mRNA_M-pyrifera_M_contig99986.22993.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99986.22993.1
Unique NamemRNA_M-pyrifera_M_contig99986.22993.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99986.22993.1 vs. uniprot
Match: A0A2W4KY61_9PROT (2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2W4KY61_9PROT)

HSP 1 Score: 67.8 bits (164), Expect = 2.640e-12
Identity = 33/62 (53.23%), Postives = 47/62 (75.81%), Query Frame = 1
Query:    1 LRAVLPTNIRLIPVGGVGAENAAQWMSAGAAALGVGSALFKPEWSSEEVEEAARALYMAMHS 186
            LRAVLP ++RL+PVGG+GA+N A +++AGAA  G+GS L+KP  S+++ +E AR L  A  S
Sbjct:  145 LRAVLPASVRLLPVGGIGAQNMAAYLAAGAAGFGIGSTLYKPGKSADQTQEDARKLMEAWRS 206          
BLAST of mRNA_M-pyrifera_M_contig99986.22993.1 vs. uniprot
Match: A0A4S1XHI3_9SPHN (2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=1 Tax=Sphingomonas gei TaxID=1395960 RepID=A0A4S1XHI3_9SPHN)

HSP 1 Score: 65.1 bits (157), Expect = 2.810e-11
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 LRAVLPTNIRLIPVGGVGAENAAQWMSAGAAALGVGSALFKPEWSSEEVEEAARALYMAM 180
            +RAVLP ++RL+PVGGV  +N A W  AGAA  G+GSAL+KP  ++ EV E ARA   A+
Sbjct:  148 MRAVLPKDLRLLPVGGVAPDNMAPWREAGAAGFGLGSALYKPGLTAAEVGERARAFVSAL 207          
BLAST of mRNA_M-pyrifera_M_contig99986.22993.1 vs. uniprot
Match: UPI001B002F32 (2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=1 Tax=Novosphingobium sp. TaxID=1874826 RepID=UPI001B002F32)

HSP 1 Score: 63.5 bits (153), Expect = 1.080e-10
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 LRAVLPTNIRLIPVGGVGAENAAQWMSAGAAALGVGSALFKPEWSSEEVEEAARALYMAM 180
            +RAVLP ++RL+PVGGV  +N A W++AGAA  G+GSAL+KP   ++EV   AR    A+
Sbjct:  148 MRAVLPRDLRLLPVGGVSPDNMAPWLAAGAAGFGLGSALYKPGMGADEVGANARGFVAAL 207          
BLAST of mRNA_M-pyrifera_M_contig99986.22993.1 vs. uniprot
Match: A0A2S5JH24_9RHOB (2-keto-3-deoxy-phosphogalactonate aldolase n=1 Tax=Albidovulum inexpectatum TaxID=196587 RepID=A0A2S5JH24_9RHOB)

HSP 1 Score: 62.8 bits (151), Expect = 1.900e-10
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 LRAVLPTNIRLIPVGGVGAENAAQWMSAGAAALGVGSALFKPEWSSEEVEEAARALYMA 177
            +RAVLP   R+  VGGVGA+N AQW +AGA   G+GSAL+KP  + E+V E AR L  A
Sbjct:  137 MRAVLPEGARVYAVGGVGADNFAQWRAAGADGFGIGSALYKPGLTVEQVAERARELVQA 195          
BLAST of mRNA_M-pyrifera_M_contig99986.22993.1 vs. uniprot
Match: A0A2T6F055_9BURK (2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=1 Tax=Glaciimonas sp. PCH181 TaxID=2133943 RepID=A0A2T6F055_9BURK)

HSP 1 Score: 62.8 bits (151), Expect = 2.030e-10
Identity = 32/58 (55.17%), Postives = 43/58 (74.14%), Query Frame = 1
Query:    4 RAVLPTNIRLIPVGGVGAENAAQWMSAGAAALGVGSALFKPEWSSEEVEEAARALYMA 177
            RAV+PTNI L+PVGG+  EN A +M+AGA+  G+GSAL+KP  S+EEV + A+    A
Sbjct:  144 RAVIPTNIALVPVGGITPENMATFMAAGASGFGLGSALYKPGMSAEEVSKNAQQFVAA 201          
BLAST of mRNA_M-pyrifera_M_contig99986.22993.1 vs. uniprot
Match: A0A841HNY3_9GAMM (2-dehydro-3-deoxyphosphogalactonate aldolase n=1 Tax=Povalibacter uvarum TaxID=732238 RepID=A0A841HNY3_9GAMM)

HSP 1 Score: 62.0 bits (149), Expect = 4.250e-10
Identity = 28/56 (50.00%), Postives = 42/56 (75.00%), Query Frame = 1
Query:    1 LRAVLPTNIRLIPVGGVGAENAAQWMSAGAAALGVGSALFKPEWSSEEVEEAARAL 168
            L  VLP ++R+ PVGGVGA++ A+W+ AGAA  G GS LF+P +S++E+ + AR +
Sbjct:  144 LNDVLPKHVRVYPVGGVGADDIAEWLQAGAAGFGFGSELFRPTYSTQEISQRARRV 199          
BLAST of mRNA_M-pyrifera_M_contig99986.22993.1 vs. uniprot
Match: S9QTE6_9RHOB (2-keto-3-deoxy-phosphogalactonate aldolase n=1 Tax=Rubellimicrobium thermophilum DSM 16684 TaxID=1123069 RepID=S9QTE6_9RHOB)

HSP 1 Score: 61.6 bits (148), Expect = 5.430e-10
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 1
Query:    1 LRAVLPTNIRLIPVGGVGAENAAQWMSAGAAALGVGSALFKPEWSSEEVEEAARALYMA 177
            +RAVLP+  R+  VGG G EN A W++AGA   G+GSAL++P  ++E+V E ARAL  A
Sbjct:  137 MRAVLPSGTRVYAVGGAGPENFAAWLAAGADGFGIGSALYRPGMTAEQVGERARALVAA 195          
BLAST of mRNA_M-pyrifera_M_contig99986.22993.1 vs. uniprot
Match: UPI001B16B97D (2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=1 Tax=Sphingomonas sp. TaxID=28214 RepID=UPI001B16B97D)

HSP 1 Score: 61.6 bits (148), Expect = 5.720e-10
Identity = 29/60 (48.33%), Postives = 43/60 (71.67%), Query Frame = 1
Query:    1 LRAVLPTNIRLIPVGGVGAENAAQWMSAGAAALGVGSALFKPEWSSEEVEEAARALYMAM 180
            +RAVLP ++RL+PVGG+  +N   W  AGAA  G+GSAL+KP +++++V   ARA   A+
Sbjct:  148 MRAVLPKDMRLLPVGGIAPDNMDPWREAGAAGFGLGSALYKPGFTADDVRPRARAFVAAL 207          
BLAST of mRNA_M-pyrifera_M_contig99986.22993.1 vs. uniprot
Match: A0A845A7E5_9SPHN (2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=2 Tax=Altericroceibacterium indicum TaxID=374177 RepID=A0A845A7E5_9SPHN)

HSP 1 Score: 61.2 bits (147), Expect = 8.310e-10
Identity = 28/60 (46.67%), Postives = 44/60 (73.33%), Query Frame = 1
Query:    1 LRAVLPTNIRLIPVGGVGAENAAQWMSAGAAALGVGSALFKPEWSSEEVEEAARALYMAM 180
            +RAVLP ++R++PVGG+  +N   W++AGAA  G+GSAL+KP  ++EEV   A+A   ++
Sbjct:  149 MRAVLPKDLRILPVGGITPDNCGPWLAAGAAGFGLGSALYKPGMTAEEVRGHAQAFQKSL 208          
BLAST of mRNA_M-pyrifera_M_contig99986.22993.1 vs. uniprot
Match: A0A8J3DRR4_9HYPH (2-dehydro-3-deoxy-6-phosphogalactonate aldolase n=1 Tax=Corticibacterium populi TaxID=1607949 RepID=A0A8J3DRR4_9HYPH)

HSP 1 Score: 60.8 bits (146), Expect = 1.010e-9
Identity = 31/57 (54.39%), Postives = 43/57 (75.44%), Query Frame = 1
Query:    1 LRAVLPTNIRLIPVGGVGAENAAQWMSAGAAALGVGSALFKPEWSSEEV-EEAARAL 168
            LRAVLP   ++ PVGGVG ++ A W +AGA   G+GS+LFKP+WS++ V EEA R++
Sbjct:  137 LRAVLPFETQIYPVGGVGPDDFAVWRAAGANGFGLGSSLFKPDWSADRVGEEAKRSV 193          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99986.22993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2W4KY61_9PROT2.640e-1253.232-dehydro-3-deoxy-6-phosphogalactonate aldolase n=... [more]
A0A4S1XHI3_9SPHN2.810e-1155.002-dehydro-3-deoxy-6-phosphogalactonate aldolase n=... [more]
UPI001B002F321.080e-1051.672-dehydro-3-deoxy-6-phosphogalactonate aldolase n=... [more]
A0A2S5JH24_9RHOB1.900e-1055.932-keto-3-deoxy-phosphogalactonate aldolase n=1 Tax... [more]
A0A2T6F055_9BURK2.030e-1055.172-dehydro-3-deoxy-6-phosphogalactonate aldolase n=... [more]
A0A841HNY3_9GAMM4.250e-1050.002-dehydro-3-deoxyphosphogalactonate aldolase n=1 T... [more]
S9QTE6_9RHOB5.430e-1052.542-keto-3-deoxy-phosphogalactonate aldolase n=1 Tax... [more]
UPI001B16B97D5.720e-1048.332-dehydro-3-deoxy-6-phosphogalactonate aldolase n=... [more]
A0A845A7E5_9SPHN8.310e-1046.672-dehydro-3-deoxy-6-phosphogalactonate aldolase n=... [more]
A0A8J3DRR4_9HYPH1.010e-954.392-dehydro-3-deoxy-6-phosphogalactonate aldolase n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99986contigM-pyrifera_M_contig99986:5..196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score62.0
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog1449076.JOOE01000004_gene611
Preferred nameeda
KEGG rclassRC00307,RC00308,RC00435
KEGG koko:K01625,ko:K01631
KEGG ReactionR00470,R01064,R05605
KEGG Pathwayko00030,ko00052,ko00630,ko01100,ko01120,ko01200,map00030,map00052,map00630,map01100,map01120,map01200
KEGG ModuleM00008,M00061,M00308,M00552,M00631
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Aldolase
EggNOG OGs1RD0T@1224,2K1WJ@204457,2U7AQ@28211,COG0800@1,COG0800@2
EC4.1.2.14,4.1.2.21,4.1.3.42
COG Functional cat.G
Best tax levelSphingomonadales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816917.2755575-CDS-M-pyrifera_M_contig99986:4..1961622816917.2755575-CDS-M-pyrifera_M_contig99986:4..196Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99986 5..196 +
1692278254.1721706-CDS-M-pyrifera_M_contig99986:4..1961692278254.1721706-CDS-M-pyrifera_M_contig99986:4..196Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99986 5..196 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99986.22993.1prot_M-pyrifera_M_contig99986.22993.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99986 5..196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99986.22993.1

>prot_M-pyrifera_M_contig99986.22993.1 ID=prot_M-pyrifera_M_contig99986.22993.1|Name=mRNA_M-pyrifera_M_contig99986.22993.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=64bp
LRAVLPTNIRLIPVGGVGAENAAQWMSAGAAALGVGSALFKPEWSSEEVE
EAARALYMAMHSE*
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mRNA from alignment at M-pyrifera_M_contig99986:5..196+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99986.22993.1 ID=mRNA_M-pyrifera_M_contig99986.22993.1|Name=mRNA_M-pyrifera_M_contig99986.22993.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=192bp|location=Sequence derived from alignment at M-pyrifera_M_contig99986:5..196+ (Macrocystis pyrifera P11B4 male)
TTAAGAGCTGTCTTGCCCACCAACATTCGTTTGATTCCAGTTGGTGGAGT TGGGGCTGAGAATGCTGCACAATGGATGAGTGCTGGTGCTGCTGCACTAG GTGTTGGTTCGGCACTCTTCAAGCCAGAGTGGAGTAGCGAAGAAGTAGAA GAAGCTGCAAGAGCTCTGTACATGGCAATGCACTCTGAGTAA
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig99986:5..196+

>mRNA_M-pyrifera_M_contig99986.22993.1 ID=mRNA_M-pyrifera_M_contig99986.22993.1|Name=mRNA_M-pyrifera_M_contig99986.22993.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=384bp|location=Sequence derived from alignment at M-pyrifera_M_contig99986:5..196+ (Macrocystis pyrifera P11B4 male)
TTAAGAGCTGTCTTGCCCACCAACATTCGTTTGATTCCAGTTGGTGGAGT
TGGGGCTGAGAATGCTGCACAATGGATGAGTGCTGGTGCTGCTGCACTAG
GTGTTGGTTCGGCACTCTTCAAGCCAGAGTGGAGTAGCGAAGAAGTAGAA
GAAGCTGCAAGAGCTCTGTACATGGCAATGCACTCTGAGTAATTAAGAGC
TGTCTTGCCCACCAACATTCGTTTGATTCCAGTTGGTGGAGTTGGGGCTG
AGAATGCTGCACAATGGATGAGTGCTGGTGCTGCTGCACTAGGTGTTGGT
TCGGCACTCTTCAAGCCAGAGTGGAGTAGCGAAGAAGTAGAAGAAGCTGC
AAGAGCTCTGTACATGGCAATGCACTCTGAGTAA
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