mRNA_M-pyrifera_M_contig97940.22559.1 (mRNA) Macrocystis pyrifera P11B4 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_M-pyrifera_M_contig97940.22559.1
Unique NamemRNA_M-pyrifera_M_contig97940.22559.1
TypemRNA
OrganismMacrocystis pyrifera P11B4 male (Macrocystis pyrifera P11B4 male (Giant kelp))
Homology
BLAST of mRNA_M-pyrifera_M_contig97940.22559.1 vs. uniprot
Match: A0A7V3DV50_9BACT (Glycosyltransferase n=1 Tax=bacterium TaxID=1869227 RepID=A0A7V3DV50_9BACT)

HSP 1 Score: 122 bits (306), Expect = 1.750e-30
Identity = 71/182 (39.01%), Postives = 93/182 (51.10%), Query Frame = 1
Query:    4 WVNSDDYLLPGALATLAAHIEQNPHERVFMSNHVRVASDGSTIARIVPNYSPWKLRHWWWAALQLWQPGLVFHRSAFETAGPLDARLHYAMDFDFFLKLQDVQRFHYLDADLVAFRVHDAQKGHANEVPFIEERIAATNAYWQNRSALRAVFYRYLLYFVE-GSLVFVEALRQYESGDAATA 546
            WVNSDDYLLPGAL    A +   P      SN + V + G  I R   +YS     HWW   +   Q G  F R  ++  GP D  L+YAMD+DF+LKL D   F++LD  LVA+R+H+A K    ++PF  E +     YW  R       YR LL     G  +    + Q+ESG  A+A
Sbjct:   91 WVNSDDYLLPGALEKFLAFVHSVPAATFVFSNCLYVDTTGREIERKRASYSRDGFFHWWRRGVGFAQTGTFFRRELWQAHGPFDVSLNYAMDYDFWLKLTDSTEFYFLDDYLVAYRLHEASKTGEGQLPFAREMVQICQRYWDARGGWAKWKYRLLLRLAAYGRQLMFSGIEQWESGRRASA 272          
BLAST of mRNA_M-pyrifera_M_contig97940.22559.1 vs. uniprot
Match: A0A353GGC8_9BACT (Glyco_trans_2-like domain-containing protein n=1 Tax=Candidatus Sumerlaeota bacterium TaxID=2107588 RepID=A0A353GGC8_9BACT)

HSP 1 Score: 115 bits (288), Expect = 1.320e-27
Identity = 63/185 (34.05%), Postives = 95/185 (51.35%), Query Frame = 1
Query:    1 IWVNSDDYLLPGALATLAAHIEQNPHERVFMSN--HVRVASDGSTIARIVPNYSPWKLRHWWWAALQLWQPGLVFHRSAFETAGPLDARLHYAMDFDFFLKLQDVQRFHYLDADLVAFRVHDAQKGHANEVPFIEERIAATNAYWQNRSALRAVFYRYLLYFVEGSLVFVEALRQYESGDAATAR 549
            +W+NSDD+LLPGAL  L A +E+ P      S+   V V+   + + +   +  P  L +WW       QPG  F ++ +E  GP D  LHY MDFDF+LK+ D  +FHY+   L  +R+HDA K      PF  E +     Y + +       +R+LL  +    + +E LR  ++GD   A+
Sbjct:  117 VWINSDDFLLPGALDKLRAFLEKTPDAEFIYSDCQFVNVSGRSTQVRKAFYHEDPSALYYWWRRGAGFGQPGSFFPKALWEKYGPFDESLHYTMDFDFWLKISDYVKFHYIPECLATYRLHDASKTLEGWKPFTREHMKVERRYMEAKGGWLKWKFRWLLELMYAKSLILEGLRCRDAGDKKRAK 301          
BLAST of mRNA_M-pyrifera_M_contig97940.22559.1 vs. uniprot
Match: A0A846NZT7_9ARCH (Glycosyltransferase n=1 Tax=Candidatus Aenigmarchaeota archaeon TaxID=2093792 RepID=A0A846NZT7_9ARCH)

HSP 1 Score: 75.9 bits (185), Expect = 5.490e-13
Identity = 49/158 (31.01%), Postives = 75/158 (47.47%), Query Frame = 1
Query:    4 WVNSDDYLLPGALATLAAHIEQNPHERVFMSNHVRVASD-GSTIARIVPNYSPWK-LRHWWWAALQLWQPGLVFHRSAFETAGPLDARLHYAMDFDFFLKLQDVQRFHYLDADLVAFRVHDAQKGHANEVPFIEERIAATNAYWQNRSALRAVFYRYL 471
            W+NSDD   PGA  T+ A + +  + +  +S    V  D G  +      +S  K L  +W     + QP + F+R      G LD +LHY MD++F+L++   ++ HY++  L   RVHD  K       F  E    +  YW   S L   +YR+L
Sbjct:  120 WLNSDDCYEPGAFFTIVAELNK-VYGKYIVSGDCSVIDDRGDRVGYCKGRFSDHKDLIKYWDRDYTIPQPSVFFYRDILHECGYLDEKLHYGMDYEFWLRISKHRKIHYIEKPLAKIRVHDRAKSSPGYEVFEREWFRVSKKYWG--SLLSVNYYRHL 274          
BLAST of mRNA_M-pyrifera_M_contig97940.22559.1 vs. uniprot
Match: A0A1I1WIL1_9ACTN (Glycosyltransferase involved in cell wall bisynthesis n=2 Tax=Blastococcus sp. DSM 46838 TaxID=1798228 RepID=A0A1I1WIL1_9ACTN)

HSP 1 Score: 74.3 bits (181), Expect = 8.410e-13
Identity = 48/126 (38.10%), Postives = 63/126 (50.00%), Query Frame = 1
Query:    4 WVNSDDYLLPGALATLAAHIEQNPHERVFMSNHVRVASDGSTIARIVPNYSPWKLRHWWWAALQLW----QPGLVFHRSAFETAGPLDARLHYAMDFDFFLKLQDVQRFHYLDADLVAFRVHDAQK 369
            W+NSDDYLLPGAL  +  +   +P       + V V  DG+ I R V  Y     R    A L L     QP   + RS  +  G LD  LHY MD+D++L+L    R   +D  +  FR+HDA K
Sbjct:   85 WLNSDDYLLPGALQAVGEYFAAHPEATWVTGDGVIVDVDGTPIQRPVRTYKQVLRRFGPSAYLGLANGIVQPATFWRRSVHDELGYLDESLHYTMDYDWWLRLLTTGRPGKIDRPMCGFRIHDASK 210          
BLAST of mRNA_M-pyrifera_M_contig97940.22559.1 vs. uniprot
Match: A0A533SDG1_9BACT (Glycosyltransferase n=1 Tax=bacterium TaxID=1869227 RepID=A0A533SDG1_9BACT)

HSP 1 Score: 75.9 bits (185), Expect = 1.100e-12
Identity = 50/177 (28.25%), Postives = 86/177 (48.59%), Query Frame = 1
Query:    4 WVNSDDYLLPGALATLAAHIEQNPHERVFMSNHVRVASDGSTIARIVPNYSPW-KLRHWWWAALQLWQPGLVFHRSAFETAGPLDARLHYAMDFDFFLKLQDVQRFHYLDADLVAFRVH-DAQKGHANEVPFIEERIAATNAYWQNRSALRAVFYRYLLYFVEG-SLVFVEALRQYE 525
            W+NSDD+  PGA   +A     NP + + M +   V +DG    R++     + +LR +W +     QP + F R+  +  G LD  LH+AMD+D +++     R +++D  L  +R H DA+ G  +   FI +     + Y   + ++    Y Y  Y  E  S V  +  +++E
Sbjct:  953 WINSDDWYEPGAFKAVADFFTANPGKNIVMGDCNLVDADGVIFDRVINQERGFDELRKYWISRSIPTQPAIFFRRNLLDEFGLLDESLHFAMDYDLWMRFSQKNRLYHIDRTLANYRFHSDAKGGDQDWSKFIPDCRIVYDRYSPPQVSVIIPCYNYGQYLAEAVSSVITQTYQEFE 1129          
BLAST of mRNA_M-pyrifera_M_contig97940.22559.1 vs. uniprot
Match: A0A5A9XTA1_9DELT (Glycosyltransferase n=1 Tax=Oryzomonas rubra TaxID=2509454 RepID=A0A5A9XTA1_9DELT)

HSP 1 Score: 71.2 bits (173), Expect = 1.730e-11
Identity = 40/99 (40.40%), Postives = 51/99 (51.52%), Query Frame = 1
Query:    4 WVNSDDYLLPGALATLAAHIEQNPHERVFMSNHVRVASDGSTIARIVPNYSPWKLRHWWWAALQLWQPGLVFHRSAFETAGPLDARLHYAMDFDFFLKL 300
            W+NSDDYLLPGALAT+AA   +NP    F+     V   G  +    P     +  + W       QP   F R A+E AG LD  +H AMD D +LK+
Sbjct:   93 WLNSDDYLLPGALATIAAMYRENPTAGAFVGGGEYVDVKGKVLLSKEPAEVTLESLYDWLDIFHFMQPSCFFTREAWERAGGLDESVHVAMDVDLWLKI 191          
BLAST of mRNA_M-pyrifera_M_contig97940.22559.1 vs. uniprot
Match: A0A023XSL4_BRAJP (Glyco_trans_2-like domain-containing protein n=35 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A023XSL4_BRAJP)

HSP 1 Score: 70.5 bits (171), Expect = 4.280e-11
Identity = 44/124 (35.48%), Postives = 70/124 (56.45%), Query Frame = 1
Query:    4 WVNSDDYLLPGALATLAAHIEQNPHERVFMSNHVRVASDGSTIAR-IVPNYSPWKLRHWWWAALQLWQPGLVFHRSAFETAGPLDARLHYAMDFDFFLKLQDVQ-RFHYLDADLVAFRVHDAQK 369
            ++NSDD LLPGALA +A +   +P+  V   + V V  +G  + R ++P +    L++    A  + Q  + + +  ++  GP+D   HYAMD+DF L+ Q  + +F  L   L  FR+HDAQK
Sbjct:  157 YLNSDDMLLPGALAYVADYFMSHPNVDVVYGHRVFVDREGLEVGRAVLPPHDGKALQY----ADYIPQETMFWRKRVWDRIGPIDESFHYAMDWDFILRAQAAECKFVRLPRFLACFRIHDAQK 276          
BLAST of mRNA_M-pyrifera_M_contig97940.22559.1 vs. uniprot
Match: A0A1Y2JEV4_BRAJP (Glycosyltransferase n=9 Tax=Bradyrhizobium TaxID=374 RepID=A0A1Y2JEV4_BRAJP)

HSP 1 Score: 70.5 bits (171), Expect = 4.280e-11
Identity = 44/124 (35.48%), Postives = 69/124 (55.65%), Query Frame = 1
Query:    4 WVNSDDYLLPGALATLAAHIEQNPHERVFMSNHVRVASDGSTIAR-IVPNYSPWKLRHWWWAALQLWQPGLVFHRSAFETAGPLDARLHYAMDFDFFLKLQDVQ-RFHYLDADLVAFRVHDAQK 369
            ++NSDD LLPGALA +A +   +P   +   + V V  +G  + R ++P +    L++    A  + Q  + + +  +E  GP+D   HYAMD+DF L+ Q  + +F  L   L  FR+HDAQK
Sbjct:  157 YLNSDDMLLPGALAYVADYFMSHPDVDIVYGHRVFVDREGLEVGRAVLPPHDGKALQY----ADYIPQETMFWRKRVWERIGPIDESFHYAMDWDFILRAQAAEFKFVRLPRFLACFRIHDAQK 276          
BLAST of mRNA_M-pyrifera_M_contig97940.22559.1 vs. uniprot
Match: UPI0003FB657F (glycosyltransferase n=1 Tax=Bradyrhizobium TaxID=374 RepID=UPI0003FB657F)

HSP 1 Score: 70.5 bits (171), Expect = 4.320e-11
Identity = 44/124 (35.48%), Postives = 69/124 (55.65%), Query Frame = 1
Query:    4 WVNSDDYLLPGALATLAAHIEQNPHERVFMSNHVRVASDGSTIAR-IVPNYSPWKLRHWWWAALQLWQPGLVFHRSAFETAGPLDARLHYAMDFDFFLKLQDVQ-RFHYLDADLVAFRVHDAQK 369
            ++NSDD LLPGALA +A +   +P   +   + V V  +G  + R ++P +    L++    A  + Q  + + +  +E  GP+D   HYAMD+DF L+ Q  + +F  L   L  FR+HDAQK
Sbjct:  157 YLNSDDMLLPGALAYVADYFMSHPDVDIVYGHRVFVDREGLEVGRAVLPPHDGKALQY----ADYIPQETMFWRKRVWERIGPIDESFHYAMDWDFILRAQAAEFKFVRLPRFLACFRIHDAQK 276          
BLAST of mRNA_M-pyrifera_M_contig97940.22559.1 vs. uniprot
Match: A0A160ULQ5_9BRAD (Glycosyl transferase family 2 CDS n=1 Tax=Bradyrhizobium sp. G22 TaxID=1839752 RepID=A0A160ULQ5_9BRAD)

HSP 1 Score: 69.3 bits (168), Expect = 5.720e-11
Identity = 43/124 (34.68%), Postives = 69/124 (55.65%), Query Frame = 1
Query:    4 WVNSDDYLLPGALATLAAHIEQNPHERVFMSNHVRVASDGSTIAR-IVPNYSPWKLRHWWWAALQLWQPGLVFHRSAFETAGPLDARLHYAMDFDFFLKLQDVQ-RFHYLDADLVAFRVHDAQK 369
            ++NSDD LLPGALA +A +   +P   V   + + V  +G  + R ++P +    L++    A  + Q  + + +  ++  GP+D   HYAMD+DF L+ Q  + +F  L   L  FR+HDAQK
Sbjct:   79 YLNSDDMLLPGALAYVANYFMSHPDVDVVYGHRIFVDREGLEVGRAVLPPHDGKALQY----ADYIPQETMFWRKRVWDMIGPIDESFHYAMDWDFILRAQAAEFKFVRLPRFLACFRIHDAQK 198          
The following BLAST results are available for this feature:
BLAST of mRNA_M-pyrifera_M_contig97940.22559.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V3DV50_9BACT1.750e-3039.01Glycosyltransferase n=1 Tax=bacterium TaxID=186922... [more]
A0A353GGC8_9BACT1.320e-2734.05Glyco_trans_2-like domain-containing protein n=1 T... [more]
A0A846NZT7_9ARCH5.490e-1331.01Glycosyltransferase n=1 Tax=Candidatus Aenigmarcha... [more]
A0A1I1WIL1_9ACTN8.410e-1338.10Glycosyltransferase involved in cell wall bisynthe... [more]
A0A533SDG1_9BACT1.100e-1228.25Glycosyltransferase n=1 Tax=bacterium TaxID=186922... [more]
A0A5A9XTA1_9DELT1.730e-1140.40Glycosyltransferase n=1 Tax=Oryzomonas rubra TaxID... [more]
A0A023XSL4_BRAJP4.280e-1135.48Glyco_trans_2-like domain-containing protein n=35 ... [more]
A0A1Y2JEV4_BRAJP4.280e-1135.48Glycosyltransferase n=9 Tax=Bradyrhizobium TaxID=3... [more]
UPI0003FB657F4.320e-1135.48glycosyltransferase n=1 Tax=Bradyrhizobium TaxID=3... [more]
A0A160ULQ5_9BRAD5.720e-1134.68Glycosyl transferase family 2 CDS n=1 Tax=Bradyrhi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
M-pyrifera_M_contig97940contigM-pyrifera_M_contig97940:2..550 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Macrocystis pyrifera male vs UniRef902022-09-19
OGS1.0 of Macrocystis pyrifera P11B4 male2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score72.4
Seed ortholog evalue2.5e-10
Seed eggNOG ortholog319003.Bra1253DRAFT_04696
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0016740,GO:0016757
EggNOG free text desc.Glycosyltransferase like family 2
EggNOG OGs1RB30@1224,2U68Q@28211,3JWR3@41294,COG1216@1,COG1216@2
COG Functional cat.S
Best tax levelBradyrhizobiaceae
Best eggNOG OGNA|NA|NA
Exons1
Model size549
Cds size549
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816896.9039474-CDS-M-pyrifera_M_contig97940:1..5501622816896.9039474-CDS-M-pyrifera_M_contig97940:1..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97940 2..550 +
1692278242.7548368-CDS-M-pyrifera_M_contig97940:1..5501692278242.7548368-CDS-M-pyrifera_M_contig97940:1..550Macrocystis pyrifera P11B4 maleCDSM-pyrifera_M_contig97940 2..550 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_M-pyrifera_M_contig97940.22559.1prot_M-pyrifera_M_contig97940.22559.1Macrocystis pyrifera P11B4 malepolypeptideM-pyrifera_M_contig97940 2..550 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_M-pyrifera_M_contig97940.22559.1

>prot_M-pyrifera_M_contig97940.22559.1 ID=prot_M-pyrifera_M_contig97940.22559.1|Name=mRNA_M-pyrifera_M_contig97940.22559.1|organism=Macrocystis pyrifera P11B4 male|type=polypeptide|length=183bp
IWVNSDDYLLPGALATLAAHIEQNPHERVFMSNHVRVASDGSTIARIVPN
YSPWKLRHWWWAALQLWQPGLVFHRSAFETAGPLDARLHYAMDFDFFLKL
QDVQRFHYLDADLVAFRVHDAQKGHANEVPFIEERIAATNAYWQNRSALR
AVFYRYLLYFVEGSLVFVEALRQYESGDAATAR
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mRNA from alignment at M-pyrifera_M_contig97940:2..550+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_M-pyrifera_M_contig97940.22559.1 ID=mRNA_M-pyrifera_M_contig97940.22559.1|Name=mRNA_M-pyrifera_M_contig97940.22559.1|organism=Macrocystis pyrifera P11B4 male|type=mRNA|length=549bp|location=Sequence derived from alignment at M-pyrifera_M_contig97940:2..550+ (Macrocystis pyrifera P11B4 male)
ATTTGGGTGAACTCCGACGATTACCTGCTCCCGGGTGCCCTGGCCACACT CGCCGCGCACATCGAACAAAACCCGCACGAACGCGTCTTCATGAGTAACC ATGTCCGCGTTGCGAGCGACGGTTCAACGATCGCGCGTATCGTTCCGAAT TACTCACCCTGGAAGCTCCGGCACTGGTGGTGGGCCGCGTTGCAATTGTG GCAACCGGGCCTGGTATTTCATCGATCCGCCTTCGAGACCGCGGGTCCGC TGGACGCGCGACTGCACTACGCAATGGACTTTGATTTCTTTCTCAAGCTC CAGGATGTGCAGCGTTTTCACTACCTGGATGCCGATCTTGTCGCCTTTCG GGTACACGACGCTCAAAAAGGGCACGCTAACGAAGTGCCGTTTATCGAAG AACGGATCGCTGCAACGAACGCGTACTGGCAAAACCGGTCTGCGCTGCGG GCGGTGTTTTACCGATACCTGCTTTATTTCGTCGAAGGATCGCTCGTCTT TGTCGAAGCGTTACGTCAGTACGAAAGCGGCGACGCGGCGACGGCGCGC
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Coding sequence (CDS) from alignment at M-pyrifera_M_contig97940:2..550+

>mRNA_M-pyrifera_M_contig97940.22559.1 ID=mRNA_M-pyrifera_M_contig97940.22559.1|Name=mRNA_M-pyrifera_M_contig97940.22559.1|organism=Macrocystis pyrifera P11B4 male|type=CDS|length=1098bp|location=Sequence derived from alignment at M-pyrifera_M_contig97940:2..550+ (Macrocystis pyrifera P11B4 male)
ATTTGGGTGAACTCCGACGATTACCTGCTCCCGGGTGCCCTGGCCACACT
CGCCGCGCACATCGAACAAAACCCGCACGAACGCGTCTTCATGAGTAACC
ATGTCCGCGTTGCGAGCGACGGTTCAACGATCGCGCGTATCGTTCCGAAT
TACTCACCCTGGAAGCTCCGGCACTGGTGGTGGGCCGCGTTGCAATTGTG
GCAACCGGGCCTGGTATTTCATCGATCCGCCTTCGAGACCGCGGGTCCGC
TGGACGCGCGACTGCACTACGCAATGGACTTTGATTTCTTTCTCAAGCTC
CAGGATGTGCAGCGTTTTCACTACCTGGATGCCGATCTTGTCGCCTTTCG
GGTACACGACGCTCAAAAAGGGCACGCTAACGAAGTGCCGTTTATCGAAG
AACGGATCGCTGCAACGAACGCGTACTGGCAAAACCGGTCTGCGCTGCGG
GCGGTGTTTTACCGATACCTGCTTTATTTCGTCGAAGGATCGCTCGTCTT
TGTCGAAGCGTTACGTCAGTACGAAAGCGGCGACGCGGCGACGGCGCGCA
TTTGGGTGAACTCCGACGATTACCTGCTCCCGGGTGCCCTGGCCACACTC
GCCGCGCACATCGAACAAAACCCGCACGAACGCGTCTTCATGAGTAACCA
TGTCCGCGTTGCGAGCGACGGTTCAACGATCGCGCGTATCGTTCCGAATT
ACTCACCCTGGAAGCTCCGGCACTGGTGGTGGGCCGCGTTGCAATTGTGG
CAACCGGGCCTGGTATTTCATCGATCCGCCTTCGAGACCGCGGGTCCGCT
GGACGCGCGACTGCACTACGCAATGGACTTTGATTTCTTTCTCAAGCTCC
AGGATGTGCAGCGTTTTCACTACCTGGATGCCGATCTTGTCGCCTTTCGG
GTACACGACGCTCAAAAAGGGCACGCTAACGAAGTGCCGTTTATCGAAGA
ACGGATCGCTGCAACGAACGCGTACTGGCAAAACCGGTCTGCGCTGCGGG
CGGTGTTTTACCGATACCTGCTTTATTTCGTCGAAGGATCGCTCGTCTTT
GTCGAAGCGTTACGTCAGTACGAAAGCGGCGACGCGGCGACGGCGCGC
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