mRNA_M-pyrifera_M_contig999.22976.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig999.22976.1
Unique NamemRNA_M-pyrifera_M_contig999.22976.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
[Close]
BLAST of mRNA_M-pyrifera_M_contig999.22976.1 vs. uniprot
Match: A0A6H5JZ79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ79_9PHAE)

HSP 1 Score: 171 bits (434), Expect = 2.570e-48
Identity = 84/139 (60.43%), Postives = 107/139 (76.98%), Query Frame = 1 
Query:    1 PAARRANIDFERSERERIHFETATRVMNYQIQADR----LKLSQGLEPPETKRMPRMEIPNDLYEEDDFKVRAAGIEAVYAWDQSPKLITFSAYGVLYNWHLPIGLIMREALGRAHDYVHRLPSPASFEKNFRTAFNEA 405
            PAARRANIDFERSERERIHFETATRVMNY+IQA+R    L  ++ L P E +R+ R ++ N+ Y   +      G+ A Y WDQ P+LITFSAYGVLYNWHLP+GL+MREALGR+H+YVHR+P P +F+K+F+ +  +A
Sbjct:  154 PAARRANIDFERSERERIHFETATRVMNYEIQAERAEVMLSKNKKLTPAEARRLRRADLKNNYYGLIEVTEEDEGVRADYTWDQEPELITFSAYGVLYNWHLPMGLLMREALGRSHNYVHRMPPPGAFQKHFKESHEDA 292
[Close]
BLAST of mRNA_M-pyrifera_M_contig999.22976.1 vs. uniprot
Match: D8LIY6_ECTSI (Haloacid dehalogenase-like hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY6_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 3.070e-48
Identity = 81/139 (58.27%), Postives = 107/139 (76.98%), Query Frame = 1 
Query:    1 PAARRANIDFERSERERIHFETATRVMNYQIQADRLKL----SQGLEPPETKRMPRMEIPNDLYEEDDFKVRAAGIEAVYAWDQSPKLITFSAYGVLYNWHLPIGLIMREALGRAHDYVHRLPSPASFEKNFRTAFNEA 405
            PAARRANIDFERSERERIHFETATRVMNY+IQA+R ++    ++ L P E +R+ R  + N+ Y   +      G+ A Y WDQ P+L+TFSAYGVLYNWHLP+GL+MREALGR+H+Y+HR+P P +F+K+F+ +  +A
Sbjct:   20 PAARRANIDFERSERERIHFETATRVMNYEIQAERAEVMLSENKKLTPAEARRLRRAALKNNYYGLIEVTEEDEGVMADYTWDQEPELVTFSAYGVLYNWHLPMGLLMREALGRSHNYIHRMPPPGAFQKHFKESHEDA 158
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig999.22976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JZ79_9PHAE2.570e-4860.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIY6_ECTSI3.070e-4858.27Haloacid dehalogenase-like hydrolase n=1 Tax=Ectoc... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig999contigM-pyrifera_M_contig999:335..2027 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size408
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816916.3630404-CDS-M-pyrifera_M_contig999:334..5321622816916.3630404-CDS-M-pyrifera_M_contig999:334..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig999 335..532 -
1692278253.627014-CDS-M-pyrifera_M_contig999:334..5321692278253.627014-CDS-M-pyrifera_M_contig999:334..532Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig999 335..532 -
1622816916.3738892-CDS-M-pyrifera_M_contig999:1817..20271622816916.3738892-CDS-M-pyrifera_M_contig999:1817..2027Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig999 1818..2027 -
1692278253.637886-CDS-M-pyrifera_M_contig999:1817..20271692278253.637886-CDS-M-pyrifera_M_contig999:1817..2027Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig999 1818..2027 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig999.22976.1prot_M-pyrifera_M_contig999.22976.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig999 335..2027 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig999.22976.1

>prot_M-pyrifera_M_contig999.22976.1 ID=prot_M-pyrifera_M_contig999.22976.1|Name=mRNA_M-pyrifera_M_contig999.22976.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=136bp
PAARRANIDFERSERERIHFETATRVMNYQIQADRLKLSQGLEPPETKRM
PRMEIPNDLYEEDDFKVRAAGIEAVYAWDQSPKLITFSAYGVLYNWHLPI
GLIMREALGRAHDYVHRLPSPASFEKNFRTAFNEA*
back to top

mRNA from alignment at M-pyrifera_M_contig999:335..2027-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig999.22976.1 ID=mRNA_M-pyrifera_M_contig999.22976.1|Name=mRNA_M-pyrifera_M_contig999.22976.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=1693bp|location=Sequence derived from alignment at M-pyrifera_M_contig999:335..2027- (Macrocystis pyrifera P11B4 male)
CCCGCGGCACGACGAGCCAACATCGACTTTGAGCGGTCGGAGCGCGAGCG
CATCCACTTCGAGACGGCGACTCGCGTGATGAACTACCAGATTCAGGCCG
ACAGGCTCAAGCTGTCGCAGGGCCTGGAGCCCCCAGAGACGAAGAGAATG
CCGCGGATGGAGATTCCGAATGACCTGTACGAGGAAGACGACTTCAAAGT
GAGGGCGGCGGTGCGGCGGCGGCGGTGGTGGCGGTGGTGGTGGTGGTGGT
GGTGGTGGTGGTGATGGTGGTGGTGGTGGTCGCGGTGATCATGTGGCCGT
CATTGCGGTCGGTCGGTCGGTCGGTCGGTCCATCGGTCGGTGTGATAGTT
GGCCCGCGGCCCCGCTATGTACACTGGTTAAGGTTGCGGCAAGGTCCGCT
GTTATCCCCCCGCCTTAATCATTTTACTGTAGTACTGCAATGTACGTAAA
ACCTAAATCTAACTCTAAATCCAAGTGTTTTGTCGCCATCACGGGAGTCC
AGTCAGTCCCTACAGGGGGCTAATAACCCTTTTTCTAGTAAAACACTATT
ACGGGGGACCATGCAGTAGTAAATAGGACCAAATATTGTTAGAAAAAATA
AGGAAATGTATAGGTTTTTGTGTGTACCGTAGGTCCTATTTACCATGCCC
CCCCCGCGTAGTAGTAATAATAATCCCACGGCAGGGGCAGTTTCAATTAG
TTTTCCCTGTATATAGAATCGTGGTTGTGGTTCGAAAGGAACAGGAACAG
AACGAAATGTCGACCCGCGCGCGCATGCCGGTAGATGGAATCTTCTCTCT
CTCTCTCTCTCTTTCTCTCTCTCTCCGAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGAAGGAGGAAAAGGAGGAGGAGGAGGTTAAATGCCTGGAGCC
TCTCGTGTGCATGCCTTCCAGAGTGAACATGCTTGCACGAGTCACCTTCA
CGCATCTTGGTCCTCGGTGTTTGTCGCCGCTGCGAGTCGATGTGGTGTCT
TCAGCTTGTTTTTTTTTTTTGGTCGTTACCCCGCGTACCGAAGTGATCGT
GTGTCTTAGCCGGTGAAACCCCCCGGCGTTGTTTGCAACACTTTTGTCTC
CGGTTTTTCCCACCCCCAGTGCAACTTCCGCCCCCTCGGTACCATATCAC
ACGCAAGATAACGAACCCTCATCGACGAAACTGAGCTGATTGTCTCGACC
ATGGGAGAGGGGAAACGCCGAGCGATGGGTGTATGGAAAGAAAATCTCGC
CGAGATCACGTTTTTCGTGTGCCCCCCCCCCCTCCCCTTAATTTTTGGAG
AAAATCGGTCTGGAATTTATCCCAAAATGTGTGTGTGCTATCTTGCGTGT
TCTGTGCACGGTGCGTTTCGTTGATCAACCCTTCTTATTGTGTTGTGTAA
CTTCGTTCGAGCGCTGTGTAATGCGATCGCGCTCACGCTCTTTCGACTGC
TCGGTGTCGTGTGCCTGCCCCCCCTGTTTCGTTGGCCATATAAAGGGAAT
TGAGGCAGTGTACGCCTGGGACCAAAGCCCCAAGCTCATCACATTCTCCG
CATACGGTGTCCTCTATAACTGGCACCTGCCGATCGGCCTGATCATGAGG
GAGGCTCTGGGCAGGGCCCACGACTACGTCCACCGCCTCCCATCGCCGGC
TTCCTTCGAGAAGAACTTCAGGACCGCCTTCAACGAAGCGTGA
back to top

Coding sequence (CDS) from alignment at M-pyrifera_M_contig999:335..2027-

>mRNA_M-pyrifera_M_contig999.22976.1 ID=mRNA_M-pyrifera_M_contig999.22976.1|Name=mRNA_M-pyrifera_M_contig999.22976.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=816bp|location=Sequence derived from alignment at M-pyrifera_M_contig999:335..2027- (Macrocystis pyrifera P11B4 male)
CCCGCGGCACGACGAGCCAACATCGACTTTGAGCGGTCGGAGCGCGAGCG
CATCCACTTCGAGACGGCGACTCGCGTGATGAACTACCAGATTCAGGCCG
ACAGGCTCAAGCTGTCGCAGGGCCTGGAGCCCCCAGAGACGAAGAGAATG
CCGCGGATGGAGATTCCGAATGACCTGTACGAGGAAGACGACTTCAAAGT
GAGGGCGGCGCCCGCGGCACGACGAGCCAACATCGACTTTGAGCGGTCGG
AGCGCGAGCGCATCCACTTCGAGACGGCGACTCGCGTGATGAACTACCAG
ATTCAGGCCGACAGGCTCAAGCTGTCGCAGGGCCTGGAGCCCCCAGAGAC
GAAGAGAATGCCGCGGATGGAGATTCCGAATGACCTGTACGAGGAAGACG
ACTTCAAAGTGAGGGCGGCGGGAATTGAGGCAGTGTACGCCTGGGACCAA
AGCCCCAAGCTCATCACATTCTCCGCATACGGTGTCCTCTATAACTGGCA
CCTGCCGATCGGCCTGATCATGAGGGAGGCTCTGGGCAGGGCCCACGACT
ACGTCCACCGCCTCCCATCGCCGGCTTCCTTCGAGAAGAACTTCAGGACC
GCCTTCAACGAAGCGTGAGGAATTGAGGCAGTGTACGCCTGGGACCAAAG
CCCCAAGCTCATCACATTCTCCGCATACGGTGTCCTCTATAACTGGCACC
TGCCGATCGGCCTGATCATGAGGGAGGCTCTGGGCAGGGCCCACGACTAC
GTCCACCGCCTCCCATCGCCGGCTTCCTTCGAGAAGAACTTCAGGACCGC
CTTCAACGAAGCGTGA
back to top