prot_M-pyrifera_M_contig99249.22831.1 (polypeptide) Macrocystis pyrifera P11B4 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_M-pyrifera_M_contig99249.22831.1
Unique Nameprot_M-pyrifera_M_contig99249.22831.1
Typepolypeptide
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Sequence length37
Homology
BLAST of mRNA_M-pyrifera_M_contig99249.22831.1 vs. uniprot
Match: A0A6H5JHB7_9PHAE (C2H2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHB7_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.220e-9
Identity = 27/33 (81.82%), Postives = 32/33 (96.97%), Query Frame = 0
Query:    1 QGILSKNKDLKKAFGTENQLEACKIILDKGEMQ 33
            +G+L+KNKDL KAFGT+NQLEAC+IILDKGEMQ
Sbjct:   64 KGVLAKNKDLMKAFGTDNQLEACRIILDKGEMQ 96          
BLAST of mRNA_M-pyrifera_M_contig99249.22831.1 vs. uniprot
Match: A0A0B2VZK2_TOXCA (Ribosome maturation protein SBDS n=4 Tax=Ascaridoidea TaxID=33256 RepID=A0A0B2VZK2_TOXCA)

HSP 1 Score: 47.4 bits (111), Expect = 4.720e-5
Identity = 19/33 (57.58%), Postives = 29/33 (87.88%), Query Frame = 0
Query:    1 QGILSKNKDLKKAFGTENQLEACKIILDKGEMQ 33
            +G+++K ++L  AFGTE+QLE CK+ILDKG++Q
Sbjct:   64 KGLIAKREELNAAFGTEDQLEICKLILDKGDLQ 96          
BLAST of mRNA_M-pyrifera_M_contig99249.22831.1 vs. uniprot
Match: UPI0001CBA9C6 (ribosome maturation protein SBDS-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0001CBA9C6)

HSP 1 Score: 47.0 bits (110), Expect = 6.480e-5
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 0
Query:    1 QGILSKNKDLKKAFGTENQLEACKIILDKGEMQARER 37
            +G +SK +DLK+AFGTE+Q E CK+IL KGE Q  E+
Sbjct:   62 KGQVSKKEDLKRAFGTEDQTEICKMILAKGEFQVSEK 98          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig99249.22831.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JHB7_9PHAE1.220e-981.82C2H2-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A0B2VZK2_TOXCA4.720e-557.58Ribosome maturation protein SBDS n=4 Tax=Ascaridoi... [more]
UPI0001CBA9C66.480e-559.46ribosome maturation protein SBDS-like n=1 Tax=Sacc... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Macrocystis pyrifera male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019783Ribosome maturation protein SBDS, N-terminalPFAMPF01172SBDScoord: 2..36
e-value: 4.9E-8
score: 32.9
IPR036786Ribosome maturation protein SBDS, N-terminal domain superfamilyGENE3D3.30.1250.10coord: 1..33
e-value: 4.4E-7
score: 31.6
IPR036786Ribosome maturation protein SBDS, N-terminal domain superfamilySUPERFAMILY89895FYSH domaincoord: 1..33

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig99249contigM-pyrifera_M_contig99249:171..281 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Macrocystis pyrifera male2022-09-29
Diamond blastp: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-16
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig99249.22831.1mRNA_M-pyrifera_M_contig99249.22831.1Macrocystis pyrifera P11B4 malemRNAM-pyrifera_M_contig99249 171..281 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_M-pyrifera_M_contig99249.22831.1 ID=prot_M-pyrifera_M_contig99249.22831.1|Name=mRNA_M-pyrifera_M_contig99249.22831.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=37bp
QGILSKNKDLKKAFGTENQLEACKIILDKGEMQARER
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019783Ribosome_mat_SBDS_N
IPR036786Ribosome_mat_SBDS_N_sf