGAAGGAGAAGTGTCCAACCTCACGTTCAATTGCAGAGGAACA
AGGCTGCTTACAGCATCCTCGGATCACACTGCGCGCATTTGGGATGTCTC
AGAAAGTGGATCAGGCACACCACTTCAAACTCTCTCGGGACACACGGATG
AAATTTTTAGCGTGAGCTACAACTATGACTCCACCACTATCATTACAGCA
TCCAAAGACAATACATGTAGGTTGTGGAAAGCAATTTGAGGGACACACGG
ATGAAATTTTTAGCGTGAGCTACAACTATGACTCCACCACTATCATTACA
GCATCCAAAGACAATACATGTAGGTTGTGGAAAGCAATTTGA
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