mRNA_M-pyrifera_M_contig99975.22988.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig99975.22988.1
Unique NamemRNA_M-pyrifera_M_contig99975.22988.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig99975.22988.1 vs. uniprot
Match: G5AID6_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5AID6_PHYSP)

HSP 1 Score: 139 bits (351), Expect = 7.310e-36
Identity = 71/150 (47.33%), Postives = 89/150 (59.33%), Query Frame = 1
Query:    4 ALGGNCPLSCSGHGEC-RAYGRCECWGGWTGFGCQQRECQYAPAF-----GVDSSLPHQPVECAGQGICDPHTGECMCFAGFEGAACERTACPNKCSGHGICTLLSSLSNL--------PSSYSDWEMDRIVTCQCDPGFMGADCSLRQC 411
            ALG +C   CSGHG C RA GRC C+ G+ G  C  R C    A+     G+D  L HQP EC+  G CD  TG C C +GFEG ACER +CPN CSG+G C  +   + L         ++Y+ W+ D+I+ CQCDPGF G DCS+R C
Sbjct:   24 ALGFSCDGGCSGHGACQRATGRCTCFPGFGGATCASRLCPMGAAWVDRAWGID--LAHQPAECSAMGRCDRTTGTCTCESGFEGLACERLSCPNACSGNGRCVSMRDAATLRDDRQFFVSTTYTLWDADKIMGCQCDPGFTGMDCSMRMC 171          
BLAST of mRNA_M-pyrifera_M_contig99975.22988.1 vs. uniprot
Match: A0A2P4XFN2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XFN2_9STRA)

HSP 1 Score: 139 bits (349), Expect = 1.370e-35
Identity = 71/149 (47.65%), Postives = 88/149 (59.06%), Query Frame = 1
Query:    4 ALGGNCPLSCSGHGEC-RAYGRCECWGGWTGFGCQQRECQYAPAFGVD----SSLPHQPVECAGQGICDPHTGECMCFAGFEGAACERTACPNKCSGHGICTLLSSLSNLP--------SSYSDWEMDRIVTCQCDPGFMGADCSLRQC 411
            ALG +C   CSGHG C R  GRC C+ G+ G  C  R C  A A+ VD    + + HQP EC+  G CD  TG C C  GFEG ACER +CPN CSG+G C  +   + L         ++Y+ W+ D+I+ CQCDPGF G DCSLR C
Sbjct:   21 ALGFSCDGGCSGHGACQRLTGRCTCFPGFGGATCASRLCPMAAAW-VDRAWTTDMAHQPAECSAMGRCDRSTGTCTCETGFEGVACERLSCPNACSGNGRCVSMRDAATLQDDRHFYVKTTYTLWDADKIMGCQCDPGFTGMDCSLRTC 168          
BLAST of mRNA_M-pyrifera_M_contig99975.22988.1 vs. uniprot
Match: A0A0W8D933_PHYNI (EGF-like domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D933_PHYNI)

HSP 1 Score: 134 bits (338), Expect = 2.860e-34
Identity = 69/151 (45.70%), Postives = 88/151 (58.28%), Query Frame = 1
Query:    1 SALGGNCPLSCSGHGEC-RAYGRCECWGGWTGFGCQQRECQYAPAF-----GVDSSLPHQPVECAGQGICDPHTGECMCFAGFEGAACERTACPNKCSGHGICTLLSSLSNLP--------SSYSDWEMDRIVTCQCDPGFMGADCSLRQC 411
            SA G +C   CSGHG C R+ GRC C+ G+ G  C  R C    A+      VD +  HQP EC+  G CD  TG C C +GFEG ACER +CPN CSG+G C  +   + +         ++YS W+ D+I+ CQCDPGF G DCS R+C
Sbjct:   17 SAFGFSCDGGCSGHGACQRSTGRCTCFPGYGGATCASRLCPTGAAWVDRAWAVDKA--HQPAECSAMGRCDRSTGTCTCESGFEGVACERLSCPNLCSGNGRCISMRDAATIQDDRNFFVSTTYSLWDADKIMGCQCDPGFTGFDCSQREC 165          
BLAST of mRNA_M-pyrifera_M_contig99975.22988.1 vs. uniprot
Match: D0NQ83_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NQ83_PHYIT)

HSP 1 Score: 135 bits (339), Expect = 3.230e-34
Identity = 70/149 (46.98%), Postives = 89/149 (59.73%), Query Frame = 1
Query:    4 ALGGNCPLSCSGHGEC-RAYGRCECWGGWTGFGCQQRECQYAPAFGVDSSLP----HQPVECAGQGICDPHTGECMCFAGFEGAACERTACPNKCSGHGICTLLSSLSNLP--------SSYSDWEMDRIVTCQCDPGFMGADCSLRQC 411
            ALG +C   CSGHG C R+ GRC C+ G+ G  C  + C    A+ VD +      HQPVEC+  G CD  TG C C +GFEG ACER +CPN CSG+G C  +   + L         ++YS W+ D+I+ CQCDPGF G DCS R+C
Sbjct:   17 ALGFSCDGGCSGHGACQRSTGRCSCFPGYGGATCVSKLCPTGAAW-VDRAWTTDNAHQPVECSAMGRCDRPTGICACESGFEGVACERLSCPNACSGNGRCISMRDAATLQDDRNFLVSTTYSLWDADKIMGCQCDPGFSGFDCSQREC 164          
BLAST of mRNA_M-pyrifera_M_contig99975.22988.1 vs. uniprot
Match: Q9Y0F6_THAWE (Sexually induced protein 3 n=1 Tax=Thalassiosira weissflogii TaxID=1577725 RepID=Q9Y0F6_THAWE)

HSP 1 Score: 125 bits (315), Expect = 1.590e-33
Identity = 58/143 (40.56%), Postives = 82/143 (57.34%), Query Frame = 1
Query:   19 CPLSCSGHGECRAYGRCECW------GGWTGFGCQQRECQYAPAFGVDSSLP----HQPVECAGQGICDPHTGECMCFAGFEGAACERTACPNKCSGHGICTLLSSLSNLPSSYSD--WEMDRIVTCQCDPGFMGADCSLRQC 411
            CP +CSGHG C    +C C+        WTG  C  R C    A+  + ++     H  +EC+ +G+CD  TGEC+CF  ++G ACERT CPN CSG GIC    SL+ L  +  D  W+ ++ + C+CD G+ G DCS ++C
Sbjct:   19 CPNACSGHGSCGINDKCTCYLRPNGDPAWTGHDCSMRTCPKGNAWVAEEAVSLDDVHPRMECSNKGMCDRETGECVCFENYDGKACERTICPNDCSGRGICLPQKSLAALEGATYDTPWDAEKHLGCKCDAGYRGPDCSQKEC 161          
BLAST of mRNA_M-pyrifera_M_contig99975.22988.1 vs. uniprot
Match: A0A8J5IJG9_9STRA (EGF_2 domain-containing protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5IJG9_9STRA)

HSP 1 Score: 131 bits (330), Expect = 5.230e-33
Identity = 68/149 (45.64%), Postives = 87/149 (58.39%), Query Frame = 1
Query:    7 LGGNCPLSCSGHGEC-RAYGRCECWGGWTGFGCQQRECQYAPAF-----GVDSSLPHQPVECAGQGICDPHTGECMCFAGFEGAACERTACPNKCSGHGICTLLSSLSNLP--------SSYSDWEMDRIVTCQCDPGFMGADCSLRQC 411
            LG +C   CSGHG C R+ GRC C+ G+ G  C  R C    A+      VD +  HQP +C+  G CD  TG C C +GFEG ACER +CPN CSG+G C  +   + L         ++YS W+ D+I+ CQCDPGF G DCS R+C
Sbjct:   21 LGFSCDGGCSGHGACQRSTGRCTCFPGFGGATCASRLCPTGAAWVDRAWAVDKA--HQPSQCSAMGRCDRSTGACTCESGFEGVACERLSCPNLCSGNGRCISMRDAATLQDDRNFFVSTTYSLWDADKIMGCQCDPGFTGFDCSQREC 167          
BLAST of mRNA_M-pyrifera_M_contig99975.22988.1 vs. uniprot
Match: A0A7R9WEC2_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WEC2_9STRA)

HSP 1 Score: 123 bits (308), Expect = 2.830e-32
Identity = 65/164 (39.63%), Postives = 83/164 (50.61%), Query Frame = 1
Query:    1 SALGGNCPLSCSGHGECRAYGRCECW--------------GGWTGFGCQQRECQYAPAFGVD----SSLPHQPVECAGQGICDPHTGECMCFAGFEGAACERTACPNKCSGHGICTLLSSL--------SNLPSSYSD-WEMDRIVTCQCDPGFMGADCSLRQC 411
            S    +CP +CSGHG C  + RC C+                W G  C  R C YA A+ VD    +++ H   EC+  G CD  TG C CF G+EG AC+RT CPNKCSGHG C              S+    YS  W+  +I  C+C+ GF G DCSL++C
Sbjct:   16 SMASASCPNACSGHGRCSEFDRCTCFTRKDGTVDSEGNTVAAWQGPDCSLRTCPYAKAW-VDVPFANNVAHLSAECSNAGTCDRKTGLCQCFPGYEGRACDRTVCPNKCSGHGTCQSQKQFFVDHADEASDASIVYSTAWDAKKIYGCKCELGFRGPDCSLKEC 178          
BLAST of mRNA_M-pyrifera_M_contig99975.22988.1 vs. uniprot
Match: A0A7S3GPS4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GPS4_9STRA)

HSP 1 Score: 128 bits (322), Expect = 7.980e-32
Identity = 64/153 (41.83%), Postives = 80/153 (52.29%), Query Frame = 1
Query:   19 CPLSCSGHGECRAYGRCECWGGWTGFG--CQQRECQYAPAFGVDSS----LPHQPVECAGQGICDPHTGECMCFAGFEGAACERTACPNKCSGHGICTLLSSLS----------------NLPSSYSDWEMDRIVTCQCDPGFMGADCSLRQC 411
            CP  C+GHG C     C C+  W G    C  R C +  A+ VD +    + HQ  EC+  G CD  TG C CFAGF G AC+R+ACP  CSGHGIC+ +  +S                    SYS+W+ + I  C+CD GF GADCSL  C
Sbjct:   21 CPNGCNGHGSCSTSNVCTCYPQWDGGAADCSARVCPFGTAW-VDKAYAADVAHQSAECSNAGFCDRETGNCKCFAGFTGNACQRSACPADCSGHGICSTIGDVSLYEGPDYDPSIIFAGDGFGPSYSNWDKNSIQLCKCDQGFFGADCSLAMC 172          
BLAST of mRNA_M-pyrifera_M_contig99975.22988.1 vs. uniprot
Match: A0A7S0T0J1_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0T0J1_9STRA)

HSP 1 Score: 128 bits (322), Expect = 8.500e-32
Identity = 64/152 (42.11%), Postives = 78/152 (51.32%), Query Frame = 1
Query:   19 CPLSCSGHGECRAYGRCECWGGWTGFG--CQQRECQYAPAFG---VDSSLPHQPVECAGQGICDPHTGECMCFAGFEGAACERTACPNKCSGHGICTLLSSLSNLP----------------SSYSDWEMDRIVTCQCDPGFMGADCSLRQC 411
            CP SCSGHG C     C+C+ GW G    C  R+C    A+      +   HQ  EC+  GICD  TG C CF GF G+AC+R+ CPN CSGHG C  ++ +S                   SSYS W+   I  C CD GF G DCSL+ C
Sbjct:   32 CPNSCSGHGTCAGGNICQCFTGWNGGAADCSFRQCANGTAWADKAYATDEAHQTTECSNAGICDRSTGLCKCFDGFTGSACQRSVCPNDCSGHGSCLTINDISVFEGPPYDPTSVYKGTGRGSSYSYWDKSSITMCNCDDGFFGPDCSLKMC 183          
BLAST of mRNA_M-pyrifera_M_contig99975.22988.1 vs. uniprot
Match: A0A7S3LYS2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LYS2_9STRA)

HSP 1 Score: 128 bits (322), Expect = 8.760e-32
Identity = 64/153 (41.83%), Postives = 80/153 (52.29%), Query Frame = 1
Query:   19 CPLSCSGHGECRAYGRCECWGGWTGFG--CQQRECQYAPAFGVDSS----LPHQPVECAGQGICDPHTGECMCFAGFEGAACERTACPNKCSGHGICTLLSSLS----------------NLPSSYSDWEMDRIVTCQCDPGFMGADCSLRQC 411
            CP  C+GHG C     C C+  W G    C  R C +  A+ VD +    + HQ  EC+  G CD  TG C CFAGF G AC+R+ACP  CSGHGIC+ +  +S                    SYS+W+ + I  C+CD GF GADCSL  C
Sbjct:   21 CPNGCNGHGSCSTSNVCTCYPQWDGGAADCSARVCPFGTAW-VDKAYAADVAHQSAECSNAGFCDRETGNCKCFAGFTGNACQRSACPADCSGHGICSTIGDVSLYEGPDYDPSIIFAGDGFGPSYSNWDKNSIQLCKCDQGFFGADCSLAMC 172          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99975.22988.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
G5AID6_PHYSP7.310e-3647.33Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A2P4XFN2_9STRA1.370e-3547.65Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A0W8D933_PHYNI2.860e-3445.70EGF-like domain-containing protein n=10 Tax=Phytop... [more]
D0NQ83_PHYIT3.230e-3446.98Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
Q9Y0F6_THAWE1.590e-3340.56Sexually induced protein 3 n=1 Tax=Thalassiosira w... [more]
A0A8J5IJG9_9STRA5.230e-3345.64EGF_2 domain-containing protein n=1 Tax=Phytophtho... [more]
A0A7R9WEC2_9STRA2.830e-3239.63Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S3GPS4_9STRA7.980e-3241.83Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S0T0J1_9STRA8.500e-3242.11Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A7S3LYS2_9STRA8.760e-3241.83Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99975contigM-pyrifera_M_contig99975:27..437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.6
Seed ortholog evalue1.8e-29
Seed eggNOG ortholog4787.PITG_15241T0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.EGF-like domain
EggNOG OGs3Q82K@4776,KOG1225@1,KOG1225@2759
COG Functional cat.T
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816917.0752487-CDS-M-pyrifera_M_contig99975:26..4371622816917.0752487-CDS-M-pyrifera_M_contig99975:26..437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99975 27..437 -
1692278254.083118-CDS-M-pyrifera_M_contig99975:26..4371692278254.083118-CDS-M-pyrifera_M_contig99975:26..437Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig99975 27..437 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99975.22988.1prot_M-pyrifera_M_contig99975.22988.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig99975 27..437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig99975.22988.1

>prot_M-pyrifera_M_contig99975.22988.1 ID=prot_M-pyrifera_M_contig99975.22988.1|Name=mRNA_M-pyrifera_M_contig99975.22988.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=137bp
SALGGNCPLSCSGHGECRAYGRCECWGGWTGFGCQQRECQYAPAFGVDSS
LPHQPVECAGQGICDPHTGECMCFAGFEGAACERTACPNKCSGHGICTLL
SSLSNLPSSYSDWEMDRIVTCQCDPGFMGADCSLRQC
back to top

mRNA from alignment at M-pyrifera_M_contig99975:27..437-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig99975.22988.1 ID=mRNA_M-pyrifera_M_contig99975.22988.1|Name=mRNA_M-pyrifera_M_contig99975.22988.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=411bp|location=Sequence derived from alignment at M-pyrifera_M_contig99975:27..437- (Macrocystis pyrifera P11B4 male)
AGTGCTCTCGGAGGAAATTGTCCATTGTCATGCTCTGGACATGGAGAATG CCGAGCCTATGGCCGATGTGAGTGCTGGGGTGGGTGGACTGGATTTGGCT GTCAACAGAGAGAGTGCCAATATGCACCTGCTTTTGGTGTGGATTCTTCC CTTCCACACCAACCAGTGGAATGTGCTGGACAAGGGATTTGCGACCCACA TACGGGTGAATGCATGTGCTTTGCTGGCTTCGAAGGCGCAGCATGCGAAC GGACAGCATGTCCGAACAAGTGTTCAGGACATGGGATTTGCACTCTGCTC TCTTCCCTCTCCAACTTACCATCGTCCTACTCTGATTGGGAAATGGATCG CATTGTAACATGTCAATGTGATCCTGGTTTCATGGGAGCAGATTGTTCCT TGAGACAGTGT
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig99975:27..437-

>mRNA_M-pyrifera_M_contig99975.22988.1 ID=mRNA_M-pyrifera_M_contig99975.22988.1|Name=mRNA_M-pyrifera_M_contig99975.22988.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=822bp|location=Sequence derived from alignment at M-pyrifera_M_contig99975:27..437- (Macrocystis pyrifera P11B4 male)
AGTGCTCTCGGAGGAAATTGTCCATTGTCATGCTCTGGACATGGAGAATG
CCGAGCCTATGGCCGATGTGAGTGCTGGGGTGGGTGGACTGGATTTGGCT
GTCAACAGAGAGAGTGCCAATATGCACCTGCTTTTGGTGTGGATTCTTCC
CTTCCACACCAACCAGTGGAATGTGCTGGACAAGGGATTTGCGACCCACA
TACGGGTGAATGCATGTGCTTTGCTGGCTTCGAAGGCGCAGCATGCGAAC
GGACAGCATGTCCGAACAAGTGTTCAGGACATGGGATTTGCACTCTGCTC
TCTTCCCTCTCCAACTTACCATCGTCCTACTCTGATTGGGAAATGGATCG
CATTGTAACATGTCAATGTGATCCTGGTTTCATGGGAGCAGATTGTTCCT
TGAGACAGTGTAGTGCTCTCGGAGGAAATTGTCCATTGTCATGCTCTGGA
CATGGAGAATGCCGAGCCTATGGCCGATGTGAGTGCTGGGGTGGGTGGAC
TGGATTTGGCTGTCAACAGAGAGAGTGCCAATATGCACCTGCTTTTGGTG
TGGATTCTTCCCTTCCACACCAACCAGTGGAATGTGCTGGACAAGGGATT
TGCGACCCACATACGGGTGAATGCATGTGCTTTGCTGGCTTCGAAGGCGC
AGCATGCGAACGGACAGCATGTCCGAACAAGTGTTCAGGACATGGGATTT
GCACTCTGCTCTCTTCCCTCTCCAACTTACCATCGTCCTACTCTGATTGG
GAAATGGATCGCATTGTAACATGTCAATGTGATCCTGGTTTCATGGGAGC
AGATTGTTCCTTGAGACAGTGT
back to top