mRNA_M-pyrifera_M_contig98300.22643.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig98300.22643.1
Unique NamemRNA_M-pyrifera_M_contig98300.22643.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
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BLAST of mRNA_M-pyrifera_M_contig98300.22643.1 vs. uniprot
Match: UPI000719E09A (biogenesis of lysosome-related organelles complex 1 subunit 4-like n=1 Tax=Priapulus caudatus TaxID=37621 RepID=UPI000719E09A)

HSP 1 Score: 50.4 bits (119), Expect = 7.630e-5
Identity = 26/78 (33.33%), Postives = 54/78 (69.23%), Query Frame = 1 
Query:  130 VEARLTKMDELTSLVAGVRAESARTFGEALPELVEQARQVERIFGLVEELEGFMRQVAHSAREMDLAIARAEAGQASL 363
            V+  LT+++E +SL+  VRA+SA    E +P ++ + R++E++F  V++LE F+  V  + ++++ A+ +AE+ ++SL
Sbjct:   58 VDEMLTRLEEFSSLLDIVRADSALCLEETMPRILAKRREMEQVFASVDQLEAFVATVRLNLQQLEEAVEKAESERSSL 135
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig98300.22643.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI000719E09A7.630e-533.33biogenesis of lysosome-related organelles complex ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig98300contigM-pyrifera_M_contig98300:295..663 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size363
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816900.82416-UTR-M-pyrifera_M_contig98300:294..3001622816900.82416-UTR-M-pyrifera_M_contig98300:294..300Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig98300 295..300 +
1692278244.8009024-UTR-M-pyrifera_M_contig98300:294..3001692278244.8009024-UTR-M-pyrifera_M_contig98300:294..300Macrocystis pyrifera P11B4 maleUTRM-pyrifera_M_contig98300 295..300 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816900.8377442-CDS-M-pyrifera_M_contig98300:300..6631622816900.8377442-CDS-M-pyrifera_M_contig98300:300..663Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98300 301..663 +
1692278244.8131597-CDS-M-pyrifera_M_contig98300:300..6631692278244.8131597-CDS-M-pyrifera_M_contig98300:300..663Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig98300 301..663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig98300.22643.1prot_M-pyrifera_M_contig98300.22643.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig98300 301..663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig98300.22643.1

>prot_M-pyrifera_M_contig98300.22643.1 ID=prot_M-pyrifera_M_contig98300.22643.1|Name=mRNA_M-pyrifera_M_contig98300.22643.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=121bp
MATEGAIAGAEGRLEELAESYGGYVGMGGLAVLQARQWAAQVEARLTKMD
ELTSLVAGVRAESARTFGEALPELVEQARQVERIFGLVEELEGFMRQVAH
SAREMDLAIARAEAGQASLQR
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mRNA from alignment at M-pyrifera_M_contig98300:295..663+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig98300.22643.1 ID=mRNA_M-pyrifera_M_contig98300.22643.1|Name=mRNA_M-pyrifera_M_contig98300.22643.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=369bp|location=Sequence derived from alignment at M-pyrifera_M_contig98300:295..663+ (Macrocystis pyrifera P11B4 male)
GGTGATATGGCAACAGAAGGGGCGATTGCGGGTGCAGAGGGGCGGTTGGA
GGAGCTGGCGGAGAGCTACGGGGGCTACGTGGGCATGGGAGGGCTGGCGG
TGCTCCAGGCGCGACAGTGGGCGGCGCAGGTGGAGGCCCGGCTCACGAAG
ATGGACGAGCTCACGTCCCTGGTCGCCGGTGTCAGGGCAGAGTCTGCACG
CACCTTCGGAGAGGCGCTTCCCGAGCTGGTGGAGCAGGCGCGGCAGGTGG
AGCGCATCTTCGGCCTCGTGGAGGAGCTCGAGGGCTTCATGCGCCAGGTG
GCCCACTCTGCACGCGAAATGGACCTCGCCATTGCACGGGCAGAGGCCGG
GCAGGCGTCGCTGCAGCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig98300:295..663+

>mRNA_M-pyrifera_M_contig98300.22643.1 ID=mRNA_M-pyrifera_M_contig98300.22643.1|Name=mRNA_M-pyrifera_M_contig98300.22643.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=726bp|location=Sequence derived from alignment at M-pyrifera_M_contig98300:295..663+ (Macrocystis pyrifera P11B4 male)
ATGGCAACAGAAGGGGCGATTGCGGGTGCAGAGGGGCGGTTGGAGGAGCT
GGCGGAGAGCTACGGGGGCTACGTGGGCATGGGAGGGCTGGCGGTGCTCC
AGGCGCGACAGTGGGCGGCGCAGGTGGAGGCCCGGCTCACGAAGATGGAC
GAGCTCACGTCCCTGGTCGCCGGTGTCAGGGCAGAGTCTGCACGCACCTT
CGGAGAGGCGCTTCCCGAGCTGGTGGAGCAGGCGCGGCAGGTGGAGCGCA
TCTTCGGCCTCGTGGAGGAGCTCGAGGGCTTCATGCGCCAGGTGGCCCAC
TCTGCACGCGAAATGGACCTCGCCATTGCACGGGCAGAGGCCGGGCAGGC
GTCGCTGCAGCGCATGGCAACAGAAGGGGCGATTGCGGGTGCAGAGGGGC
GGTTGGAGGAGCTGGCGGAGAGCTACGGGGGCTACGTGGGCATGGGAGGG
CTGGCGGTGCTCCAGGCGCGACAGTGGGCGGCGCAGGTGGAGGCCCGGCT
CACGAAGATGGACGAGCTCACGTCCCTGGTCGCCGGTGTCAGGGCAGAGT
CTGCACGCACCTTCGGAGAGGCGCTTCCCGAGCTGGTGGAGCAGGCGCGG
CAGGTGGAGCGCATCTTCGGCCTCGTGGAGGAGCTCGAGGGCTTCATGCG
CCAGGTGGCCCACTCTGCACGCGAAATGGACCTCGCCATTGCACGGGCAG
AGGCCGGGCAGGCGTCGCTGCAGCGC
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