|
Homology
BLAST of mRNA_M-pyrifera_M_contig999.22976.1 vs. uniprot
Match: A0A6H5JZ79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ79_9PHAE) HSP 1 Score: 171 bits (434), Expect = 2.570e-48 Identity = 84/139 (60.43%), Postives = 107/139 (76.98%), Query Frame = 1 Query: 1 PAARRANIDFERSERERIHFETATRVMNYQIQADR----LKLSQGLEPPETKRMPRMEIPNDLYEEDDFKVRAAGIEAVYAWDQSPKLITFSAYGVLYNWHLPIGLIMREALGRAHDYVHRLPSPASFEKNFRTAFNEA 405
PAARRANIDFERSERERIHFETATRVMNY+IQA+R L ++ L P E +R+ R ++ N+ Y + G+ A Y WDQ P+LITFSAYGVLYNWHLP+GL+MREALGR+H+YVHR+P P +F+K+F+ + +A
Sbjct: 154 PAARRANIDFERSERERIHFETATRVMNYEIQAERAEVMLSKNKKLTPAEARRLRRADLKNNYYGLIEVTEEDEGVRADYTWDQEPELITFSAYGVLYNWHLPMGLLMREALGRSHNYVHRMPPPGAFQKHFKESHEDA 292
BLAST of mRNA_M-pyrifera_M_contig999.22976.1 vs. uniprot
Match: D8LIY6_ECTSI (Haloacid dehalogenase-like hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY6_ECTSI) HSP 1 Score: 168 bits (426), Expect = 3.070e-48 Identity = 81/139 (58.27%), Postives = 107/139 (76.98%), Query Frame = 1 Query: 1 PAARRANIDFERSERERIHFETATRVMNYQIQADRLKL----SQGLEPPETKRMPRMEIPNDLYEEDDFKVRAAGIEAVYAWDQSPKLITFSAYGVLYNWHLPIGLIMREALGRAHDYVHRLPSPASFEKNFRTAFNEA 405
PAARRANIDFERSERERIHFETATRVMNY+IQA+R ++ ++ L P E +R+ R + N+ Y + G+ A Y WDQ P+L+TFSAYGVLYNWHLP+GL+MREALGR+H+Y+HR+P P +F+K+F+ + +A
Sbjct: 20 PAARRANIDFERSERERIHFETATRVMNYEIQAERAEVMLSENKKLTPAEARRLRRAALKNNYYGLIEVTEEDEGVMADYTWDQEPELVTFSAYGVLYNWHLPMGLLMREALGRSHNYIHRMPPPGAFQKHFKESHEDA 158
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 2 |
Model size | 408 |
Cds size | 408 |
Stop | 1 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622816916.3630404-CDS-M-pyrifera_M_contig999:334..532 | 1622816916.3630404-CDS-M-pyrifera_M_contig999:334..532 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig999 335..532 - |
1692278253.627014-CDS-M-pyrifera_M_contig999:334..532 | 1692278253.627014-CDS-M-pyrifera_M_contig999:334..532 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig999 335..532 - |
1622816916.3738892-CDS-M-pyrifera_M_contig999:1817..2027 | 1622816916.3738892-CDS-M-pyrifera_M_contig999:1817..2027 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig999 1818..2027 - |
1692278253.637886-CDS-M-pyrifera_M_contig999:1817..2027 | 1692278253.637886-CDS-M-pyrifera_M_contig999:1817..2027 | Macrocystis pyrifera P11B4 male | CDS | M-pyrifera_M_contig999 1818..2027 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_M-pyrifera_M_contig999.22976.1 >prot_M-pyrifera_M_contig999.22976.1 ID=prot_M-pyrifera_M_contig999.22976.1|Name=mRNA_M-pyrifera_M_contig999.22976.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
PAARRANIDFERSERERIHFETATRVMNYQIQADRLKLSQGLEPPETKRM PRMEIPNDLYEEDDFKVRAAGIEAVYAWDQSPKLITFSAYGVLYNWHLPI GLIMREALGRAHDYVHRLPSPASFEKNFRTAFNEA* back to topmRNA from alignment at M-pyrifera_M_contig999:335..2027- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_M-pyrifera_M_contig999.22976.1 ID=mRNA_M-pyrifera_M_contig999.22976.1|Name=mRNA_M-pyrifera_M_contig999.22976.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1693bp|location=Sequence derived from alignment at M-pyrifera_M_contig999:335..2027- (Macrocystis pyrifera P11B4 male) CCCGCGGCACGACGAGCCAACATCGACTTTGAGCGGTCGGAGCGCGAGCG
CATCCACTTCGAGACGGCGACTCGCGTGATGAACTACCAGATTCAGGCCG
ACAGGCTCAAGCTGTCGCAGGGCCTGGAGCCCCCAGAGACGAAGAGAATG
CCGCGGATGGAGATTCCGAATGACCTGTACGAGGAAGACGACTTCAAAGT
GAGGGCGGCGGTGCGGCGGCGGCGGTGGTGGCGGTGGTGGTGGTGGTGGT
GGTGGTGGTGGTGATGGTGGTGGTGGTGGTCGCGGTGATCATGTGGCCGT
CATTGCGGTCGGTCGGTCGGTCGGTCGGTCCATCGGTCGGTGTGATAGTT
GGCCCGCGGCCCCGCTATGTACACTGGTTAAGGTTGCGGCAAGGTCCGCT
GTTATCCCCCCGCCTTAATCATTTTACTGTAGTACTGCAATGTACGTAAA
ACCTAAATCTAACTCTAAATCCAAGTGTTTTGTCGCCATCACGGGAGTCC
AGTCAGTCCCTACAGGGGGCTAATAACCCTTTTTCTAGTAAAACACTATT
ACGGGGGACCATGCAGTAGTAAATAGGACCAAATATTGTTAGAAAAAATA
AGGAAATGTATAGGTTTTTGTGTGTACCGTAGGTCCTATTTACCATGCCC
CCCCCGCGTAGTAGTAATAATAATCCCACGGCAGGGGCAGTTTCAATTAG
TTTTCCCTGTATATAGAATCGTGGTTGTGGTTCGAAAGGAACAGGAACAG
AACGAAATGTCGACCCGCGCGCGCATGCCGGTAGATGGAATCTTCTCTCT
CTCTCTCTCTCTTTCTCTCTCTCTCCGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGAAGGAGGAAAAGGAGGAGGAGGAGGTTAAATGCCTGGAGCC
TCTCGTGTGCATGCCTTCCAGAGTGAACATGCTTGCACGAGTCACCTTCA
CGCATCTTGGTCCTCGGTGTTTGTCGCCGCTGCGAGTCGATGTGGTGTCT
TCAGCTTGTTTTTTTTTTTTGGTCGTTACCCCGCGTACCGAAGTGATCGT
GTGTCTTAGCCGGTGAAACCCCCCGGCGTTGTTTGCAACACTTTTGTCTC
CGGTTTTTCCCACCCCCAGTGCAACTTCCGCCCCCTCGGTACCATATCAC
ACGCAAGATAACGAACCCTCATCGACGAAACTGAGCTGATTGTCTCGACC
ATGGGAGAGGGGAAACGCCGAGCGATGGGTGTATGGAAAGAAAATCTCGC
CGAGATCACGTTTTTCGTGTGCCCCCCCCCCCTCCCCTTAATTTTTGGAG
AAAATCGGTCTGGAATTTATCCCAAAATGTGTGTGTGCTATCTTGCGTGT
TCTGTGCACGGTGCGTTTCGTTGATCAACCCTTCTTATTGTGTTGTGTAA
CTTCGTTCGAGCGCTGTGTAATGCGATCGCGCTCACGCTCTTTCGACTGC
TCGGTGTCGTGTGCCTGCCCCCCCTGTTTCGTTGGCCATATAAAGGGAAT
TGAGGCAGTGTACGCCTGGGACCAAAGCCCCAAGCTCATCACATTCTCCG
CATACGGTGTCCTCTATAACTGGCACCTGCCGATCGGCCTGATCATGAGG
GAGGCTCTGGGCAGGGCCCACGACTACGTCCACCGCCTCCCATCGCCGGC
TTCCTTCGAGAAGAACTTCAGGACCGCCTTCAACGAAGCGTGA back to topCoding sequence (CDS) from alignment at M-pyrifera_M_contig999:335..2027- >mRNA_M-pyrifera_M_contig999.22976.1 ID=mRNA_M-pyrifera_M_contig999.22976.1|Name=mRNA_M-pyrifera_M_contig999.22976.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig999:335..2027- (Macrocystis pyrifera P11B4 male) CCCGCGGCACGACGAGCCAACATCGACTTTGAGCGGTCGGAGCGCGAGCG CATCCACTTCGAGACGGCGACTCGCGTGATGAACTACCAGATTCAGGCCG ACAGGCTCAAGCTGTCGCAGGGCCTGGAGCCCCCAGAGACGAAGAGAATG CCGCGGATGGAGATTCCGAATGACCTGTACGAGGAAGACGACTTCAAAGT GAGGGCGGCGCCCGCGGCACGACGAGCCAACATCGACTTTGAGCGGTCGG AGCGCGAGCGCATCCACTTCGAGACGGCGACTCGCGTGATGAACTACCAG ATTCAGGCCGACAGGCTCAAGCTGTCGCAGGGCCTGGAGCCCCCAGAGAC GAAGAGAATGCCGCGGATGGAGATTCCGAATGACCTGTACGAGGAAGACG ACTTCAAAGTGAGGGCGGCGGGAATTGAGGCAGTGTACGCCTGGGACCAA AGCCCCAAGCTCATCACATTCTCCGCATACGGTGTCCTCTATAACTGGCA CCTGCCGATCGGCCTGATCATGAGGGAGGCTCTGGGCAGGGCCCACGACT ACGTCCACCGCCTCCCATCGCCGGCTTCCTTCGAGAAGAACTTCAGGACC GCCTTCAACGAAGCGTGAGGAATTGAGGCAGTGTACGCCTGGGACCAAAG CCCCAAGCTCATCACATTCTCCGCATACGGTGTCCTCTATAACTGGCACC TGCCGATCGGCCTGATCATGAGGGAGGCTCTGGGCAGGGCCCACGACTAC GTCCACCGCCTCCCATCGCCGGCTTCCTTCGAGAAGAACTTCAGGACCGC CTTCAACGAAGCGTGA back to top
|